Wall clock time and date at job start Tue Mar 31 2020 03:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 116.99987 * 2 1 4 4 O 1.20833 * 119.99805 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00255 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47146 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00094 * 263.16342 * 6 5 3 8 8 H 1.08005 * 119.99849 * 141.90965 * 7 6 5 9 9 C 1.38952 * 120.00169 * 321.91572 * 7 6 5 10 10 N 1.31407 * 119.99887 * 158.64291 * 9 7 6 11 11 Si 1.86800 * 119.99905 * 338.64842 * 9 7 6 12 12 H 1.48496 * 109.47406 * 95.96740 * 11 9 7 13 13 H 1.48498 * 109.46919 * 215.97178 * 11 9 7 14 14 H 1.48498 * 109.46877 * 335.96987 * 11 9 7 15 15 C 1.34771 * 119.99986 * 83.16980 * 6 5 3 16 16 O 1.21296 * 120.00033 * 359.97438 * 15 6 5 17 17 C 1.50704 * 120.00104 * 179.97438 * 15 6 5 18 18 H 1.08997 * 110.28790 * 57.87308 * 17 15 6 19 19 C 1.54377 * 110.32242 * 295.63284 * 17 15 6 20 20 N 1.48558 * 104.59665 * 264.95915 * 19 17 15 21 21 C 1.46898 * 110.99905 * 200.96362 * 20 19 17 22 22 C 1.48722 * 104.28688 * 320.57121 * 20 19 17 23 23 C 1.54261 * 110.32383 * 179.97438 * 17 15 6 24 24 H 1.08998 * 110.32726 * 359.90116 * 23 17 15 25 25 C 1.52998 * 110.32558 * 237.79055 * 23 17 15 26 26 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47399 * 300.00321 * 1 2 3 28 28 H 1.09005 * 109.46718 * 60.00486 * 1 2 3 29 29 H 1.09002 * 109.46832 * 59.99813 * 5 3 2 30 30 H 1.08997 * 109.47101 * 300.00287 * 5 3 2 31 31 H 0.97003 * 119.99942 * 179.97438 * 10 9 7 32 32 H 1.09001 * 110.41050 * 23.74113 * 19 17 15 33 33 H 1.09000 * 110.40995 * 146.05658 * 19 17 15 34 34 H 1.09002 * 109.47443 * 59.99200 * 21 20 19 35 35 H 1.09000 * 109.47370 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.46871 * 299.99813 * 21 20 19 37 37 H 1.09000 * 110.39071 * 280.64135 * 22 20 19 38 38 H 1.08992 * 110.50899 * 158.14880 * 22 20 19 39 39 H 1.08998 * 109.47077 * 61.42783 * 25 23 17 40 40 H 1.09002 * 109.47470 * 181.43141 * 25 23 17 41 41 H 1.08996 * 109.47004 * 301.42918 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.3120 3.2964 -1.1792 8 1 4.0313 4.3256 -1.3476 9 6 5.0078 2.5971 -2.1578 10 7 4.9666 2.9999 -3.4079 11 14 6.0018 1.0843 -1.6962 12 1 5.1877 -0.1346 -1.9345 13 1 7.2319 1.0281 -2.5261 14 1 6.3758 1.1568 -0.2609 15 6 4.0391 3.3661 1.1583 16 8 3.7464 2.8207 2.2015 17 6 4.4669 4.8112 1.1576 18 1 3.8123 5.3988 0.5140 19 6 5.9334 4.9360 0.6919 20 7 6.7246 4.9615 1.9490 21 6 8.0471 5.5608 1.7266 22 6 5.9120 5.7921 2.8773 23 6 4.4524 5.3749 2.5935 24 1 4.1343 4.6069 3.2986 25 6 3.5260 6.5895 2.6783 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 3.9564 0.7806 -0.8892 30 1 3.9557 0.7810 0.8908 31 1 5.4527 2.5119 -4.0910 32 1 6.2136 4.0759 0.0837 33 1 6.0769 5.8597 0.1314 34 1 7.9272 6.5832 1.3683 35 1 8.6052 5.5674 2.6629 36 1 8.5903 4.9768 0.9836 37 1 6.0532 6.8512 2.6616 38 1 6.1748 5.5758 3.9127 39 1 2.5090 6.2891 2.4264 40 1 3.5458 6.9917 3.6912 41 1 3.8633 7.3533 1.9776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362806070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:28 Heat of formation + Delta-G solvation = -118.288579 kcal Electronic energy + Delta-G solvation = -24241.709306 eV Core-core repulsion = 20735.768146 eV Total energy + Delta-G solvation = -3505.941160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.85867 -40.99782 -39.11522 -37.54146 -36.78685 -34.24692 -33.99592 -31.70001 -29.91813 -28.02227 -27.71894 -26.96463 -25.55476 -22.89979 -22.31226 -21.39992 -20.60425 -19.15382 -18.98624 -18.26516 -17.50605 -17.12939 -16.96048 -16.57526 -16.51676 -15.63174 -15.40462 -15.25765 -14.78646 -14.61057 -14.37798 -14.19124 -13.94915 -13.72552 -13.50871 -13.25324 -13.01751 -12.95819 -12.90235 -12.67686 -12.42744 -12.19170 -12.00117 -11.84044 -11.81032 -11.70608 -11.66509 -11.44501 -11.16249 -10.51043 -9.90080 -9.36719 -8.53141 -6.17291 1.10753 1.18394 1.32052 1.44000 1.49025 1.96896 2.15680 2.52078 2.93872 3.17095 3.66017 3.77440 3.84088 3.92800 4.01707 4.18765 4.27947 4.29003 4.29285 4.38425 4.53633 4.58964 4.62490 4.62609 4.67146 4.75468 4.83741 4.92874 5.02278 5.08955 5.19787 5.25542 5.27220 5.29451 5.48716 5.90817 6.03077 6.14318 6.18519 6.69559 6.90086 7.29302 7.66386 8.60545 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.007717 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.114627 B = 3627.287615 C = 4825.499800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.452 3.548 4 O -0.524 6.524 5 C 0.101 3.899 6 N -0.461 5.461 7 C -0.335 4.335 8 H 0.081 0.919 9 C 0.035 3.965 10 N -0.888 5.888 11 Si 0.904 3.096 12 H -0.251 1.251 13 H -0.276 1.276 14 H -0.256 1.256 15 C 0.504 3.496 16 O -0.605 6.605 17 C -0.087 4.087 18 H 0.088 0.912 19 C 0.061 3.939 20 N -0.540 5.540 21 C 0.016 3.984 22 C 0.047 3.953 23 C -0.093 4.093 24 H 0.076 0.924 25 C -0.133 4.133 26 H 0.141 0.859 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.282 0.718 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 0.733 7.352 7.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.294 3.706 4 O -0.412 6.412 5 C -0.024 4.024 6 N -0.182 5.182 7 C -0.462 4.462 8 H 0.098 0.902 9 C -0.170 4.170 10 N -0.524 5.524 11 Si 0.728 3.272 12 H -0.177 1.177 13 H -0.202 1.202 14 H -0.180 1.180 15 C 0.295 3.705 16 O -0.490 6.490 17 C -0.108 4.108 18 H 0.106 0.894 19 C -0.067 4.067 20 N -0.264 5.264 21 C -0.132 4.132 22 C -0.081 4.081 23 C -0.112 4.112 24 H 0.094 0.906 25 C -0.191 4.191 26 H 0.159 0.841 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.600 0.200 7.850 7.876 hybrid contribution -0.111 0.157 -0.927 0.947 sum 0.488 0.357 6.923 6.949 Atomic orbital electron populations 1.23564 0.74833 1.05903 1.02206 1.86491 1.25216 1.32401 1.84081 1.24660 0.92872 0.81633 0.71405 1.90585 1.67272 1.37542 1.45830 1.21468 0.87445 0.88000 1.05456 1.43433 1.58815 1.08839 1.07133 1.18788 1.36315 0.99304 0.91777 0.90174 1.25813 0.96549 1.00429 0.94258 1.69821 1.39599 1.42290 1.00694 0.86450 0.80009 0.80659 0.80123 1.17682 1.20151 1.17970 1.20744 0.77632 0.90124 0.81950 1.90478 1.54452 1.71599 1.32456 1.21780 0.98120 0.92070 0.98843 0.89357 1.22853 0.90425 1.01625 0.91822 1.65392 1.03477 1.48244 1.09333 1.22522 0.90433 0.97571 1.02654 1.23223 0.91219 0.95751 0.97901 1.21964 0.96284 0.98482 0.94472 0.90553 1.21775 0.98125 0.96187 1.02987 0.84079 0.92325 0.92396 0.87092 0.86237 0.90802 0.90642 0.92651 0.94349 0.89772 0.91842 0.91861 0.89329 0.93774 0.90263 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.37 -13.34 10.57 -51.39 -0.54 -13.88 16 3 C 0.45 20.14 7.98 71.24 0.57 20.71 16 4 O -0.52 -26.33 16.01 21.94 0.35 -25.98 16 5 C 0.10 4.55 4.48 85.63 0.38 4.94 16 6 N -0.46 -22.61 1.73 -639.59 -1.10 -23.71 16 7 C -0.33 -17.30 7.20 84.04 0.60 -16.70 16 8 H 0.08 4.48 7.20 -2.91 -0.02 4.46 16 9 C 0.03 1.77 5.27 84.93 0.45 2.22 16 10 N -0.89 -47.71 13.96 21.66 0.30 -47.40 16 11 Si 0.90 38.94 24.99 68.60 1.71 40.65 16 12 H -0.25 -10.01 6.72 99.48 0.67 -9.34 16 13 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 15 C 0.50 24.22 6.71 87.66 0.59 24.81 16 16 O -0.60 -30.98 14.95 -3.08 -0.05 -31.02 16 17 C -0.09 -3.51 2.26 -10.64 -0.02 -3.54 16 18 H 0.09 3.66 7.16 -2.39 -0.02 3.64 16 19 C 0.06 2.32 5.42 86.45 0.47 2.79 16 20 N -0.54 -18.07 5.66 -907.08 -5.13 -23.20 16 21 C 0.02 0.43 9.53 127.69 1.22 1.64 16 22 C 0.05 1.33 6.06 86.44 0.52 1.86 16 23 C -0.09 -3.14 3.24 -9.88 -0.03 -3.17 16 24 H 0.08 3.00 6.46 -2.39 -0.02 2.98 16 25 C -0.13 -3.62 8.91 71.98 0.64 -2.98 16 26 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 28 H 0.06 1.61 8.13 -2.38 -0.02 1.59 16 29 H 0.11 4.84 3.65 -2.39 -0.01 4.83 16 30 H 0.12 5.02 7.64 -2.39 -0.02 5.00 16 31 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.08 3.34 6.40 -2.39 -0.02 3.32 16 33 H 0.06 1.95 7.97 -2.39 -0.02 1.93 16 34 H 0.04 0.89 7.98 -2.39 -0.02 0.87 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.53 7.62 -2.39 -0.02 1.51 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 Total: -1.00 -66.02 330.01 3.11 -62.91 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.99 Total: 27.10 kcal Atomic # 6 Polarization: 27.94 SS G_CDS: 6.58 Total: 34.53 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -5.93 Total: -94.32 kcal Atomic # 8 Polarization: -70.64 SS G_CDS: -0.24 Total: -70.88 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.71 Total: 40.65 kcal Total: -66.02 3.11 -62.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362806070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.380 kcal (2) G-P(sol) polarization free energy of solvation -66.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds