Wall clock time and date at job start Tue Mar 31 2020 03:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 116.99987 * 2 1 4 4 O 1.20833 * 119.99805 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00255 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47146 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00094 * 263.16342 * 6 5 3 8 8 H 1.08005 * 119.99849 * 141.90965 * 7 6 5 9 9 C 1.38952 * 120.00169 * 321.91572 * 7 6 5 10 10 N 1.31407 * 119.99887 * 158.64291 * 9 7 6 11 11 Si 1.86800 * 119.99905 * 338.64842 * 9 7 6 12 12 H 1.48496 * 109.47406 * 95.96740 * 11 9 7 13 13 H 1.48498 * 109.46919 * 215.97178 * 11 9 7 14 14 H 1.48498 * 109.46877 * 335.96987 * 11 9 7 15 15 C 1.34771 * 119.99986 * 83.16980 * 6 5 3 16 16 O 1.21296 * 120.00033 * 359.97438 * 15 6 5 17 17 C 1.50704 * 120.00104 * 179.97438 * 15 6 5 18 18 H 1.08997 * 110.28790 * 57.87308 * 17 15 6 19 19 C 1.54377 * 110.32242 * 295.63284 * 17 15 6 20 20 N 1.48558 * 104.59665 * 264.95915 * 19 17 15 21 21 C 1.46898 * 110.99905 * 200.96362 * 20 19 17 22 22 C 1.48722 * 104.28688 * 320.57121 * 20 19 17 23 23 C 1.54261 * 110.32383 * 179.97438 * 17 15 6 24 24 H 1.08998 * 110.32726 * 359.90116 * 23 17 15 25 25 C 1.52998 * 110.32558 * 237.79055 * 23 17 15 26 26 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47399 * 300.00321 * 1 2 3 28 28 H 1.09005 * 109.46718 * 60.00486 * 1 2 3 29 29 H 1.09002 * 109.46832 * 59.99813 * 5 3 2 30 30 H 1.08997 * 109.47101 * 300.00287 * 5 3 2 31 31 H 0.97003 * 119.99942 * 179.97438 * 10 9 7 32 32 H 1.09001 * 110.41050 * 23.74113 * 19 17 15 33 33 H 1.09000 * 110.40995 * 146.05658 * 19 17 15 34 34 H 1.09002 * 109.47443 * 59.99200 * 21 20 19 35 35 H 1.09000 * 109.47370 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.46871 * 299.99813 * 21 20 19 37 37 H 1.09000 * 110.39071 * 280.64135 * 22 20 19 38 38 H 1.08992 * 110.50899 * 158.14880 * 22 20 19 39 39 H 1.08998 * 109.47077 * 61.42783 * 25 23 17 40 40 H 1.09002 * 109.47470 * 181.43141 * 25 23 17 41 41 H 1.08996 * 109.47004 * 301.42918 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.3120 3.2964 -1.1792 8 1 4.0313 4.3256 -1.3476 9 6 5.0078 2.5971 -2.1578 10 7 4.9666 2.9999 -3.4079 11 14 6.0018 1.0843 -1.6962 12 1 5.1877 -0.1346 -1.9345 13 1 7.2319 1.0281 -2.5261 14 1 6.3758 1.1568 -0.2609 15 6 4.0391 3.3661 1.1583 16 8 3.7464 2.8207 2.2015 17 6 4.4669 4.8112 1.1576 18 1 3.8123 5.3988 0.5140 19 6 5.9334 4.9360 0.6919 20 7 6.7246 4.9615 1.9490 21 6 8.0471 5.5608 1.7266 22 6 5.9120 5.7921 2.8773 23 6 4.4524 5.3749 2.5935 24 1 4.1343 4.6069 3.2986 25 6 3.5260 6.5895 2.6783 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 3.9564 0.7806 -0.8892 30 1 3.9557 0.7810 0.8908 31 1 5.4527 2.5119 -4.0910 32 1 6.2136 4.0759 0.0837 33 1 6.0769 5.8597 0.1314 34 1 7.9272 6.5832 1.3683 35 1 8.6052 5.5674 2.6629 36 1 8.5903 4.9768 0.9836 37 1 6.0532 6.8512 2.6616 38 1 6.1748 5.5758 3.9127 39 1 2.5090 6.2891 2.4264 40 1 3.5458 6.9917 3.6912 41 1 3.8633 7.3533 1.9776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362806070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:28 Heat of formation + Delta-G solvation = -97.383641 kcal Electronic energy + Delta-G solvation = -24240.802800 eV Core-core repulsion = 20735.768146 eV Total energy + Delta-G solvation = -3505.034654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13699 -39.39511 -37.55978 -35.84764 -34.90995 -32.91388 -32.05459 -30.14092 -28.40674 -26.77059 -26.34908 -25.11295 -24.13105 -21.32081 -20.84748 -19.86231 -18.85120 -17.42400 -17.24345 -16.54527 -15.89830 -15.40918 -15.27575 -15.11592 -14.94495 -14.09704 -13.92151 -13.73388 -13.22596 -13.00927 -12.77383 -12.62631 -12.58841 -12.22653 -12.05786 -11.83420 -11.67769 -11.53078 -11.27576 -11.01140 -10.95733 -10.61099 -10.41722 -10.37817 -10.33636 -10.15726 -9.99166 -9.87799 -9.30366 -8.66133 -8.08720 -7.96658 -6.57318 -4.18371 2.86950 2.96525 3.03800 3.18816 3.24231 3.76320 4.01486 4.26253 4.44801 4.84362 5.01136 5.18440 5.36510 5.40851 5.45295 5.48212 5.56941 5.66372 5.69207 5.76626 5.79639 5.81486 5.89508 5.92059 5.97469 6.06468 6.10035 6.18068 6.32489 6.44388 6.48521 6.75539 6.85814 6.86837 7.14366 7.26796 7.40642 7.96174 8.14622 8.40349 8.84497 9.21447 9.55106 10.52831 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.007717 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.114627 B = 3627.287615 C = 4825.499800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.450 3.550 4 O -0.491 6.491 5 C 0.110 3.890 6 N -0.453 5.453 7 C -0.339 4.339 8 H 0.107 0.893 9 C 0.067 3.933 10 N -0.852 5.852 11 Si 0.855 3.145 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.251 1.251 15 C 0.513 3.487 16 O -0.584 6.584 17 C -0.083 4.083 18 H 0.096 0.904 19 C 0.051 3.949 20 N -0.518 5.518 21 C 0.017 3.983 22 C 0.039 3.961 23 C -0.095 4.095 24 H 0.102 0.898 25 C -0.140 4.140 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.277 0.723 32 H 0.106 0.894 33 H 0.045 0.955 34 H 0.024 0.976 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 0.998 6.352 6.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.376 6.376 5 C -0.015 4.015 6 N -0.174 5.174 7 C -0.466 4.466 8 H 0.124 0.876 9 C -0.141 4.141 10 N -0.486 5.486 11 Si 0.681 3.319 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.175 1.175 15 C 0.303 3.697 16 O -0.467 6.467 17 C -0.105 4.105 18 H 0.114 0.886 19 C -0.076 4.076 20 N -0.242 5.242 21 C -0.132 4.132 22 C -0.089 4.089 23 C -0.114 4.114 24 H 0.120 0.880 25 C -0.197 4.197 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.059 0.489 6.851 6.868 hybrid contribution 0.150 0.111 -0.643 0.670 sum 0.209 0.600 6.207 6.240 Atomic orbital electron populations 1.23130 0.77617 1.02800 1.02213 1.86526 1.22633 1.34591 1.84928 1.24812 0.92897 0.81159 0.72086 1.90602 1.66620 1.36294 1.44099 1.21373 0.86710 0.88660 1.04767 1.43350 1.58497 1.08175 1.07356 1.19040 1.36112 1.00046 0.91390 0.87604 1.25346 0.96195 0.97929 0.94646 1.69762 1.38478 1.40562 0.99813 0.87234 0.81003 0.82868 0.80801 1.19700 1.20699 1.17465 1.20106 0.78324 0.88817 0.82436 1.90509 1.53543 1.70726 1.31920 1.21700 0.97636 0.94292 0.96829 0.88590 1.23082 0.90917 1.02533 0.91090 1.65443 1.02191 1.46417 1.10119 1.22458 0.92085 0.97165 1.01530 1.23211 0.93177 0.94798 0.97664 1.21979 0.94044 0.98107 0.97268 0.87985 1.21822 0.99695 0.97207 1.01009 0.88756 0.92347 0.92246 0.87480 0.87399 0.91301 0.87593 0.93662 0.95745 0.91837 0.91376 0.94244 0.90698 0.92389 0.92868 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.99 10.57 -39.25 -0.41 -7.41 16 3 C 0.45 10.03 7.98 36.01 0.29 10.32 16 4 O -0.49 -12.16 16.01 -18.76 -0.30 -12.46 16 5 C 0.11 2.48 4.48 -5.19 -0.02 2.46 16 6 N -0.45 -10.90 1.73 -116.09 -0.20 -11.10 16 7 C -0.34 -8.53 7.20 -14.93 -0.11 -8.64 16 8 H 0.11 2.82 7.20 -52.48 -0.38 2.44 16 9 C 0.07 1.69 5.27 -17.47 -0.09 1.59 16 10 N -0.85 -22.57 13.96 55.50 0.77 -21.80 16 11 Si 0.86 19.02 24.99 -169.99 -4.25 14.77 16 12 H -0.27 -5.76 6.72 56.52 0.38 -5.38 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.25 -5.63 7.11 56.52 0.40 -5.22 16 15 C 0.51 12.07 6.71 -10.99 -0.07 11.99 16 16 O -0.58 -14.69 14.95 5.54 0.08 -14.61 16 17 C -0.08 -1.66 2.26 -90.39 -0.20 -1.87 16 18 H 0.10 1.92 7.16 -51.93 -0.37 1.55 16 19 C 0.05 0.98 5.42 -2.18 -0.01 0.97 16 20 N -0.52 -9.02 5.66 -238.06 -1.35 -10.37 16 21 C 0.02 0.23 9.53 60.06 0.57 0.81 16 22 C 0.04 0.61 6.06 -2.06 -0.01 0.60 16 23 C -0.09 -1.64 3.24 -89.21 -0.29 -1.93 16 24 H 0.10 2.00 6.46 -51.93 -0.34 1.66 16 25 C -0.14 -2.01 8.91 37.16 0.33 -1.68 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.11 2.37 3.65 -51.93 -0.19 2.18 16 30 H 0.11 2.28 7.64 -51.93 -0.40 1.88 16 31 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.11 2.29 6.40 -51.93 -0.33 1.96 16 33 H 0.05 0.80 7.97 -51.93 -0.41 0.39 16 34 H 0.02 0.32 7.98 -51.93 -0.41 -0.10 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.55 7.62 -51.93 -0.40 0.15 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -30.19 330.01 -5.42 -35.62 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.19 Total: 6.14 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 1.44 Total: 16.23 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.77 Total: -43.26 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.63 Total: -34.47 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.25 Total: 14.77 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.19 -5.42 -35.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362806070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.768 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds