Wall clock time and date at job start Tue Mar 31 2020 03:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.90182 * 2 1 4 4 O 1.43895 * 110.06449 * 121.18279 * 2 1 3 5 5 C 1.44436 * 106.99560 * 145.81334 * 4 2 1 6 6 C 1.55100 * 103.55893 * 320.27192 * 5 4 2 7 7 C 1.53560 * 109.90817 * 238.91462 * 2 1 3 8 8 C 1.52659 * 110.37701 * 356.63215 * 7 2 1 9 9 N 1.47275 * 108.39594 * 173.66416 * 8 7 2 10 10 C 1.34768 * 121.04716 * 130.41238 * 9 8 7 11 11 O 1.21583 * 120.00378 * 175.02693 * 10 9 8 12 12 N 1.34781 * 120.00096 * 355.03552 * 10 9 8 13 13 C 1.46496 * 120.00085 * 185.07743 * 12 10 9 14 14 C 1.50706 * 109.46967 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99865 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00008 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47005 * 60.00026 * 18 16 14 20 20 H 1.48497 * 109.47463 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47142 * 300.00518 * 18 16 14 22 22 C 1.47163 * 117.90969 * 310.42178 * 9 8 7 23 23 C 1.53283 * 108.51398 * 51.02165 * 22 9 8 24 24 O 1.42237 * 110.64826 * 119.63062 * 7 2 1 25 25 H 1.09001 * 109.47344 * 181.08356 * 1 2 3 26 26 H 1.09005 * 109.47067 * 301.08253 * 1 2 3 27 27 H 1.08994 * 109.47182 * 61.08036 * 1 2 3 28 28 H 1.08996 * 110.60824 * 201.74636 * 5 4 2 29 29 H 1.09005 * 110.60108 * 78.79003 * 5 4 2 30 30 H 1.09004 * 110.93529 * 154.77378 * 6 5 4 31 31 H 1.09004 * 110.93186 * 278.44189 * 6 5 4 32 32 H 1.09006 * 109.67653 * 293.38508 * 8 7 2 33 33 H 1.08994 * 109.68407 * 53.93280 * 8 7 2 34 34 H 0.97000 * 119.99629 * 5.07508 * 12 10 9 35 35 H 1.08994 * 109.47793 * 299.99960 * 13 12 10 36 36 H 1.09006 * 109.46927 * 59.99981 * 13 12 10 37 37 H 0.97003 * 120.00340 * 179.97438 * 17 16 14 38 38 H 1.08995 * 109.62770 * 291.31278 * 22 9 8 39 39 H 1.09007 * 109.78905 * 170.82453 * 22 9 8 40 40 H 1.08996 * 109.50873 * 187.26920 * 23 22 9 41 41 H 1.08994 * 109.54688 * 67.14468 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 8 2.0237 -0.6998 1.1563 5 6 3.2418 -1.3662 0.7584 6 6 2.9227 -1.8859 -0.6677 7 6 2.0529 -0.7455 -1.2365 8 6 0.8907 -1.3267 -2.0377 9 7 1.4256 -1.8962 -3.2861 10 6 1.0981 -3.1436 -3.6773 11 8 1.4769 -3.5622 -4.7541 12 7 0.3504 -3.9270 -2.8750 13 6 0.0874 -5.3189 -3.2487 14 6 -0.7651 -5.9706 -2.1905 15 1 -1.0799 -5.4044 -1.3264 16 6 -1.1441 -7.2893 -2.3262 17 7 -0.7611 -7.9786 -3.3788 18 14 -2.2014 -8.0969 -1.0150 19 1 -3.4877 -7.3645 -0.8960 20 1 -2.4679 -9.5079 -1.3937 21 1 -1.4888 -8.0605 0.2873 22 6 2.3293 -1.0606 -4.0928 23 6 3.4363 -0.5200 -3.1806 24 8 2.8424 0.1175 -2.0458 25 1 -0.3634 -1.0275 0.0194 26 1 -0.3633 0.5306 0.8802 27 1 -0.3633 0.4969 -0.8995 28 1 3.4615 -2.1967 1.4292 29 1 4.0735 -0.6620 0.7329 30 1 3.8354 -2.0077 -1.2511 31 1 2.3618 -2.8196 -0.6255 32 1 0.4001 -2.1087 -1.4581 33 1 0.1751 -0.5384 -2.2710 34 1 -0.0136 -3.5692 -2.0501 35 1 -0.4355 -5.3460 -4.2046 36 1 1.0318 -5.8563 -3.3358 37 1 -1.0274 -8.9065 -3.4741 38 1 1.7717 -0.2293 -4.5241 39 1 2.7711 -1.6582 -4.8902 40 1 4.0398 0.2027 -3.7297 41 1 4.0680 -1.3431 -2.8467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350041823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:24 Heat of formation + Delta-G solvation = -101.320921 kcal Electronic energy + Delta-G solvation = -24040.674105 eV Core-core repulsion = 20535.468718 eV Total energy + Delta-G solvation = -3505.205388 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16521 -39.15779 -37.62553 -34.60106 -34.35577 -33.00018 -32.29162 -31.45998 -29.42303 -27.29481 -26.28403 -25.30211 -23.70683 -22.46586 -21.66891 -20.21828 -18.98360 -18.45029 -17.21434 -16.34702 -16.08933 -15.98397 -15.76700 -15.37250 -14.99469 -14.74865 -14.41635 -14.11976 -13.98640 -13.56965 -13.16544 -12.95448 -12.66854 -12.52517 -12.18430 -11.91036 -11.84001 -11.54453 -11.47228 -11.38716 -11.06546 -10.97748 -10.88650 -10.63697 -10.30848 -10.12312 -9.87006 -9.45676 -9.39207 -8.75717 -8.41649 -7.78928 -6.17232 -4.24305 2.95985 3.24915 3.29955 3.31512 3.35316 3.64435 3.78927 4.22124 4.30238 4.43657 4.58544 4.62699 4.85759 4.92878 4.99211 5.04351 5.07168 5.18828 5.21692 5.32922 5.35986 5.40098 5.49837 5.57757 5.63948 5.72794 5.82930 5.87453 5.92974 6.00617 6.55497 6.59645 7.00631 7.04431 7.44720 7.48239 7.53276 7.79631 7.98499 8.70220 8.83677 9.24263 9.43790 10.92868 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.005125 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.189868 B = 5462.031755 C = 6446.056336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 H 0.083 0.917 4 O -0.369 6.369 5 C 0.051 3.949 6 C -0.180 4.180 7 C 0.077 3.923 8 C 0.096 3.904 9 N -0.641 5.641 10 C 0.699 3.301 11 O -0.595 6.595 12 N -0.728 5.728 13 C 0.267 3.733 14 C -0.543 4.543 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.097 3.903 23 C 0.044 3.956 24 O -0.365 6.365 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.385 0.615 35 H 0.026 0.974 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.696 17.405 6.298 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 H 0.101 0.899 4 O -0.288 6.288 5 C -0.025 4.025 6 C -0.218 4.218 7 C 0.036 3.964 8 C -0.028 4.028 9 N -0.382 5.382 10 C 0.401 3.599 11 O -0.474 6.474 12 N -0.382 5.382 13 C 0.146 3.854 14 C -0.582 4.582 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.522 5.522 18 Si 0.731 3.269 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.201 1.201 22 C -0.027 4.027 23 C -0.033 4.033 24 O -0.284 6.284 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.219 0.781 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.870 16.999 5.644 19.183 hybrid contribution -0.591 -0.635 0.726 1.131 sum 6.279 16.364 6.370 18.649 Atomic orbital electron populations 1.22079 0.92783 1.03688 1.02986 1.22476 0.95238 0.96161 0.82776 0.89949 1.88955 1.39922 1.67688 1.32229 1.23529 0.87567 0.96417 0.94997 1.23705 1.01578 0.99355 0.97126 1.22708 0.91557 0.90597 0.91517 1.22337 0.95295 0.99213 0.85960 1.47378 1.51880 1.14621 1.24283 1.16019 0.79991 0.79635 0.84298 1.90866 1.60709 1.73526 1.22309 1.45887 1.53575 1.14560 1.24143 1.19002 0.96392 0.73671 0.96358 1.21164 1.33331 0.96823 1.06851 0.92061 1.24930 0.96075 0.96943 0.95939 1.69967 1.44665 1.09811 1.27786 0.86478 0.80594 0.78392 0.81475 1.20042 1.21040 1.20055 1.22000 0.91384 0.94750 0.94521 1.23135 0.94931 0.98369 0.86866 1.87827 1.66290 1.35792 1.38490 0.91051 0.91228 0.90501 0.88582 0.91946 0.89360 0.89031 0.88776 0.90296 0.78094 0.95599 0.95814 0.92375 0.91387 0.87952 0.87529 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.38 37.16 0.31 -1.17 16 2 C 0.09 1.00 3.88 -26.44 -0.10 0.90 16 3 H 0.08 0.87 7.97 -51.93 -0.41 0.45 16 4 O -0.37 -4.54 11.21 -35.23 -0.39 -4.94 16 5 C 0.05 0.55 7.73 38.27 0.30 0.85 16 6 C -0.18 -2.15 6.04 -24.94 -0.15 -2.30 16 7 C 0.08 0.90 0.99 -89.83 -0.09 0.82 16 8 C 0.10 1.23 4.01 -3.79 -0.02 1.21 16 9 N -0.64 -10.06 2.89 -178.29 -0.52 -10.58 16 10 C 0.70 14.57 8.31 -86.92 -0.72 13.85 16 11 O -0.60 -14.80 15.85 5.29 0.08 -14.72 16 12 N -0.73 -15.68 5.46 -66.42 -0.36 -16.04 16 13 C 0.27 7.12 5.43 -5.19 -0.03 7.09 16 14 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 15 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 18 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.10 1.27 6.60 -3.53 -0.02 1.25 16 23 C 0.04 0.47 6.73 37.30 0.25 0.72 16 24 O -0.37 -4.28 10.17 -35.23 -0.36 -4.64 16 25 H 0.07 0.70 6.88 -51.93 -0.36 0.34 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.63 6.71 -51.93 -0.35 0.28 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.04 5.96 -51.93 -0.31 0.73 16 31 H 0.09 1.24 7.69 -51.93 -0.40 0.84 16 32 H 0.09 1.23 4.57 -51.93 -0.24 0.99 16 33 H 0.08 0.90 6.31 -51.93 -0.33 0.57 16 34 H 0.38 7.23 5.85 -40.82 -0.24 6.99 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.47 7.12 -51.92 -0.37 1.10 16 40 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.66 6.12 -51.93 -0.32 0.34 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -32.81 320.64 -7.50 -40.31 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.81 Total: 5.39 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -0.69 Total: 9.88 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.14 Total: -51.90 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.67 Total: -24.30 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.81 -7.50 -40.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350041823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.010 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds