Wall clock time and date at job start Tue Mar 31 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.57719 * 2 1 4 4 C 1.53104 * 109.51920 * 239.84388 * 2 1 3 5 5 N 1.47019 * 109.39722 * 182.57067 * 4 2 1 6 6 C 1.46900 * 111.00114 * 182.96280 * 5 4 2 7 7 C 1.50704 * 109.47041 * 170.15508 * 6 5 4 8 8 O 1.21291 * 120.00048 * 353.71851 * 7 6 5 9 9 N 1.34771 * 119.99735 * 173.72243 * 7 6 5 10 10 C 1.37102 * 120.00049 * 180.02562 * 9 7 6 11 11 H 1.07993 * 119.99763 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99975 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00090 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99990 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47165 * 90.00628 * 14 12 10 16 16 H 1.48508 * 109.46965 * 209.99944 * 14 12 10 17 17 H 1.48494 * 109.47459 * 330.00324 * 14 12 10 18 18 C 1.47168 * 110.64761 * 59.26208 * 5 4 2 19 19 C 1.52256 * 109.35667 * 302.77921 * 18 5 4 20 20 C 1.54605 * 110.22814 * 177.46049 * 19 18 5 21 21 C 1.55073 * 100.88362 * 151.59327 * 20 19 18 22 22 O 1.43710 * 105.20189 * 324.21490 * 21 20 19 23 23 C 1.43411 * 109.93673 * 24.31024 * 22 21 20 24 24 O 1.42056 * 111.31236 * 54.62308 * 19 18 5 25 25 H 1.09000 * 109.46720 * 299.85206 * 1 2 3 26 26 H 1.08994 * 109.46751 * 59.84739 * 1 2 3 27 27 H 1.08995 * 109.47340 * 179.85012 * 1 2 3 28 28 H 1.09005 * 109.48003 * 62.59762 * 4 2 1 29 29 H 1.08994 * 109.48600 * 302.54849 * 4 2 1 30 30 H 1.09003 * 109.47124 * 50.15337 * 6 5 4 31 31 H 1.08998 * 109.47188 * 290.15499 * 6 5 4 32 32 H 0.97003 * 120.00190 * 359.97438 * 9 7 6 33 33 H 0.96993 * 120.00539 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.48786 * 62.73552 * 18 5 4 35 35 H 1.08999 * 109.49265 * 182.78522 * 18 5 4 36 36 H 1.09005 * 111.12941 * 269.49443 * 20 19 18 37 37 H 1.08994 * 111.13559 * 33.68247 * 20 19 18 38 38 H 1.08998 * 110.29597 * 205.28337 * 21 20 19 39 39 H 1.08998 * 110.29708 * 83.14547 * 21 20 19 40 40 H 1.08998 * 109.86266 * 238.35335 * 23 22 21 41 41 H 1.08998 * 109.86246 * 117.27028 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7249 -1.2477 5 7 3.5104 -0.7774 -1.2142 6 6 4.0428 -1.4047 -2.4312 7 6 5.5385 -1.2257 -2.4756 8 8 6.0919 -0.5379 -1.6438 9 7 6.2611 -1.8297 -3.4396 10 6 7.6219 -1.6673 -3.4797 11 1 8.1146 -1.0550 -2.7390 12 6 8.3668 -2.2896 -4.4739 13 7 9.6711 -2.1335 -4.5127 14 14 7.5143 -3.3481 -5.7554 15 1 7.1298 -2.5061 -6.9166 16 1 8.4380 -4.4203 -6.2057 17 1 6.2977 -3.9594 -5.1628 18 6 3.9772 -1.4827 -0.0098 19 6 3.4233 -0.7895 1.2275 20 6 3.8493 -1.5520 2.5031 21 6 3.8742 -0.3985 3.5392 22 8 4.3471 0.7488 2.8144 23 6 4.0749 0.5898 1.4154 24 8 2.0085 -0.6779 1.1669 25 1 -0.3633 0.5115 0.8913 26 1 -0.3632 0.5162 -0.8886 27 1 -0.3634 -1.0276 -0.0027 28 1 1.7172 -0.1876 -2.1390 29 1 1.6420 -1.7388 -1.2687 30 1 3.5946 -0.9361 -3.3074 31 1 3.8042 -2.4682 -2.4259 32 1 5.8185 -2.3800 -4.1046 33 1 10.1912 -2.5682 -5.2064 34 1 3.6283 -2.5151 -0.0350 35 1 5.0666 -1.4676 0.0213 36 1 3.1118 -2.3077 2.7739 37 1 4.8380 -1.9952 2.3844 38 1 4.5562 -0.6377 4.3551 39 1 2.8715 -0.2150 3.9250 40 1 5.0048 0.6402 0.8491 41 1 3.3922 1.3704 1.0799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408349890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:51 Heat of formation + Delta-G solvation = -106.874430 kcal Electronic energy + Delta-G solvation = -23772.085216 eV Core-core repulsion = 20266.639010 eV Total energy + Delta-G solvation = -3505.446206 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73609 -38.62398 -37.73903 -35.43047 -33.91905 -33.30895 -31.71735 -30.73589 -29.44092 -27.80316 -26.33345 -24.74169 -23.03386 -22.60305 -21.55610 -19.49513 -19.38044 -18.31080 -17.26150 -16.46896 -16.10879 -15.88982 -15.28559 -15.03292 -14.89849 -14.65117 -14.14906 -13.91166 -13.78680 -13.51324 -13.16011 -12.85112 -12.63080 -12.57003 -12.40422 -12.12856 -11.90818 -11.74927 -11.57414 -11.39519 -11.25370 -11.09313 -10.97998 -10.63001 -10.34459 -10.01140 -9.60392 -9.56449 -9.38597 -8.62145 -8.22339 -8.10460 -6.34299 -3.85946 2.99037 3.03738 3.12269 3.45788 3.68162 3.69581 3.96162 4.06953 4.44401 4.62462 4.71655 4.82064 4.91051 5.00256 5.07926 5.17800 5.19457 5.28608 5.35394 5.42484 5.50831 5.54867 5.58265 5.67456 5.69421 5.76408 5.84768 5.88036 5.89019 5.96018 6.02120 6.12705 6.22075 6.94795 7.04929 7.08368 7.22461 7.54428 8.10671 8.56262 8.91624 9.38648 9.78602 10.78716 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023131 B = 0.004490 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.205488 B = 6234.469390 C = 7036.333982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 H 0.071 0.929 4 C 0.022 3.978 5 N -0.512 5.512 6 C 0.043 3.957 7 C 0.451 3.549 8 O -0.558 6.558 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.880 5.880 14 Si 0.879 3.121 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.270 1.270 18 C 0.036 3.964 19 C 0.094 3.906 20 C -0.143 4.143 21 C 0.056 3.944 22 O -0.385 6.385 23 C 0.040 3.960 24 O -0.368 6.368 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.370 0.630 33 H 0.274 0.726 34 H 0.037 0.963 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.219 -0.585 8.067 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.089 0.911 4 C -0.107 4.107 5 N -0.237 5.237 6 C -0.088 4.088 7 C 0.236 3.764 8 O -0.440 6.440 9 N -0.229 5.229 10 C -0.434 4.434 11 H 0.138 0.862 12 C -0.161 4.161 13 N -0.520 5.520 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 C -0.092 4.092 19 C 0.054 3.946 20 C -0.181 4.181 21 C -0.021 4.021 22 O -0.305 6.305 23 C -0.036 4.036 24 O -0.287 6.287 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.203 0.797 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.464 0.428 8.764 19.545 hybrid contribution -0.803 -1.907 -1.675 2.662 sum -18.267 -1.479 7.089 19.650 Atomic orbital electron populations 1.21724 0.92692 1.02833 1.02651 1.22216 0.94576 0.96165 0.84149 0.91116 1.22856 0.88430 1.00007 0.99362 1.61870 1.06915 1.53332 1.01553 1.21932 0.95822 0.97678 0.93402 1.19592 0.87519 0.84794 0.84465 1.90540 1.71830 1.41430 1.40181 1.42222 1.08207 1.45295 1.27211 1.19427 0.79790 1.29909 1.14247 0.86201 1.25034 0.95395 0.97886 0.97756 1.69617 1.04792 1.43410 1.34170 0.86684 0.79522 0.80911 0.82326 1.19579 1.20158 1.19604 1.22701 1.03523 0.94543 0.88428 1.22367 0.81487 0.95406 0.95363 1.23202 1.03000 0.98673 0.93219 1.23333 0.99394 0.84622 0.94737 1.88437 1.82096 1.41285 1.18653 1.23648 1.01754 0.96062 0.82175 1.87820 1.19948 1.78275 1.42678 0.91599 0.90851 0.91946 0.89576 0.94145 0.88852 0.93339 0.79746 0.91574 0.94456 0.86830 0.89089 0.88599 0.89818 0.92154 0.88414 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.57 37.16 0.36 -0.88 16 2 C 0.09 1.02 3.18 -26.68 -0.08 0.94 16 3 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 4 C 0.02 0.27 4.91 -3.71 -0.02 0.25 16 5 N -0.51 -8.03 4.30 -236.15 -1.01 -9.04 16 6 C 0.04 0.70 5.45 -4.97 -0.03 0.67 16 7 C 0.45 9.91 7.37 -10.99 -0.08 9.83 16 8 O -0.56 -14.33 14.24 5.55 0.08 -14.25 16 9 N -0.59 -13.72 5.09 -10.96 -0.06 -13.78 16 10 C -0.31 -8.47 10.16 -14.93 -0.15 -8.62 16 11 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 12 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.45 13.96 55.50 0.77 -24.68 16 14 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.34 6.52 56.52 0.37 -4.98 16 18 C 0.04 0.57 3.83 -4.06 -0.02 0.55 16 19 C 0.09 1.34 0.81 -89.79 -0.07 1.27 16 20 C -0.14 -1.74 6.29 -24.79 -0.16 -1.89 16 21 C 0.06 0.68 7.78 38.25 0.30 0.98 16 22 O -0.39 -6.12 11.37 -35.23 -0.40 -6.52 16 23 C 0.04 0.63 6.86 37.52 0.26 0.89 16 24 O -0.37 -5.00 9.96 -35.23 -0.35 -5.36 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.91 8.08 -51.93 -0.42 0.50 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 31 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.37 7.57 5.76 -40.82 -0.24 7.33 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.11 2.14 5.97 -51.93 -0.31 1.83 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 1.14 8.00 -51.93 -0.42 0.73 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 1.79 7.68 -51.93 -0.40 1.39 16 41 H 0.07 1.08 6.32 -51.93 -0.33 0.75 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -32.05 324.45 -6.81 -38.86 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.22 Total: 10.46 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 0.21 Total: 5.03 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.30 Total: -47.50 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.67 Total: -26.12 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.05 -6.81 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408349890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.011 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds