Wall clock time and date at job start Tue Mar 31 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.50914 * 2 1 4 4 C 1.53286 * 109.50633 * 120.09458 * 2 1 3 5 5 N 1.47160 * 108.52408 * 172.79132 * 4 2 1 6 6 C 1.34775 * 121.05234 * 128.96001 * 5 4 2 7 7 O 1.21581 * 119.99721 * 4.95864 * 6 5 4 8 8 N 1.34775 * 120.00236 * 184.95884 * 6 5 4 9 9 C 1.46496 * 120.00044 * 174.90862 * 8 6 5 10 10 C 1.50697 * 109.47132 * 180.02562 * 9 8 6 11 11 H 1.08007 * 120.00070 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00349 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99446 * 0.28340 * 12 10 9 14 14 Si 1.86796 * 120.00127 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47033 * 60.00769 * 14 12 10 16 16 H 1.48498 * 109.47037 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47397 * 300.00301 * 14 12 10 18 18 C 1.47288 * 117.89757 * 309.22691 * 5 4 2 19 19 C 1.52192 * 108.63313 * 49.22252 * 18 5 4 20 20 C 1.53975 * 109.98762 * 72.01328 * 19 18 5 21 21 C 1.54608 * 103.88321 * 118.23038 * 20 19 18 22 22 O 1.44467 * 104.81883 * 23.89695 * 21 20 19 23 23 C 1.44552 * 105.36994 * 319.84684 * 22 21 20 24 24 O 1.42217 * 110.92279 * 309.56392 * 19 18 5 25 25 H 1.08999 * 109.46938 * 299.90969 * 1 2 3 26 26 H 1.09004 * 109.46891 * 59.90277 * 1 2 3 27 27 H 1.08992 * 109.47470 * 179.90503 * 1 2 3 28 28 H 1.08995 * 109.63075 * 53.07727 * 4 2 1 29 29 H 1.08998 * 109.62750 * 292.49495 * 4 2 1 30 30 H 0.97005 * 119.99679 * 354.91200 * 8 6 5 31 31 H 1.09001 * 109.47201 * 60.00227 * 9 8 6 32 32 H 1.08994 * 109.47331 * 300.00209 * 9 8 6 33 33 H 0.97002 * 120.00182 * 359.71755 * 13 12 10 34 34 H 1.08997 * 109.67469 * 169.01430 * 18 5 4 35 35 H 1.08998 * 109.67616 * 289.55909 * 18 5 4 36 36 H 1.09007 * 110.54636 * 236.83218 * 20 19 18 37 37 H 1.08997 * 110.54257 * 359.62608 * 20 19 18 38 38 H 1.09004 * 110.37041 * 142.73065 * 21 20 19 39 39 H 1.09000 * 110.36511 * 265.06122 * 21 20 19 40 40 H 1.08999 * 110.39512 * 281.17538 * 23 22 21 41 41 H 1.08998 * 110.39560 * 158.78510 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 1.2501 5 7 3.5029 -0.8652 1.1437 6 6 4.3134 -0.4808 2.1495 7 8 3.8378 -0.0935 3.1993 8 7 5.6511 -0.5256 1.9917 9 6 6.5304 -0.0041 3.0409 10 6 7.9679 -0.1713 2.6208 11 1 8.2031 -0.6208 1.6672 12 6 8.9830 0.2504 3.4531 13 7 8.6968 0.7935 4.6161 14 14 10.7649 0.0437 2.9319 15 1 11.0015 0.7910 1.6706 16 1 11.6562 0.5723 3.9956 17 1 11.0535 -1.3968 2.7155 18 6 4.0517 -1.4338 -0.0992 19 6 3.4258 -0.7103 -1.2829 20 6 3.9905 0.7185 -1.3848 21 6 4.6925 0.7427 -2.7621 22 8 4.0400 -0.2943 -3.5276 23 6 3.8415 -1.3866 -2.6018 24 8 2.0089 -0.6767 -1.1661 25 1 -0.3633 0.5124 0.8908 26 1 -0.3633 0.5154 -0.8891 27 1 -0.3634 -1.0276 -0.0017 28 1 1.5828 -1.7109 1.3154 29 1 1.7939 -0.1426 2.1378 30 1 6.0317 -0.9033 1.1832 31 1 6.3560 -0.5522 3.9668 32 1 6.3193 1.0534 3.1995 33 1 7.7715 0.9012 4.8866 34 1 5.1332 -1.2991 -0.1182 35 1 3.8125 -2.4958 -0.1539 36 1 3.1844 1.4516 -1.3533 37 1 4.7086 0.9039 -0.5860 38 1 4.5544 1.7119 -3.2414 39 1 5.7539 0.5213 -2.6508 40 1 4.7687 -1.9436 -2.4672 41 1 3.0494 -2.0460 -2.9565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390833342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:02 Heat of formation + Delta-G solvation = -136.768733 kcal Electronic energy + Delta-G solvation = -23878.392486 eV Core-core repulsion = 20371.649966 eV Total energy + Delta-G solvation = -3506.742520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.19901 -40.61467 -38.85213 -36.55754 -36.02733 -34.63016 -34.08055 -31.81655 -30.31941 -29.15486 -27.50789 -26.55607 -24.70426 -24.08202 -22.98318 -21.74038 -20.43654 -19.92438 -18.69948 -18.26188 -17.67469 -17.39514 -16.64875 -16.52478 -16.37379 -15.79738 -15.59293 -15.44623 -15.21826 -15.00743 -14.77080 -14.37308 -14.01174 -13.73875 -13.65382 -13.26562 -13.25217 -12.92202 -12.69450 -12.54682 -12.52957 -12.41965 -12.07409 -11.91905 -11.84649 -11.34819 -11.17935 -10.92777 -10.81489 -10.77649 -10.17613 -9.51874 -8.79992 -6.55752 1.44503 1.57096 1.64842 1.83817 1.98724 2.36178 2.54543 2.87920 2.88921 3.08324 3.34943 3.49245 3.67737 3.74397 3.87872 3.94015 4.10963 4.16337 4.25630 4.35544 4.41591 4.48640 4.64823 4.65352 4.72184 4.74603 4.76466 4.85529 4.88657 4.94838 4.96392 5.18079 5.27320 5.38344 5.48569 5.67673 5.83756 6.07137 6.07643 6.32231 6.92580 7.26592 7.47496 8.59423 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.004883 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.843989 B = 5733.349597 C = 6852.830657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.075 3.925 3 H 0.054 0.946 4 C 0.099 3.901 5 N -0.629 5.629 6 C 0.697 3.303 7 O -0.642 6.642 8 N -0.717 5.717 9 C 0.273 3.727 10 C -0.627 4.627 11 H 0.076 0.924 12 C -0.030 4.030 13 N -0.929 5.929 14 Si 1.129 2.871 15 H -0.262 1.262 16 H -0.287 1.287 17 H -0.264 1.264 18 C 0.090 3.910 19 C 0.077 3.923 20 C -0.180 4.180 21 C 0.049 3.951 22 O -0.385 6.385 23 C 0.064 3.936 24 O -0.361 6.361 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.403 0.597 31 H -0.019 1.019 32 H -0.018 1.018 33 H 0.254 0.746 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.040 -4.668 -17.429 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.017 3.983 3 H 0.071 0.929 4 C -0.024 4.024 5 N -0.367 5.367 6 C 0.399 3.601 7 O -0.524 6.524 8 N -0.373 5.373 9 C 0.149 3.851 10 C -0.665 4.665 11 H 0.094 0.906 12 C -0.228 4.228 13 N -0.565 5.565 14 Si 0.948 3.052 15 H -0.187 1.187 16 H -0.213 1.213 17 H -0.188 1.188 18 C -0.033 4.033 19 C 0.036 3.964 20 C -0.218 4.218 21 C -0.027 4.027 22 O -0.304 6.304 23 C -0.013 4.013 24 O -0.280 6.280 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.240 0.760 31 H -0.001 1.001 32 H 0.000 1.000 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.004 -4.188 -16.544 20.306 hybrid contribution -1.383 0.056 0.389 1.438 sum -12.387 -4.132 -16.154 20.772 Atomic orbital electron populations 1.21707 0.89690 1.04110 1.03745 1.22594 0.97099 0.94831 0.83768 0.92851 1.22317 0.77963 1.02404 0.99671 1.47285 1.06674 1.66877 1.15839 1.16143 0.82008 0.78526 0.83450 1.90829 1.75927 1.56942 1.28709 1.45281 1.03419 1.65263 1.23300 1.18560 0.89168 0.91328 0.86019 1.22366 0.90695 1.45821 1.07612 0.90584 1.27619 1.10349 0.92030 0.92846 1.70902 1.21495 1.42122 1.21937 0.82803 0.68516 0.77895 0.75977 1.18691 1.21293 1.18849 1.22316 0.99363 0.99238 0.82358 1.22710 0.82431 0.95054 0.96171 1.23505 1.01377 0.97596 0.99348 1.23491 0.96715 0.92924 0.89591 1.89163 1.80205 1.26930 1.34093 1.23440 1.02753 0.89928 0.85201 1.87879 1.19305 1.77445 1.43357 0.89606 0.90741 0.90611 0.89441 0.89846 0.75968 1.00094 1.00018 0.93711 0.88676 0.88147 0.90348 0.91213 0.87823 0.90570 0.88037 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.57 71.98 0.69 -1.42 16 2 C 0.08 1.65 3.11 30.69 0.10 1.74 16 3 H 0.05 1.30 6.51 -2.39 -0.02 1.29 16 4 C 0.10 2.61 5.90 86.35 0.51 3.12 16 5 N -0.63 -19.30 2.92 -837.14 -2.44 -21.75 16 6 C 0.70 29.38 8.31 179.06 1.49 30.87 16 7 O -0.64 -32.95 15.85 -3.97 -0.06 -33.01 16 8 N -0.72 -30.97 5.46 -482.33 -2.63 -33.60 16 9 C 0.27 14.89 4.74 85.63 0.41 15.30 16 10 C -0.63 -33.92 9.28 25.60 0.24 -33.69 16 11 H 0.08 3.73 7.60 -2.91 -0.02 3.71 16 12 C -0.03 -1.65 5.46 84.66 0.46 -1.19 16 13 N -0.93 -57.18 13.65 21.45 0.29 -56.88 16 14 Si 1.13 47.02 29.90 68.60 2.05 49.07 16 15 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 16 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 18 C 0.09 2.05 4.92 85.96 0.42 2.47 16 19 C 0.08 1.63 1.05 -10.41 -0.01 1.62 16 20 C -0.18 -4.07 5.76 31.47 0.18 -3.89 16 21 C 0.05 0.96 7.65 72.53 0.55 1.51 16 22 O -0.39 -8.35 11.65 -148.98 -1.74 -10.09 16 23 C 0.06 1.10 6.93 72.30 0.50 1.60 16 24 O -0.36 -8.05 9.84 -148.98 -1.47 -9.51 16 25 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.08 2.52 7.11 -2.39 -0.02 2.51 16 30 H 0.40 14.57 5.85 -92.70 -0.54 14.03 16 31 H -0.02 -1.15 8.00 -2.39 -0.02 -1.17 16 32 H -0.02 -1.09 8.01 -2.39 -0.02 -1.11 16 33 H 0.25 16.26 7.22 -92.71 -0.67 15.59 16 34 H 0.10 2.11 5.59 -2.39 -0.01 2.09 16 35 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 1.85 6.64 -2.38 -0.02 1.83 16 37 H 0.07 1.84 7.65 -2.39 -0.02 1.82 16 38 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 1.32 7.84 -2.39 -0.02 1.30 16 41 H 0.12 1.78 8.08 -2.39 -0.02 1.76 16 Total: -1.00 -74.04 326.36 0.14 -73.90 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.59 Total: 23.83 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 5.54 Total: 18.03 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -4.78 Total: -112.23 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -3.26 Total: -52.61 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.05 Total: 49.07 kcal Total: -74.04 0.14 -73.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390833342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.868 kcal (2) G-P(sol) polarization free energy of solvation -74.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds