Wall clock time and date at job start Tue Mar 31 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.57719 * 2 1 4 4 C 1.53104 * 109.51920 * 239.84388 * 2 1 3 5 5 N 1.47019 * 109.39722 * 182.57067 * 4 2 1 6 6 C 1.46900 * 111.00114 * 182.96280 * 5 4 2 7 7 C 1.50704 * 109.47041 * 170.15508 * 6 5 4 8 8 O 1.21291 * 120.00048 * 353.71851 * 7 6 5 9 9 N 1.34771 * 119.99735 * 173.72243 * 7 6 5 10 10 C 1.37102 * 120.00049 * 180.02562 * 9 7 6 11 11 H 1.07993 * 119.99763 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99975 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00090 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99990 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47165 * 90.00628 * 14 12 10 16 16 H 1.48508 * 109.46965 * 209.99944 * 14 12 10 17 17 H 1.48494 * 109.47459 * 330.00324 * 14 12 10 18 18 C 1.47168 * 110.64761 * 59.26208 * 5 4 2 19 19 C 1.52256 * 109.35667 * 302.77921 * 18 5 4 20 20 C 1.54605 * 110.22814 * 177.46049 * 19 18 5 21 21 C 1.55073 * 100.88362 * 151.59327 * 20 19 18 22 22 O 1.43710 * 105.20189 * 324.21490 * 21 20 19 23 23 C 1.43411 * 109.93673 * 24.31024 * 22 21 20 24 24 O 1.42056 * 111.31236 * 54.62308 * 19 18 5 25 25 H 1.09000 * 109.46720 * 299.85206 * 1 2 3 26 26 H 1.08994 * 109.46751 * 59.84739 * 1 2 3 27 27 H 1.08995 * 109.47340 * 179.85012 * 1 2 3 28 28 H 1.09005 * 109.48003 * 62.59762 * 4 2 1 29 29 H 1.08994 * 109.48600 * 302.54849 * 4 2 1 30 30 H 1.09003 * 109.47124 * 50.15337 * 6 5 4 31 31 H 1.08998 * 109.47188 * 290.15499 * 6 5 4 32 32 H 0.97003 * 120.00190 * 359.97438 * 9 7 6 33 33 H 0.96993 * 120.00539 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.48786 * 62.73552 * 18 5 4 35 35 H 1.08999 * 109.49265 * 182.78522 * 18 5 4 36 36 H 1.09005 * 111.12941 * 269.49443 * 20 19 18 37 37 H 1.08994 * 111.13559 * 33.68247 * 20 19 18 38 38 H 1.08998 * 110.29597 * 205.28337 * 21 20 19 39 39 H 1.08998 * 110.29708 * 83.14547 * 21 20 19 40 40 H 1.08998 * 109.86266 * 238.35335 * 23 22 21 41 41 H 1.08998 * 109.86246 * 117.27028 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7249 -1.2477 5 7 3.5104 -0.7774 -1.2142 6 6 4.0428 -1.4047 -2.4312 7 6 5.5385 -1.2257 -2.4756 8 8 6.0919 -0.5379 -1.6438 9 7 6.2611 -1.8297 -3.4396 10 6 7.6219 -1.6673 -3.4797 11 1 8.1146 -1.0550 -2.7390 12 6 8.3668 -2.2896 -4.4739 13 7 9.6711 -2.1335 -4.5127 14 14 7.5143 -3.3481 -5.7554 15 1 7.1298 -2.5061 -6.9166 16 1 8.4380 -4.4203 -6.2057 17 1 6.2977 -3.9594 -5.1628 18 6 3.9772 -1.4827 -0.0098 19 6 3.4233 -0.7895 1.2275 20 6 3.8493 -1.5520 2.5031 21 6 3.8742 -0.3985 3.5392 22 8 4.3471 0.7488 2.8144 23 6 4.0749 0.5898 1.4154 24 8 2.0085 -0.6779 1.1669 25 1 -0.3633 0.5115 0.8913 26 1 -0.3632 0.5162 -0.8886 27 1 -0.3634 -1.0276 -0.0027 28 1 1.7172 -0.1876 -2.1390 29 1 1.6420 -1.7388 -1.2687 30 1 3.5946 -0.9361 -3.3074 31 1 3.8042 -2.4682 -2.4259 32 1 5.8185 -2.3800 -4.1046 33 1 10.1912 -2.5682 -5.2064 34 1 3.6283 -2.5151 -0.0350 35 1 5.0666 -1.4676 0.0213 36 1 3.1118 -2.3077 2.7739 37 1 4.8380 -1.9952 2.3844 38 1 4.5562 -0.6377 4.3551 39 1 2.8715 -0.2150 3.9250 40 1 5.0048 0.6402 0.8491 41 1 3.3922 1.3704 1.0799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408349890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:50 Heat of formation + Delta-G solvation = -133.275920 kcal Electronic energy + Delta-G solvation = -23773.230070 eV Core-core repulsion = 20266.639010 eV Total energy + Delta-G solvation = -3506.591060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.86478 -40.28169 -38.95404 -36.72557 -35.82202 -34.32938 -33.75296 -31.74950 -30.62516 -29.09343 -27.44749 -26.51491 -24.17294 -23.78699 -22.57845 -21.25871 -20.55108 -20.19559 -18.37209 -17.88783 -17.42820 -17.00740 -16.83397 -16.42021 -16.16338 -15.81981 -15.60967 -15.40611 -14.97552 -14.88329 -14.62346 -14.28684 -13.99309 -13.84978 -13.42961 -13.35132 -13.10305 -12.87494 -12.79926 -12.61329 -12.42900 -12.37235 -12.15519 -12.07955 -11.97389 -11.50379 -11.37473 -10.73464 -10.57046 -10.31268 -10.23411 -9.34510 -8.41252 -6.02091 1.29251 1.35042 1.43723 1.94928 2.22536 2.41817 2.52013 2.84246 3.07218 3.15333 3.42248 3.66222 3.71267 3.87304 4.04084 4.11816 4.12386 4.23653 4.34762 4.35712 4.36329 4.46240 4.50333 4.63233 4.68537 4.72403 4.75477 4.83696 4.88689 4.91685 5.04978 5.11371 5.29230 5.51809 5.76124 5.92274 5.93925 6.00583 6.18215 6.59441 6.88493 7.39632 7.96741 8.76466 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023131 B = 0.004490 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.205488 B = 6234.469390 C = 7036.333982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.079 3.921 3 H 0.058 0.942 4 C 0.024 3.976 5 N -0.535 5.535 6 C 0.055 3.945 7 C 0.450 3.550 8 O -0.603 6.603 9 N -0.592 5.592 10 C -0.326 4.326 11 H 0.055 0.945 12 C -0.015 4.015 13 N -0.935 5.935 14 Si 0.964 3.036 15 H -0.257 1.257 16 H -0.276 1.276 17 H -0.232 1.232 18 C 0.042 3.958 19 C 0.100 3.900 20 C -0.139 4.139 21 C 0.050 3.950 22 O -0.408 6.408 23 C 0.045 3.955 24 O -0.368 6.368 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.055 0.945 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.389 0.611 33 H 0.279 0.721 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.274 -2.413 6.992 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.021 3.979 3 H 0.076 0.924 4 C -0.103 4.103 5 N -0.260 5.260 6 C -0.076 4.076 7 C 0.238 3.762 8 O -0.487 6.487 9 N -0.234 5.234 10 C -0.455 4.455 11 H 0.073 0.927 12 C -0.213 4.213 13 N -0.576 5.576 14 Si 0.784 3.216 15 H -0.181 1.181 16 H -0.201 1.201 17 H -0.155 1.155 18 C -0.087 4.087 19 C 0.059 3.941 20 C -0.177 4.177 21 C -0.025 4.025 22 O -0.328 6.328 23 C -0.032 4.032 24 O -0.288 6.288 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.224 0.776 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.563 -1.396 7.707 22.941 hybrid contribution 0.495 -1.206 -1.203 1.774 sum -21.068 -2.601 6.504 22.202 Atomic orbital electron populations 1.21712 0.89913 1.03607 1.03816 1.22462 0.96595 0.95292 0.83525 0.92405 1.22968 0.85696 1.01193 1.00432 1.61800 1.09448 1.53702 1.01065 1.21868 0.90709 0.99980 0.95052 1.20836 0.90176 0.82579 0.82622 1.90539 1.73627 1.42882 1.41607 1.42038 1.06473 1.46406 1.28458 1.18982 0.82228 1.30451 1.13879 0.92686 1.26099 0.95972 0.99094 1.00149 1.69804 1.07182 1.44979 1.35636 0.85374 0.79394 0.78377 0.78413 1.18123 1.20133 1.15499 1.22516 1.01153 0.95482 0.89520 1.22229 0.81996 0.94270 0.95600 1.23232 1.03445 0.98948 0.92061 1.23585 1.00607 0.83469 0.94865 1.88404 1.82633 1.43136 1.18642 1.23450 1.00011 0.97592 0.82122 1.87830 1.18871 1.78354 1.43724 0.91488 0.88710 0.91296 0.87364 0.92697 0.85560 0.90396 0.77561 0.91177 0.93223 0.90926 0.86800 0.89016 0.87856 0.90810 0.92216 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.57 71.98 0.69 -1.16 16 2 C 0.08 1.66 3.18 30.63 0.10 1.75 16 3 H 0.06 1.37 6.55 -2.39 -0.02 1.35 16 4 C 0.02 0.51 4.91 86.32 0.42 0.94 16 5 N -0.54 -15.91 4.30 -901.03 -3.87 -19.78 16 6 C 0.05 1.63 5.45 85.56 0.47 2.10 16 7 C 0.45 19.92 7.37 87.66 0.65 20.57 16 8 O -0.60 -32.74 14.24 -3.06 -0.04 -32.79 16 9 N -0.59 -27.45 5.09 -306.99 -1.56 -29.02 16 10 C -0.33 -18.96 10.16 84.04 0.85 -18.10 16 11 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 12 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 13 N -0.94 -56.33 13.96 21.66 0.30 -56.03 16 14 Si 0.96 38.36 27.74 68.60 1.90 40.26 16 15 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 16 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 18 C 0.04 1.30 3.83 86.01 0.33 1.63 16 19 C 0.10 2.79 0.81 -10.26 -0.01 2.78 16 20 C -0.14 -3.24 6.29 31.85 0.20 -3.04 16 21 C 0.05 1.19 7.78 72.69 0.57 1.75 16 22 O -0.41 -13.23 11.37 -148.98 -1.69 -14.92 16 23 C 0.04 1.48 6.86 72.22 0.50 1.98 16 24 O -0.37 -9.25 9.96 -148.97 -1.48 -10.73 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.11 1.81 8.08 -2.38 -0.02 1.79 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.13 3.00 8.03 -2.39 -0.02 2.98 16 31 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 32 H 0.39 14.86 5.76 -92.71 -0.53 14.33 16 33 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 2.88 5.97 -2.39 -0.01 2.86 16 36 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.09 2.19 8.00 -2.39 -0.02 2.17 16 38 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 2.40 7.68 -2.39 -0.02 2.38 16 41 H 0.07 2.24 6.32 -2.39 -0.02 2.22 16 Total: -1.00 -76.56 324.45 -0.79 -77.35 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.44 Total: 34.80 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 5.23 Total: 10.86 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -5.13 Total: -104.82 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -3.22 Total: -58.45 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.26 kcal Total: -76.56 -0.79 -77.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408349890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.929 kcal (2) G-P(sol) polarization free energy of solvation -76.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds