Wall clock time and date at job start Tue Mar 31 2020 03:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.50914 * 2 1 4 4 C 1.53286 * 109.50633 * 120.09458 * 2 1 3 5 5 N 1.47160 * 108.52408 * 172.79132 * 4 2 1 6 6 C 1.34775 * 121.05234 * 128.96001 * 5 4 2 7 7 O 1.21581 * 119.99721 * 4.95864 * 6 5 4 8 8 N 1.34775 * 120.00236 * 184.95884 * 6 5 4 9 9 C 1.46496 * 120.00044 * 174.90862 * 8 6 5 10 10 C 1.50697 * 109.47132 * 180.02562 * 9 8 6 11 11 H 1.08007 * 120.00070 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00349 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99446 * 0.28340 * 12 10 9 14 14 Si 1.86796 * 120.00127 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47033 * 60.00769 * 14 12 10 16 16 H 1.48498 * 109.47037 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47397 * 300.00301 * 14 12 10 18 18 C 1.47288 * 117.89757 * 309.22691 * 5 4 2 19 19 C 1.52192 * 108.63313 * 49.22252 * 18 5 4 20 20 C 1.53975 * 109.98762 * 72.01328 * 19 18 5 21 21 C 1.54608 * 103.88321 * 118.23038 * 20 19 18 22 22 O 1.44467 * 104.81883 * 23.89695 * 21 20 19 23 23 C 1.44552 * 105.36994 * 319.84684 * 22 21 20 24 24 O 1.42217 * 110.92279 * 309.56392 * 19 18 5 25 25 H 1.08999 * 109.46938 * 299.90969 * 1 2 3 26 26 H 1.09004 * 109.46891 * 59.90277 * 1 2 3 27 27 H 1.08992 * 109.47470 * 179.90503 * 1 2 3 28 28 H 1.08995 * 109.63075 * 53.07727 * 4 2 1 29 29 H 1.08998 * 109.62750 * 292.49495 * 4 2 1 30 30 H 0.97005 * 119.99679 * 354.91200 * 8 6 5 31 31 H 1.09001 * 109.47201 * 60.00227 * 9 8 6 32 32 H 1.08994 * 109.47331 * 300.00209 * 9 8 6 33 33 H 0.97002 * 120.00182 * 359.71755 * 13 12 10 34 34 H 1.08997 * 109.67469 * 169.01430 * 18 5 4 35 35 H 1.08998 * 109.67616 * 289.55909 * 18 5 4 36 36 H 1.09007 * 110.54636 * 236.83218 * 20 19 18 37 37 H 1.08997 * 110.54257 * 359.62608 * 20 19 18 38 38 H 1.09004 * 110.37041 * 142.73065 * 21 20 19 39 39 H 1.09000 * 110.36511 * 265.06122 * 21 20 19 40 40 H 1.08999 * 110.39512 * 281.17538 * 23 22 21 41 41 H 1.08998 * 110.39560 * 158.78510 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 1.2501 5 7 3.5029 -0.8652 1.1437 6 6 4.3134 -0.4808 2.1495 7 8 3.8378 -0.0935 3.1993 8 7 5.6511 -0.5256 1.9917 9 6 6.5304 -0.0041 3.0409 10 6 7.9679 -0.1713 2.6208 11 1 8.2031 -0.6208 1.6672 12 6 8.9830 0.2504 3.4531 13 7 8.6968 0.7935 4.6161 14 14 10.7649 0.0437 2.9319 15 1 11.0015 0.7910 1.6706 16 1 11.6562 0.5723 3.9956 17 1 11.0535 -1.3968 2.7155 18 6 4.0517 -1.4338 -0.0992 19 6 3.4258 -0.7103 -1.2829 20 6 3.9905 0.7185 -1.3848 21 6 4.6925 0.7427 -2.7621 22 8 4.0400 -0.2943 -3.5276 23 6 3.8415 -1.3866 -2.6018 24 8 2.0089 -0.6767 -1.1661 25 1 -0.3633 0.5124 0.8908 26 1 -0.3633 0.5154 -0.8891 27 1 -0.3634 -1.0276 -0.0017 28 1 1.5828 -1.7109 1.3154 29 1 1.7939 -0.1426 2.1378 30 1 6.0317 -0.9033 1.1832 31 1 6.3560 -0.5522 3.9668 32 1 6.3193 1.0534 3.1995 33 1 7.7715 0.9012 4.8866 34 1 5.1332 -1.2991 -0.1182 35 1 3.8125 -2.4958 -0.1539 36 1 3.1844 1.4516 -1.3533 37 1 4.7086 0.9039 -0.5860 38 1 4.5544 1.7119 -3.2414 39 1 5.7539 0.5213 -2.6508 40 1 4.7687 -1.9436 -2.4672 41 1 3.0494 -2.0460 -2.9565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390833342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:03 Heat of formation + Delta-G solvation = -111.852281 kcal Electronic energy + Delta-G solvation = -23877.312027 eV Core-core repulsion = 20371.649966 eV Total energy + Delta-G solvation = -3505.662062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08221 -39.19798 -37.80920 -34.68584 -34.62105 -33.40553 -32.34125 -30.86315 -29.39329 -27.45723 -26.30769 -25.19184 -23.22841 -22.71351 -22.00743 -20.33295 -19.12242 -18.38998 -17.42362 -16.70908 -16.55569 -16.14125 -15.65508 -15.30429 -15.06587 -14.56708 -14.32426 -14.00943 -13.79431 -13.57059 -13.30291 -12.83238 -12.78581 -12.56434 -12.30009 -12.08721 -11.98086 -11.83256 -11.62530 -11.52353 -11.16635 -11.01843 -10.82326 -10.72846 -10.19430 -10.13368 -9.96850 -9.63036 -8.84127 -8.76669 -8.49778 -7.95114 -6.55536 -4.29420 2.84922 3.26613 3.34716 3.36227 3.55434 3.64105 3.74249 4.19913 4.37758 4.43491 4.49632 4.59576 4.71265 4.84718 4.91919 5.00823 5.08837 5.13776 5.21985 5.23602 5.35018 5.43409 5.50565 5.55538 5.58142 5.63043 5.74108 5.76653 5.82775 5.96919 6.44599 6.51244 6.81068 7.02008 7.19529 7.22687 7.32724 7.72155 8.22614 8.52180 8.69553 9.10308 9.44666 10.84614 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.004883 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.843989 B = 5733.349597 C = 6852.830657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.065 0.935 4 C 0.104 3.896 5 N -0.639 5.639 6 C 0.700 3.300 7 O -0.595 6.595 8 N -0.723 5.723 9 C 0.257 3.743 10 C -0.623 4.623 11 H 0.056 0.944 12 C 0.024 3.976 13 N -0.900 5.900 14 Si 1.075 2.925 15 H -0.286 1.286 16 H -0.280 1.280 17 H -0.286 1.286 18 C 0.095 3.905 19 C 0.077 3.923 20 C -0.180 4.180 21 C 0.047 3.953 22 O -0.369 6.369 23 C 0.062 3.938 24 O -0.359 6.359 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.387 0.613 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.273 0.727 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.323 -3.344 -14.730 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.012 3.988 3 H 0.083 0.917 4 C -0.020 4.020 5 N -0.379 5.379 6 C 0.401 3.599 7 O -0.474 6.474 8 N -0.377 5.377 9 C 0.135 3.865 10 C -0.661 4.661 11 H 0.074 0.926 12 C -0.182 4.182 13 N -0.535 5.535 14 Si 0.902 3.098 15 H -0.213 1.213 16 H -0.205 1.205 17 H -0.213 1.213 18 C -0.030 4.030 19 C 0.036 3.964 20 C -0.218 4.218 21 C -0.030 4.030 22 O -0.288 6.288 23 C -0.015 4.015 24 O -0.278 6.278 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.222 0.778 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.230 -2.829 -13.759 17.984 hybrid contribution -1.182 -0.346 -0.427 1.304 sum -12.412 -3.175 -14.186 19.115 Atomic orbital electron populations 1.21703 0.92077 1.03203 1.02839 1.22591 0.95374 0.95930 0.84941 0.91669 1.22092 0.79390 1.01350 0.99178 1.47309 1.06185 1.68265 1.16096 1.16019 0.82081 0.78783 0.83020 1.90864 1.75201 1.55001 1.26354 1.45682 1.03318 1.64953 1.23760 1.19067 0.87991 0.93549 0.85872 1.22026 0.90681 1.46497 1.06942 0.92626 1.25865 1.05474 0.93269 0.93597 1.70756 1.22822 1.39753 1.20148 0.83453 0.74205 0.76418 0.75680 1.21285 1.20513 1.21272 1.22028 0.99129 0.97977 0.83826 1.22648 0.82726 0.95260 0.95790 1.23546 1.01856 0.97320 0.99068 1.23439 0.96476 0.92513 0.90548 1.89175 1.79973 1.26238 1.33404 1.23284 1.01289 0.90323 0.86621 1.87862 1.18993 1.77532 1.43398 0.90620 0.91504 0.91538 0.91292 0.88039 0.77821 0.96585 0.96806 0.91664 0.88979 0.90563 0.89753 0.89325 0.88817 0.91546 0.90250 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.57 37.16 0.36 -0.89 16 2 C 0.07 0.81 3.11 -26.58 -0.08 0.73 16 3 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 4 C 0.10 1.40 5.90 -3.53 -0.02 1.38 16 5 N -0.64 -10.01 2.92 -178.57 -0.52 -10.53 16 6 C 0.70 14.46 8.31 -86.92 -0.72 13.73 16 7 O -0.60 -14.65 15.85 5.29 0.08 -14.56 16 8 N -0.72 -15.42 5.46 -66.42 -0.36 -15.79 16 9 C 0.26 6.75 4.74 -5.20 -0.02 6.73 16 10 C -0.62 -16.87 9.28 -34.44 -0.32 -17.18 16 11 H 0.06 1.42 7.60 -52.48 -0.40 1.02 16 12 C 0.02 0.67 5.46 -17.82 -0.10 0.57 16 13 N -0.90 -27.00 13.65 55.43 0.76 -26.24 16 14 Si 1.08 24.02 29.90 -169.99 -5.08 18.94 16 15 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.09 1.18 4.92 -4.02 -0.02 1.16 16 19 C 0.08 0.89 1.05 -90.03 -0.09 0.80 16 20 C -0.18 -2.14 5.76 -25.38 -0.15 -2.28 16 21 C 0.05 0.50 7.65 38.00 0.29 0.79 16 22 O -0.37 -4.48 11.65 -35.23 -0.41 -4.89 16 23 C 0.06 0.64 6.93 37.65 0.26 0.90 16 24 O -0.36 -4.41 9.84 -35.23 -0.35 -4.75 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 1.51 7.11 -51.93 -0.37 1.14 16 30 H 0.39 7.18 5.85 -40.82 -0.24 6.94 16 31 H 0.02 0.47 8.00 -51.93 -0.42 0.05 16 32 H 0.01 0.40 8.01 -51.93 -0.42 -0.02 16 33 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 34 H 0.09 1.12 5.59 -51.93 -0.29 0.83 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.02 6.64 -51.92 -0.34 0.67 16 37 H 0.09 1.19 7.65 -51.93 -0.40 0.79 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.67 7.84 -51.93 -0.41 0.26 16 41 H 0.11 0.99 8.08 -51.93 -0.42 0.57 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -33.34 326.36 -7.67 -41.01 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.08 Total: 5.47 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.62 Total: 6.43 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.13 Total: -52.55 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.67 Total: -24.21 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.08 Total: 18.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.34 -7.67 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390833342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.843 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds