Wall clock time and date at job start Tue Mar 31 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.90182 * 2 1 4 4 O 1.43895 * 110.06449 * 121.18279 * 2 1 3 5 5 C 1.44436 * 106.99560 * 145.81334 * 4 2 1 6 6 C 1.55100 * 103.55893 * 320.27192 * 5 4 2 7 7 C 1.53560 * 109.90817 * 238.91462 * 2 1 3 8 8 C 1.52659 * 110.37701 * 356.63215 * 7 2 1 9 9 N 1.47275 * 108.39594 * 173.66416 * 8 7 2 10 10 C 1.34768 * 121.04716 * 130.41238 * 9 8 7 11 11 O 1.21583 * 120.00378 * 175.02693 * 10 9 8 12 12 N 1.34781 * 120.00096 * 355.03552 * 10 9 8 13 13 C 1.46496 * 120.00085 * 185.07743 * 12 10 9 14 14 C 1.50706 * 109.46967 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99865 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00008 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47005 * 60.00026 * 18 16 14 20 20 H 1.48497 * 109.47463 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47142 * 300.00518 * 18 16 14 22 22 C 1.47163 * 117.90969 * 310.42178 * 9 8 7 23 23 C 1.53283 * 108.51398 * 51.02165 * 22 9 8 24 24 O 1.42237 * 110.64826 * 119.63062 * 7 2 1 25 25 H 1.09001 * 109.47344 * 181.08356 * 1 2 3 26 26 H 1.09005 * 109.47067 * 301.08253 * 1 2 3 27 27 H 1.08994 * 109.47182 * 61.08036 * 1 2 3 28 28 H 1.08996 * 110.60824 * 201.74636 * 5 4 2 29 29 H 1.09005 * 110.60108 * 78.79003 * 5 4 2 30 30 H 1.09004 * 110.93529 * 154.77378 * 6 5 4 31 31 H 1.09004 * 110.93186 * 278.44189 * 6 5 4 32 32 H 1.09006 * 109.67653 * 293.38508 * 8 7 2 33 33 H 1.08994 * 109.68407 * 53.93280 * 8 7 2 34 34 H 0.97000 * 119.99629 * 5.07508 * 12 10 9 35 35 H 1.08994 * 109.47793 * 299.99960 * 13 12 10 36 36 H 1.09006 * 109.46927 * 59.99981 * 13 12 10 37 37 H 0.97003 * 120.00340 * 179.97438 * 17 16 14 38 38 H 1.08995 * 109.62770 * 291.31278 * 22 9 8 39 39 H 1.09007 * 109.78905 * 170.82453 * 22 9 8 40 40 H 1.08996 * 109.50873 * 187.26920 * 23 22 9 41 41 H 1.08994 * 109.54688 * 67.14468 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 8 2.0237 -0.6998 1.1563 5 6 3.2418 -1.3662 0.7584 6 6 2.9227 -1.8859 -0.6677 7 6 2.0529 -0.7455 -1.2365 8 6 0.8907 -1.3267 -2.0377 9 7 1.4256 -1.8962 -3.2861 10 6 1.0981 -3.1436 -3.6773 11 8 1.4769 -3.5622 -4.7541 12 7 0.3504 -3.9270 -2.8750 13 6 0.0874 -5.3189 -3.2487 14 6 -0.7651 -5.9706 -2.1905 15 1 -1.0799 -5.4044 -1.3264 16 6 -1.1441 -7.2893 -2.3262 17 7 -0.7611 -7.9786 -3.3788 18 14 -2.2014 -8.0969 -1.0150 19 1 -3.4877 -7.3645 -0.8960 20 1 -2.4679 -9.5079 -1.3937 21 1 -1.4888 -8.0605 0.2873 22 6 2.3293 -1.0606 -4.0928 23 6 3.4363 -0.5200 -3.1806 24 8 2.8424 0.1175 -2.0458 25 1 -0.3634 -1.0275 0.0194 26 1 -0.3633 0.5306 0.8802 27 1 -0.3633 0.4969 -0.8995 28 1 3.4615 -2.1967 1.4292 29 1 4.0735 -0.6620 0.7329 30 1 3.8354 -2.0077 -1.2511 31 1 2.3618 -2.8196 -0.6255 32 1 0.4001 -2.1087 -1.4581 33 1 0.1751 -0.5384 -2.2710 34 1 -0.0136 -3.5692 -2.0501 35 1 -0.4355 -5.3460 -4.2046 36 1 1.0318 -5.8563 -3.3358 37 1 -1.0274 -8.9065 -3.4741 38 1 1.7717 -0.2293 -4.5241 39 1 2.7711 -1.6582 -4.8902 40 1 4.0398 0.2027 -3.7297 41 1 4.0680 -1.3431 -2.8467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350041823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:23 Heat of formation + Delta-G solvation = -126.010770 kcal Electronic energy + Delta-G solvation = -24041.744738 eV Core-core repulsion = 20535.468718 eV Total energy + Delta-G solvation = -3506.276020 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.23299 -40.61237 -38.68354 -36.27069 -35.92163 -34.38941 -33.86850 -32.35597 -30.61576 -29.06317 -27.51857 -26.23182 -25.11312 -24.01388 -22.71857 -21.60063 -20.28385 -19.84481 -18.32957 -18.04022 -17.47179 -17.13353 -16.89189 -16.65700 -16.28665 -16.22727 -15.68458 -15.26088 -15.18007 -14.90102 -14.72879 -14.11792 -14.00539 -13.84906 -13.54451 -13.37234 -13.00110 -12.92745 -12.69395 -12.46542 -12.45255 -12.26434 -12.22220 -11.94394 -11.69925 -11.51757 -11.22473 -11.10053 -10.80827 -10.71037 -10.04573 -9.40443 -8.29506 -6.46346 1.42404 1.46934 1.53799 1.59898 2.11564 2.37062 2.44447 2.78923 3.02980 3.05408 3.32993 3.47976 3.72011 3.86677 3.99185 4.06337 4.11129 4.19142 4.34583 4.38013 4.45630 4.50310 4.63752 4.69677 4.74734 4.82790 4.89253 4.96311 5.01960 5.05397 5.24237 5.27879 5.37864 5.45925 5.62163 5.73307 5.81704 6.00055 6.10666 6.64052 7.06978 7.23651 7.59824 8.82486 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.005125 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.189868 B = 5462.031755 C = 6446.056336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.093 3.907 3 H 0.092 0.908 4 O -0.385 6.385 5 C 0.054 3.946 6 C -0.183 4.183 7 C 0.081 3.919 8 C 0.092 3.908 9 N -0.631 5.631 10 C 0.697 3.303 11 O -0.642 6.642 12 N -0.723 5.723 13 C 0.287 3.713 14 C -0.556 4.556 15 H 0.081 0.919 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.983 3.017 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.262 1.262 22 C 0.090 3.910 23 C 0.051 3.949 24 O -0.363 6.363 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.400 0.600 35 H -0.014 1.014 36 H -0.014 1.014 37 H 0.269 0.731 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.142 0.858 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.267 19.277 8.324 21.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.109 0.891 4 O -0.304 6.304 5 C -0.023 4.023 6 C -0.221 4.221 7 C 0.040 3.960 8 C -0.031 4.031 9 N -0.369 5.369 10 C 0.398 3.602 11 O -0.525 6.525 12 N -0.378 5.378 13 C 0.164 3.836 14 C -0.594 4.594 15 H 0.099 0.901 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.210 1.210 21 H -0.187 1.187 22 C -0.032 4.032 23 C -0.026 4.026 24 O -0.282 6.282 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.237 0.763 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.160 0.840 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.453 18.958 7.712 21.460 hybrid contribution -0.393 -1.137 0.046 1.204 sum 6.061 17.822 7.758 20.360 Atomic orbital electron populations 1.22117 0.91716 1.03567 1.04204 1.22572 0.96106 0.96128 0.81719 0.89053 1.88942 1.40539 1.67974 1.32979 1.23602 0.87546 0.96956 0.94147 1.23689 1.01410 0.98669 0.98341 1.22677 0.90951 0.90648 0.91705 1.22603 0.96326 0.99535 0.84626 1.47354 1.51411 1.12868 1.25311 1.16153 0.79499 0.81018 0.83510 1.90828 1.62258 1.75052 1.24315 1.45479 1.54301 1.13009 1.24991 1.18420 0.94078 0.76122 0.95015 1.21524 1.33226 0.97414 1.07253 0.90093 1.26023 0.97322 0.97606 0.98315 1.70130 1.46127 1.10301 1.30183 0.85229 0.78812 0.77004 0.78327 1.18652 1.20963 1.18686 1.22280 0.91926 0.94429 0.94606 1.23211 0.93917 0.99157 0.86323 1.87845 1.66148 1.35672 1.38512 0.91802 0.90294 0.89080 0.87768 0.90531 0.89345 0.91106 0.89245 0.88065 0.76309 0.99595 0.99571 0.92181 0.89404 0.89669 0.84044 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 8.38 71.98 0.60 -1.95 16 2 C 0.09 1.78 3.88 30.78 0.12 1.90 16 3 H 0.09 1.63 7.97 -2.39 -0.02 1.61 16 4 O -0.38 -8.68 11.21 -148.98 -1.67 -10.35 16 5 C 0.05 1.05 7.73 72.70 0.56 1.61 16 6 C -0.18 -4.17 6.04 31.75 0.19 -3.98 16 7 C 0.08 1.73 0.99 -10.28 -0.01 1.72 16 8 C 0.09 2.19 4.01 86.12 0.35 2.54 16 9 N -0.63 -19.45 2.89 -836.26 -2.42 -21.87 16 10 C 0.70 29.81 8.31 179.06 1.49 31.30 16 11 O -0.64 -33.39 15.85 -3.98 -0.06 -33.45 16 12 N -0.72 -31.99 5.46 -482.30 -2.64 -34.63 16 13 C 0.29 16.04 5.43 85.64 0.47 16.50 16 14 C -0.56 -30.47 9.28 25.60 0.24 -30.23 16 15 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 16 C 0.01 0.40 5.46 84.65 0.46 0.87 16 17 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 18 Si 0.98 42.27 29.54 68.60 2.03 44.30 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 22 C 0.09 2.25 6.60 86.35 0.57 2.82 16 23 C 0.05 0.96 6.73 72.08 0.49 1.45 16 24 O -0.36 -7.45 10.17 -148.98 -1.51 -8.96 16 25 H 0.06 1.13 6.88 -2.39 -0.02 1.11 16 26 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.09 1.19 6.71 -2.39 -0.02 1.17 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.09 1.99 5.96 -2.38 -0.01 1.97 16 31 H 0.07 1.90 7.69 -2.38 -0.02 1.89 16 32 H 0.09 2.24 4.57 -2.38 -0.01 2.23 16 33 H 0.10 2.03 6.31 -2.39 -0.02 2.01 16 34 H 0.40 15.06 5.85 -92.71 -0.54 14.52 16 35 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 36 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 37 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 2.46 7.12 -2.38 -0.02 2.44 16 40 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.12 6.12 -2.39 -0.01 1.11 16 Total: -1.00 -73.05 320.64 0.04 -73.01 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.51 Total: 23.18 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 5.52 Total: 24.56 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -4.77 Total: -112.27 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -3.25 Total: -52.77 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -73.05 0.04 -73.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350041823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.999 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds