Wall clock time and date at job start Tue Mar 31 2020 04:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21276 * 120.00247 * 2 1 4 4 N 1.34774 * 119.99519 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99852 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47260 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.50783 * 304.89734 * 6 5 4 8 8 C 1.52876 * 109.62337 * 184.90439 * 6 5 4 9 9 N 1.47151 * 108.60779 * 187.89798 * 8 6 5 10 10 C 1.34777 * 120.98158 * 230.50438 * 9 8 6 11 11 O 1.21279 * 120.00162 * 359.71262 * 10 9 8 12 12 C 1.50696 * 120.00141 * 179.71541 * 10 9 8 13 13 C 1.53002 * 109.47300 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46925 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00196 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99426 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47361 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47264 * 120.00115 * 18 16 14 21 21 H 1.48500 * 109.46969 * 239.99720 * 18 16 14 22 22 C 1.47151 * 118.03524 * 50.22671 * 9 8 6 23 23 C 1.53298 * 108.38641 * 309.71504 * 22 9 8 24 24 O 1.42957 * 109.51260 * 64.99858 * 6 5 4 25 25 H 1.08997 * 109.47392 * 240.00529 * 1 2 3 26 26 H 1.09003 * 109.47230 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47387 * 120.00004 * 1 2 3 28 28 H 0.96999 * 120.00612 * 359.97438 * 4 2 1 29 29 H 1.09001 * 109.47137 * 59.99655 * 5 4 2 30 30 H 1.09001 * 109.46658 * 299.99482 * 5 4 2 31 31 H 1.09003 * 109.61902 * 68.07525 * 8 6 5 32 32 H 1.09007 * 109.52567 * 307.65865 * 8 6 5 33 33 H 1.09004 * 109.47043 * 59.99777 * 12 10 9 34 34 H 1.09004 * 109.47476 * 299.99851 * 12 10 9 35 35 H 1.09000 * 109.46497 * 60.00269 * 13 12 10 36 36 H 1.09000 * 109.47312 * 300.00049 * 13 12 10 37 37 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.68524 * 69.44220 * 22 9 8 39 39 H 1.09005 * 109.68158 * 189.99501 * 22 9 8 40 40 H 1.08998 * 109.51453 * 172.22642 * 23 22 9 41 41 H 1.09002 * 109.51333 * 292.33222 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1807 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1558 -2.6099 0.0010 7 1 3.7226 -3.1491 0.8433 8 6 5.6795 -2.6158 0.1247 9 7 6.1609 -3.9928 -0.0682 10 6 7.0081 -4.5614 0.8124 11 8 7.3890 -3.9349 1.7785 12 6 7.4822 -5.9755 0.5966 13 6 8.4282 -6.3749 1.7308 14 6 8.9027 -7.7889 1.5146 15 1 8.5639 -8.3466 0.6541 16 6 9.7695 -8.3704 2.4155 17 7 10.1826 -7.6911 3.4631 18 14 10.3583 -10.1228 2.1471 19 1 9.7523 -10.6637 0.9040 20 1 11.8380 -10.1342 2.0227 21 1 9.9522 -10.9637 3.3018 22 6 5.6851 -4.7330 -1.2477 23 6 4.1568 -4.6259 -1.3017 24 8 3.7784 -3.2496 -1.2205 25 1 -0.3634 -0.5137 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8899 28 1 1.6958 -2.0073 0.0013 29 1 4.0088 -0.6532 0.8911 30 1 4.0094 -0.6538 -0.8890 31 1 5.9677 -2.2613 1.1143 32 1 6.1095 -1.9664 -0.6380 33 1 8.0090 -6.0408 -0.3555 34 1 6.6247 -6.6483 0.5842 35 1 7.9017 -6.3095 2.6830 36 1 9.2857 -5.7021 1.7428 37 1 10.7926 -8.1001 4.0966 38 1 6.1156 -4.3005 -2.1509 39 1 5.9770 -5.7801 -1.1664 40 1 3.7951 -5.0483 -2.2391 41 1 3.7237 -5.1733 -0.4645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291676517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:57 Heat of formation + Delta-G solvation = -155.286347 kcal Electronic energy + Delta-G solvation = -22333.793946 eV Core-core repulsion = 18826.248442 eV Total energy + Delta-G solvation = -3507.545504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51318 -40.56963 -39.47503 -36.24214 -35.66517 -35.57585 -33.45396 -32.69658 -30.77064 -29.34795 -28.05435 -26.34965 -24.37705 -23.59835 -22.32648 -21.51556 -20.04528 -18.92799 -18.08412 -17.83216 -17.67109 -17.39445 -16.77958 -16.63954 -16.37536 -16.26512 -15.89548 -15.52449 -14.98700 -14.80254 -14.33473 -14.15486 -14.13417 -13.85507 -13.59493 -13.36825 -13.15027 -12.92883 -12.86326 -12.77194 -12.44123 -12.32110 -11.96248 -11.81357 -11.58485 -11.29572 -11.24468 -11.04065 -10.72079 -10.58729 -10.17297 -9.64017 -8.18859 -6.33016 1.42555 1.43808 1.56962 1.59027 1.64270 1.77872 2.28847 2.42563 2.55619 3.14603 3.58933 3.68132 3.74084 3.90810 3.98813 4.01959 4.20440 4.33606 4.37582 4.43581 4.49861 4.53654 4.56102 4.63086 4.70197 4.75801 4.83682 4.94010 5.05485 5.11545 5.35302 5.40372 5.50063 5.60129 5.83723 6.02326 6.15625 6.26951 6.54801 6.85719 7.16025 7.24364 7.37622 8.94108 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038642 B = 0.002783 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.422553 B =10057.050333 C =10375.582651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.503 3.497 3 O -0.604 6.604 4 N -0.714 5.714 5 C 0.133 3.867 6 C 0.085 3.915 7 H 0.074 0.926 8 C 0.081 3.919 9 N -0.618 5.618 10 C 0.512 3.488 11 O -0.587 6.587 12 C -0.114 4.114 13 C 0.041 3.959 14 C -0.540 4.540 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.939 5.939 18 Si 0.974 3.026 19 H -0.250 1.250 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.063 3.937 23 C 0.050 3.950 24 O -0.377 6.377 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.418 0.582 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.108 0.892 35 H -0.018 1.018 36 H -0.020 1.020 37 H 0.262 0.738 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.671 7.142 -13.590 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.292 3.708 3 O -0.486 6.486 4 N -0.367 5.367 5 C 0.008 3.992 6 C 0.026 3.974 7 H 0.091 0.909 8 C -0.043 4.043 9 N -0.352 5.352 10 C 0.303 3.697 11 O -0.466 6.466 12 C -0.153 4.153 13 C 0.004 3.996 14 C -0.578 4.578 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.173 1.173 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.059 4.059 23 C -0.027 4.027 24 O -0.296 6.296 25 H 0.129 0.871 26 H 0.106 0.894 27 H 0.131 0.869 28 H 0.255 0.745 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.000 1.000 36 H -0.002 1.002 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.159 0.841 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.041 8.279 -13.101 26.133 hybrid contribution 0.941 -0.969 0.751 1.545 sum -20.100 7.310 -12.351 24.698 Atomic orbital electron populations 1.21917 0.87868 1.06062 1.06507 1.21651 0.92455 0.82583 0.74131 1.90715 1.72308 1.33337 1.52229 1.45864 1.06524 1.09588 1.74738 1.21154 0.81256 0.93887 1.02928 1.22363 0.92859 0.93692 0.88514 0.90852 1.22069 0.94622 0.83835 1.03751 1.48264 1.46579 1.14712 1.25663 1.21485 0.77318 0.89780 0.81095 1.90654 1.58198 1.65845 1.31921 1.21641 1.01148 0.90696 1.01852 1.18709 0.93044 0.95149 0.92718 1.21734 1.27461 0.99073 1.09514 0.90311 1.26158 0.96520 1.03179 0.94735 1.70187 1.34315 1.39385 1.14006 0.85266 0.77824 0.78304 0.78802 1.17333 1.20834 1.20694 1.22800 0.96519 0.99141 0.87390 1.23201 0.92421 0.82006 1.05060 1.87967 1.79477 1.24998 1.37126 0.87091 0.89374 0.86945 0.74491 0.90336 0.91081 0.90035 0.89782 0.87768 0.87387 0.99953 1.00198 0.92887 0.89149 0.86959 0.84088 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.32 71.24 0.74 -0.60 16 2 C 0.50 9.13 7.94 87.66 0.70 9.82 16 3 O -0.60 -17.50 17.09 -3.02 -0.05 -17.55 16 4 N -0.71 -10.63 5.50 -463.05 -2.55 -13.18 16 5 C 0.13 2.43 5.35 86.38 0.46 2.89 16 6 C 0.08 1.54 2.80 30.55 0.09 1.63 16 7 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 8 C 0.08 1.96 5.90 86.21 0.51 2.47 16 9 N -0.62 -16.72 3.03 -818.14 -2.48 -19.20 16 10 C 0.51 19.60 7.71 87.66 0.68 20.28 16 11 O -0.59 -28.70 15.45 -3.03 -0.05 -28.75 16 12 C -0.11 -4.40 4.01 29.85 0.12 -4.28 16 13 C 0.04 2.27 4.26 29.85 0.13 2.40 16 14 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 15 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 16 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 17 N -0.94 -59.24 13.29 21.45 0.28 -58.95 16 18 Si 0.97 43.54 29.54 68.60 2.03 45.56 16 19 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 C 0.06 1.10 6.54 86.35 0.57 1.67 16 23 C 0.05 0.64 6.99 72.08 0.50 1.15 16 24 O -0.38 -6.11 10.33 -148.98 -1.54 -7.65 16 25 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 27 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.42 3.89 8.47 -92.71 -0.79 3.10 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 2.37 7.08 -2.39 -0.02 2.35 16 32 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.10 3.53 8.02 -2.38 -0.02 3.51 16 34 H 0.11 3.54 7.66 -2.39 -0.02 3.53 16 35 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 36 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 37 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 1.78 6.05 -2.38 -0.01 1.77 16 40 H 0.14 0.96 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -84.80 342.85 1.06 -83.73 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.24 Total: 8.42 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.17 Total: 7.56 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -4.74 Total: -91.32 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -1.64 Total: -53.95 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -84.80 1.06 -83.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291676517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.554 kcal (2) G-P(sol) polarization free energy of solvation -84.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds