Wall clock time and date at job start Tue Mar 31 2020 04:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21276 * 120.00247 * 2 1 4 4 N 1.34774 * 119.99519 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99852 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47260 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.50783 * 304.89734 * 6 5 4 8 8 C 1.52876 * 109.62337 * 184.90439 * 6 5 4 9 9 N 1.47151 * 108.60779 * 187.89798 * 8 6 5 10 10 C 1.34777 * 120.98158 * 230.50438 * 9 8 6 11 11 O 1.21279 * 120.00162 * 359.71262 * 10 9 8 12 12 C 1.50696 * 120.00141 * 179.71541 * 10 9 8 13 13 C 1.53002 * 109.47300 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46925 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00196 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99426 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47361 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47264 * 120.00115 * 18 16 14 21 21 H 1.48500 * 109.46969 * 239.99720 * 18 16 14 22 22 C 1.47151 * 118.03524 * 50.22671 * 9 8 6 23 23 C 1.53298 * 108.38641 * 309.71504 * 22 9 8 24 24 O 1.42957 * 109.51260 * 64.99858 * 6 5 4 25 25 H 1.08997 * 109.47392 * 240.00529 * 1 2 3 26 26 H 1.09003 * 109.47230 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47387 * 120.00004 * 1 2 3 28 28 H 0.96999 * 120.00612 * 359.97438 * 4 2 1 29 29 H 1.09001 * 109.47137 * 59.99655 * 5 4 2 30 30 H 1.09001 * 109.46658 * 299.99482 * 5 4 2 31 31 H 1.09003 * 109.61902 * 68.07525 * 8 6 5 32 32 H 1.09007 * 109.52567 * 307.65865 * 8 6 5 33 33 H 1.09004 * 109.47043 * 59.99777 * 12 10 9 34 34 H 1.09004 * 109.47476 * 299.99851 * 12 10 9 35 35 H 1.09000 * 109.46497 * 60.00269 * 13 12 10 36 36 H 1.09000 * 109.47312 * 300.00049 * 13 12 10 37 37 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.68524 * 69.44220 * 22 9 8 39 39 H 1.09005 * 109.68158 * 189.99501 * 22 9 8 40 40 H 1.08998 * 109.51453 * 172.22642 * 23 22 9 41 41 H 1.09002 * 109.51333 * 292.33222 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1807 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1558 -2.6099 0.0010 7 1 3.7226 -3.1491 0.8433 8 6 5.6795 -2.6158 0.1247 9 7 6.1609 -3.9928 -0.0682 10 6 7.0081 -4.5614 0.8124 11 8 7.3890 -3.9349 1.7785 12 6 7.4822 -5.9755 0.5966 13 6 8.4282 -6.3749 1.7308 14 6 8.9027 -7.7889 1.5146 15 1 8.5639 -8.3466 0.6541 16 6 9.7695 -8.3704 2.4155 17 7 10.1826 -7.6911 3.4631 18 14 10.3583 -10.1228 2.1471 19 1 9.7523 -10.6637 0.9040 20 1 11.8380 -10.1342 2.0227 21 1 9.9522 -10.9637 3.3018 22 6 5.6851 -4.7330 -1.2477 23 6 4.1568 -4.6259 -1.3017 24 8 3.7784 -3.2496 -1.2205 25 1 -0.3634 -0.5137 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8899 28 1 1.6958 -2.0073 0.0013 29 1 4.0088 -0.6532 0.8911 30 1 4.0094 -0.6538 -0.8890 31 1 5.9677 -2.2613 1.1143 32 1 6.1095 -1.9664 -0.6380 33 1 8.0090 -6.0408 -0.3555 34 1 6.6247 -6.6483 0.5842 35 1 7.9017 -6.3095 2.6830 36 1 9.2857 -5.7021 1.7428 37 1 10.7926 -8.1001 4.0966 38 1 6.1156 -4.3005 -2.1509 39 1 5.9770 -5.7801 -1.1664 40 1 3.7951 -5.0483 -2.2391 41 1 3.7237 -5.1733 -0.4645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291676517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:58 Heat of formation + Delta-G solvation = -126.633848 kcal Electronic energy + Delta-G solvation = -22332.551481 eV Core-core repulsion = 18826.248442 eV Total energy + Delta-G solvation = -3506.303038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45348 -39.65791 -38.30365 -35.30778 -34.56069 -33.58933 -32.38450 -31.01384 -30.12701 -28.33578 -26.59347 -24.92972 -23.50163 -22.04010 -21.23738 -20.61747 -18.75849 -17.41511 -17.09299 -16.98423 -16.57505 -16.01976 -15.57375 -15.48204 -15.40527 -14.91483 -14.67603 -14.44035 -13.72215 -13.71317 -13.35081 -13.15470 -13.00288 -12.59824 -12.35074 -12.21763 -12.17215 -11.95250 -11.54946 -11.16051 -10.99022 -10.93498 -10.61515 -10.36106 -10.19232 -10.03849 -9.69235 -9.39458 -9.26477 -9.07482 -8.52325 -8.36629 -6.00757 -4.05581 2.36910 2.77374 3.07277 3.12439 3.29184 3.32430 3.36600 3.39381 4.42249 4.45317 4.47034 4.60809 4.71204 4.78650 4.92393 4.95889 5.00650 5.03590 5.19518 5.29390 5.34352 5.36100 5.43745 5.54382 5.59202 5.67881 5.77934 6.07770 6.09042 6.11881 6.48776 6.78286 6.79987 7.19258 7.56847 7.69049 7.79291 7.92999 8.01344 8.31975 8.59754 9.02731 9.58345 11.10204 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038642 B = 0.002783 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.422553 B =10057.050333 C =10375.582651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.509 3.491 3 O -0.549 6.549 4 N -0.725 5.725 5 C 0.129 3.871 6 C 0.067 3.933 7 H 0.071 0.929 8 C 0.086 3.914 9 N -0.629 5.629 10 C 0.514 3.486 11 O -0.529 6.529 12 C -0.127 4.127 13 C 0.036 3.964 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.073 3.927 23 C 0.048 3.952 24 O -0.376 6.376 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.404 0.596 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.481 9.154 -11.027 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.296 3.704 3 O -0.427 6.427 4 N -0.378 5.378 5 C 0.005 3.995 6 C 0.008 3.992 7 H 0.089 0.911 8 C -0.038 4.038 9 N -0.366 5.366 10 C 0.305 3.695 11 O -0.403 6.403 12 C -0.167 4.167 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.050 4.050 23 C -0.029 4.029 24 O -0.295 6.295 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.239 0.761 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.781 10.327 -10.465 23.851 hybrid contribution 0.285 -1.632 -0.002 1.657 sum -18.496 8.695 -10.467 22.962 Atomic orbital electron populations 1.21908 0.91565 1.05540 1.04309 1.20820 0.90688 0.83338 0.75534 1.90737 1.70915 1.31435 1.49567 1.45930 1.07124 1.09049 1.75671 1.21308 0.80231 0.94303 1.03646 1.22626 0.95071 0.93442 0.88045 0.91143 1.21934 0.92557 0.84806 1.04513 1.48335 1.48417 1.14013 1.25827 1.21670 0.76734 0.90069 0.81016 1.90672 1.55691 1.64734 1.29249 1.21893 1.01435 0.89482 1.03900 1.18923 0.93524 0.95884 0.91790 1.21233 1.27761 0.98551 1.09029 0.92543 1.25033 0.96286 0.97910 0.95180 1.70006 1.33280 1.36839 1.12616 0.86529 0.78574 0.84744 0.78074 1.19746 1.20977 1.20998 1.22401 0.94827 0.98964 0.88810 1.23022 0.94172 0.82670 1.03059 1.87952 1.79754 1.24169 1.37662 0.89374 0.88970 0.89344 0.76122 0.89509 0.90242 0.87877 0.90808 0.90121 0.90230 0.95822 0.95779 0.92947 0.90699 0.87922 0.87473 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.32 36.00 0.37 -0.54 16 2 C 0.51 4.89 7.94 -10.99 -0.09 4.80 16 3 O -0.55 -7.85 17.09 5.56 0.10 -7.75 16 4 N -0.73 -5.95 5.50 -60.29 -0.33 -6.28 16 5 C 0.13 1.22 5.35 -4.04 -0.02 1.20 16 6 C 0.07 0.66 2.80 -26.79 -0.07 0.58 16 7 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 8 C 0.09 1.05 5.90 -3.75 -0.02 1.03 16 9 N -0.63 -8.86 3.03 -172.53 -0.52 -9.38 16 10 C 0.51 9.72 7.71 -10.99 -0.08 9.63 16 11 O -0.53 -12.23 15.45 5.56 0.09 -12.14 16 12 C -0.13 -2.50 4.01 -27.88 -0.11 -2.61 16 13 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 14 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 C 0.07 0.76 6.54 -3.53 -0.02 0.74 16 23 C 0.05 0.41 6.99 37.31 0.26 0.67 16 24 O -0.38 -3.64 10.33 -35.23 -0.36 -4.01 16 25 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.40 2.41 8.47 -40.82 -0.35 2.07 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.42 7.08 -51.93 -0.37 1.05 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 34 H 0.08 1.40 7.66 -51.93 -0.40 1.00 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.02 6.05 -51.93 -0.31 0.70 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -36.64 342.85 -6.93 -43.57 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.45 Total: -1.99 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.32 Total: 2.91 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -0.12 Total: -42.06 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.18 Total: -23.90 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.64 -6.93 -43.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291676517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.067 kcal (2) G-P(sol) polarization free energy of solvation -36.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds