Wall clock time and date at job start Tue Mar 31 2020 03:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.64517 * 61.69070 * 5 3 2 7 7 C 1.54326 * 110.72038 * 298.54848 * 5 3 2 8 8 N 1.47023 * 107.27230 * 219.44420 * 7 5 3 9 9 C 1.34778 * 125.64764 * 178.90112 * 8 7 5 10 10 O 1.21593 * 119.99715 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00041 * 0.02753 * 9 8 7 12 12 C 1.46498 * 119.99823 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47112 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47100 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00304 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00190 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99859 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00491 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46570 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47209 * 119.99637 * 18 16 14 21 21 H 1.48495 * 109.47088 * 239.99977 * 18 16 14 22 22 C 1.47427 * 108.70050 * 358.93952 * 8 7 5 23 23 C 1.54904 * 104.83331 * 24.13217 * 22 8 7 24 24 H 1.08999 * 111.00747 * 81.06326 * 23 22 8 25 25 C 1.53002 * 111.00217 * 204.91567 * 23 22 8 26 26 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 27 27 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 28 28 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.88141 * 338.86007 * 7 5 3 30 30 H 1.09002 * 109.88549 * 99.87363 * 7 5 3 31 31 H 0.96998 * 119.99877 * 359.97438 * 11 9 8 32 32 H 1.09002 * 109.47791 * 300.00165 * 12 11 9 33 33 H 1.09003 * 109.47241 * 60.00216 * 12 11 9 34 34 H 1.08993 * 109.47158 * 300.00145 * 13 12 11 35 35 H 1.08998 * 109.46835 * 60.00802 * 13 12 11 36 36 H 0.97000 * 120.00238 * 180.02562 * 17 16 14 37 37 H 1.09004 * 110.36495 * 142.96720 * 22 8 7 38 38 H 1.09004 * 110.36582 * 265.17383 * 22 8 7 39 39 H 1.09002 * 109.47395 * 172.19103 * 25 23 22 40 40 H 1.08998 * 109.47497 * 292.19317 * 25 23 22 41 41 H 1.09005 * 109.47170 * 52.19142 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9750 0.8122 -0.8988 7 6 4.1482 0.6143 1.2670 8 7 5.2748 1.4461 1.7147 9 6 6.0351 1.2183 2.8040 10 8 6.9448 1.9765 3.0798 11 7 5.7872 0.1501 3.5875 12 6 6.6140 -0.0977 4.7712 13 6 6.1249 -1.3630 5.4791 14 6 6.9750 -1.6175 6.6970 15 1 7.7831 -0.9441 6.9420 16 6 6.7214 -2.7102 7.4987 17 7 5.7371 -3.5300 7.2007 18 14 7.7756 -3.0263 9.0081 19 1 8.8090 -1.9659 9.1208 20 1 6.9192 -3.0146 10.2213 21 1 8.4369 -4.3498 8.8817 22 6 5.4346 2.5709 0.7752 23 6 4.0389 2.7473 0.1267 24 1 3.3747 3.3159 0.7775 25 6 4.1528 3.4075 -1.2488 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.3866 0.5716 2.0457 30 1 4.4968 -0.3918 1.0340 31 1 5.0613 -0.4545 3.3676 32 1 7.6527 -0.2291 4.4680 33 1 6.5386 0.7508 5.4512 34 1 5.0864 -1.2312 5.7824 35 1 6.2001 -2.2117 4.7993 36 1 5.5584 -4.2986 7.7648 37 1 5.7205 3.4756 1.3118 38 1 6.1794 2.3291 0.0170 39 1 3.1798 3.3940 -1.7400 40 1 4.4857 4.4386 -1.1305 41 1 4.8740 2.8602 -1.8559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279776160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:06 Heat of formation + Delta-G solvation = -145.949611 kcal Electronic energy + Delta-G solvation = -22467.919751 eV Core-core repulsion = 18960.779118 eV Total energy + Delta-G solvation = -3507.140633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.01938 -41.03945 -38.97505 -37.47972 -36.57781 -34.89391 -33.95127 -31.64712 -31.37305 -28.49301 -27.72039 -26.30674 -25.18810 -22.98661 -22.58978 -21.14935 -21.05590 -19.27408 -18.65216 -18.45729 -17.96883 -17.48360 -17.05808 -16.78631 -16.48332 -15.79052 -15.37706 -15.25505 -14.82296 -14.59421 -14.40003 -14.23302 -14.14373 -13.63613 -13.51472 -13.26643 -13.19869 -12.94542 -12.88057 -12.50534 -12.25753 -12.20970 -12.12781 -11.81903 -11.76898 -11.69250 -11.56878 -11.47787 -11.21402 -10.60205 -10.20921 -9.56207 -8.23166 -6.33281 1.02517 1.42152 1.42510 1.48257 1.56803 1.73367 2.08258 2.41680 2.91065 3.11779 3.23033 3.35429 3.70414 3.96416 4.06303 4.20157 4.30628 4.34365 4.40897 4.45752 4.51446 4.52579 4.65565 4.70014 4.74351 4.85436 4.86787 4.98835 5.14690 5.20520 5.29365 5.31199 5.39527 5.51247 5.59415 5.79680 5.96689 6.17770 6.62891 6.79769 6.92367 7.36008 7.49913 8.88991 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.003334 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.888127 B = 8396.126409 C = 9575.177892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.476 3.524 4 O -0.526 6.526 5 C -0.082 4.082 6 H 0.158 0.842 7 C 0.109 3.891 8 N -0.638 5.638 9 C 0.716 3.284 10 O -0.634 6.634 11 N -0.731 5.731 12 C 0.160 3.840 13 C 0.024 3.976 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.276 1.276 22 C 0.126 3.874 23 C -0.079 4.079 24 H 0.080 0.920 25 C -0.135 4.135 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.129 0.871 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.405 0.595 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.007 0.993 35 H 0.010 0.990 36 H 0.266 0.734 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.632 7.697 -20.497 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.319 3.681 4 O -0.415 6.415 5 C -0.101 4.101 6 H 0.176 0.824 7 C -0.014 4.014 8 N -0.376 5.376 9 C 0.418 3.582 10 O -0.515 6.515 11 N -0.386 5.386 12 C 0.036 3.964 13 C -0.013 4.013 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.202 1.202 22 C 0.004 3.996 23 C -0.099 4.099 24 H 0.098 0.902 25 C -0.192 4.192 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.147 0.853 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.240 0.760 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.025 0.975 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.239 8.348 -20.148 23.685 hybrid contribution -0.309 -0.543 1.007 1.185 sum -9.547 7.805 -19.141 22.770 Atomic orbital electron populations 1.23559 0.74711 1.05711 1.02566 1.86526 1.25012 1.32591 1.83404 1.23541 0.91778 0.81367 0.71428 1.90674 1.67502 1.37208 1.46100 1.22234 0.86876 0.99280 1.01713 0.82448 1.21962 0.88477 0.95699 0.95248 1.47496 1.33868 1.30183 1.26101 1.15607 0.81551 0.81659 0.79373 1.90868 1.35289 1.50546 1.74829 1.45259 1.37452 1.27746 1.28096 1.21119 0.93208 0.97948 0.84154 1.19126 0.96051 0.91561 0.94579 1.21482 1.16279 1.10419 1.10195 0.92282 1.25858 0.96570 0.95580 1.01100 1.70062 1.31117 1.15285 1.40094 0.85392 0.78701 0.78253 0.78674 1.18993 1.20281 1.20158 1.22363 0.97386 0.88790 0.91099 1.22292 0.94794 0.93092 0.99691 0.90170 1.21680 1.02843 1.01438 0.93264 0.91351 0.92351 0.85320 0.91616 0.88075 0.76003 0.93485 0.93879 0.97451 0.97116 0.92543 0.91278 0.89306 0.92016 0.91094 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.07 10.55 -51.42 -0.54 -6.61 16 3 C 0.48 8.82 7.12 71.24 0.51 9.32 16 4 O -0.53 -12.50 15.51 21.98 0.34 -12.15 16 5 C -0.08 -1.22 2.92 -10.35 -0.03 -1.25 16 6 H 0.16 1.39 8.04 -2.39 -0.02 1.37 16 7 C 0.11 2.10 5.72 86.73 0.50 2.60 16 8 N -0.64 -16.83 3.33 -829.73 -2.76 -19.59 16 9 C 0.72 26.10 8.49 179.06 1.52 27.62 16 10 O -0.63 -28.28 16.60 -4.01 -0.07 -28.35 16 11 N -0.73 -26.86 5.52 -478.52 -2.64 -29.50 16 12 C 0.16 7.09 5.61 86.38 0.48 7.57 16 13 C 0.02 1.24 5.09 29.85 0.15 1.39 16 14 C -0.55 -30.63 9.11 25.60 0.23 -30.39 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 16 C 0.01 0.43 5.46 84.65 0.46 0.89 16 17 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16 18 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 C 0.13 2.62 6.37 86.85 0.55 3.17 16 23 C -0.08 -1.30 2.69 -9.40 -0.03 -1.32 16 24 H 0.08 1.64 7.49 -2.39 -0.02 1.63 16 25 C -0.13 -1.54 9.31 71.98 0.67 -0.87 16 26 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 27 H 0.06 0.80 8.13 -2.39 -0.02 0.79 16 28 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.07 1.36 7.81 -2.38 -0.02 1.34 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.40 12.89 7.46 -92.71 -0.69 12.20 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.07 1.67 8.04 -2.38 -0.02 1.65 16 38 H 0.09 1.55 7.99 -2.38 -0.02 1.53 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.63 8.08 -2.38 -0.02 0.61 16 Total: -1.00 -73.26 346.45 3.19 -70.07 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.33 Total: 14.01 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 6.22 Total: 20.27 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -5.11 Total: -102.95 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -0.27 Total: -47.11 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -73.26 3.19 -70.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279776160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.880 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds