Wall clock time and date at job start Tue Mar 31 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.52304 * 2 1 4 4 C 1.53107 * 109.53072 * 239.86810 * 2 1 3 5 5 N 1.47022 * 109.37870 * 182.35426 * 4 2 1 6 6 C 1.46905 * 111.00094 * 183.09850 * 5 4 2 7 7 C 1.50695 * 109.47127 * 170.15288 * 6 5 4 8 8 O 1.21293 * 119.99975 * 353.82136 * 7 6 5 9 9 N 1.34778 * 119.99878 * 173.81730 * 7 6 5 10 10 C 1.37101 * 119.99913 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99784 * 359.97438 * 10 9 7 12 12 C 1.38949 * 119.99888 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99997 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99822 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47488 * 89.99615 * 14 12 10 16 16 H 1.48503 * 109.46948 * 209.99616 * 14 12 10 17 17 H 1.48507 * 109.47080 * 329.99637 * 14 12 10 18 18 C 1.47178 * 110.63399 * 59.40772 * 5 4 2 19 19 C 1.52099 * 109.41597 * 303.02920 * 18 5 4 20 20 C 1.54731 * 110.65221 * 290.26511 * 19 18 5 21 21 C 1.54536 * 102.20054 * 209.08909 * 20 19 18 22 22 O 1.43305 * 107.60353 * 20.66701 * 21 20 19 23 23 C 1.43804 * 110.01349 * 1.60388 * 22 21 20 24 24 O 1.41882 * 111.65593 * 54.12666 * 19 18 5 25 25 H 1.09006 * 109.46553 * 180.12816 * 1 2 3 26 26 H 1.08998 * 109.47657 * 300.12768 * 1 2 3 27 27 H 1.08995 * 109.47061 * 60.13601 * 1 2 3 28 28 H 1.09000 * 109.48387 * 62.38218 * 4 2 1 29 29 H 1.09003 * 109.48817 * 302.33018 * 4 2 1 30 30 H 1.09007 * 109.47110 * 290.15611 * 6 5 4 31 31 H 1.09006 * 109.46784 * 50.15163 * 6 5 4 32 32 H 0.96998 * 119.99923 * 0.02562 * 9 7 6 33 33 H 0.97001 * 119.99935 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.48047 * 183.05150 * 18 5 4 35 35 H 1.09000 * 109.48422 * 63.01380 * 18 5 4 36 36 H 1.09003 * 110.85045 * 90.91104 * 20 19 18 37 37 H 1.08994 * 110.85413 * 327.27233 * 20 19 18 38 38 H 1.09000 * 109.82803 * 261.15007 * 21 20 19 39 39 H 1.09001 * 109.82610 * 140.18963 * 21 20 19 40 40 H 1.09004 * 110.31554 * 95.35225 * 23 22 21 41 41 H 1.08997 * 110.31584 * 217.44453 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0418 -0.7244 -1.2480 5 7 3.5109 -0.7719 -1.2164 6 6 4.0439 -1.3956 -2.4350 7 6 5.5388 -1.2114 -2.4810 8 8 6.0911 -0.5245 -1.6478 9 7 6.2621 -1.8100 -3.4480 10 6 7.6222 -1.6428 -3.4896 11 1 8.1140 -1.0311 -2.7477 12 6 8.3678 -2.2595 -4.4868 13 7 7.7693 -3.0033 -5.3898 14 14 10.2210 -2.0323 -4.5430 15 1 10.8749 -3.0970 -3.7405 16 1 10.6876 -2.1162 -5.9504 17 1 10.5740 -0.7030 -3.9829 18 6 3.9812 -1.4778 -0.0136 19 6 3.4227 -0.7939 1.2249 20 6 4.0791 0.5928 1.4254 21 6 4.0156 0.7654 2.9597 22 8 3.8635 -0.5376 3.5365 23 6 3.8616 -1.5365 2.5021 24 8 2.0098 -0.6779 1.1666 25 1 -0.3633 -1.0278 0.0023 26 1 -0.3634 0.5158 0.8888 27 1 -0.3633 0.5117 -0.8912 28 1 1.7144 -0.1888 -2.1391 29 1 1.6454 -1.7396 -1.2674 30 1 3.8088 -2.4600 -2.4310 31 1 3.5929 -0.9272 -3.3099 32 1 5.8203 -2.3590 -4.1145 33 1 8.2897 -3.4335 -6.0862 34 1 5.0705 -1.4549 0.0187 35 1 3.6399 -2.5126 -0.0426 36 1 3.5038 1.3706 0.9231 37 1 5.1121 0.5871 1.0778 38 1 3.1628 1.3897 3.2266 39 1 4.9372 1.2235 3.3187 40 1 4.8617 -1.9508 2.3743 41 1 3.1524 -2.3286 2.7422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408349891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:55 Heat of formation + Delta-G solvation = -113.990820 kcal Electronic energy + Delta-G solvation = -23712.351059 eV Core-core repulsion = 20206.596263 eV Total energy + Delta-G solvation = -3505.754796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.66635 -38.50296 -37.69164 -35.32342 -33.86196 -33.14926 -31.31051 -30.72568 -29.45742 -27.74936 -26.27024 -24.82276 -22.82283 -22.42645 -21.80505 -19.39680 -19.21385 -17.90544 -17.19272 -16.42557 -16.04278 -15.86927 -15.32743 -14.88788 -14.70644 -14.53923 -14.28216 -14.03017 -13.66887 -13.52367 -13.31386 -12.89042 -12.52486 -12.47273 -12.15433 -11.76303 -11.73602 -11.57202 -11.52862 -11.23391 -11.16123 -10.92475 -10.84217 -10.42444 -10.31942 -10.24726 -9.56637 -9.50983 -9.44923 -8.50152 -8.04470 -7.96583 -6.45800 -3.86833 3.14809 3.24060 3.29532 3.45824 3.78025 3.85062 3.97617 4.17372 4.52335 4.80332 4.82810 4.92229 5.01328 5.08514 5.18281 5.22814 5.27795 5.34605 5.39667 5.46438 5.55215 5.59140 5.70565 5.74518 5.79900 5.83599 5.85257 5.95121 5.98848 6.14619 6.17543 6.20468 6.24948 6.98590 7.08796 7.15351 7.30087 7.51195 8.01638 8.56859 9.13700 9.49600 10.00810 10.71858 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.004282 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.699020 B = 6538.054483 C = 7375.772911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.089 3.911 3 H 0.069 0.931 4 C 0.021 3.979 5 N -0.509 5.509 6 C 0.045 3.955 7 C 0.442 3.558 8 O -0.577 6.577 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.037 3.963 19 C 0.092 3.908 20 C -0.164 4.164 21 C 0.054 3.946 22 O -0.382 6.382 23 C 0.069 3.931 24 O -0.364 6.364 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.392 0.608 33 H 0.272 0.728 34 H 0.113 0.887 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 3.207 8.792 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.031 3.969 3 H 0.087 0.913 4 C -0.107 4.107 5 N -0.234 5.234 6 C -0.086 4.086 7 C 0.228 3.772 8 O -0.462 6.462 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.091 4.091 19 C 0.052 3.948 20 C -0.202 4.202 21 C -0.022 4.022 22 O -0.302 6.302 23 C -0.008 4.008 24 O -0.284 6.284 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.225 0.775 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.162 3.942 9.558 15.963 hybrid contribution 0.509 -0.994 -1.245 1.672 sum -11.653 2.949 8.312 14.615 Atomic orbital electron populations 1.21728 0.92807 1.02880 1.02539 1.22201 0.94438 0.96043 0.84212 0.91307 1.22858 0.88656 0.99979 0.99252 1.61873 1.06582 1.53370 1.01529 1.21903 0.96055 0.97607 0.93011 1.19686 0.87583 0.85118 0.84839 1.90487 1.72002 1.42647 1.41029 1.41880 1.07704 1.44139 1.26239 1.19693 0.81778 1.28955 1.12474 0.87885 1.25261 1.00693 0.96349 0.95556 1.69610 1.36842 1.32062 1.15745 0.85862 0.82131 0.78978 0.77354 1.20394 1.20908 1.19388 1.22579 1.03411 0.94455 0.88640 1.22434 0.81636 0.95401 0.95351 1.23520 1.03700 0.97717 0.95254 1.23154 1.00840 0.85291 0.92951 1.88400 1.94926 1.15371 1.31468 1.23223 1.01123 0.91580 0.84876 1.87794 1.19779 1.78229 1.42548 0.91918 0.91651 0.90908 0.89691 0.94185 0.93414 0.89080 0.77506 0.91836 0.86929 0.94668 0.89600 0.88387 0.91647 0.91507 0.90257 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.57 37.15 0.36 -0.97 16 2 C 0.09 1.09 3.22 -26.68 -0.09 1.00 16 3 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 4 C 0.02 0.27 4.91 -3.70 -0.02 0.25 16 5 N -0.51 -8.29 4.31 -236.22 -1.02 -9.30 16 6 C 0.05 0.79 5.44 -4.98 -0.03 0.76 16 7 C 0.44 10.07 7.37 -10.99 -0.08 9.99 16 8 O -0.58 -14.84 14.24 5.55 0.08 -14.76 16 9 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 10 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 11 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 14 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 C 0.04 0.60 3.94 -4.13 -0.02 0.59 16 19 C 0.09 1.34 0.86 -89.58 -0.08 1.27 16 20 C -0.16 -2.35 5.94 -25.01 -0.15 -2.50 16 21 C 0.05 0.71 7.81 37.96 0.30 1.01 16 22 O -0.38 -5.70 11.36 -35.23 -0.40 -6.10 16 23 C 0.07 0.95 6.97 37.74 0.26 1.21 16 24 O -0.36 -5.20 9.99 -35.22 -0.35 -5.55 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.97 8.07 -51.93 -0.42 0.56 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 32 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.11 2.14 5.98 -51.93 -0.31 1.83 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.20 6.38 -51.93 -0.33 0.87 16 37 H 0.10 1.58 7.89 -51.93 -0.41 1.17 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.04 7.99 -51.93 -0.41 0.62 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -30.46 327.84 -7.17 -37.63 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.28 Total: 10.04 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 0.22 Total: 4.82 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.35 Total: -46.72 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.67 Total: -26.42 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.46 -7.17 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408349891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.366 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds