Wall clock time and date at job start Tue Mar 31 2020 03:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34636 * 116.99479 * 2 1 4 4 O 1.21515 * 120.00226 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00012 * 179.97438 * 3 2 1 6 6 C 1.46934 * 120.63005 * 0.02997 * 5 3 2 7 7 C 1.53186 * 108.77976 * 126.36275 * 6 5 3 8 8 C 1.53039 * 109.31077 * 54.63414 * 7 6 5 9 9 C 1.53048 * 109.54082 * 298.63592 * 8 7 6 10 10 H 1.09003 * 109.52125 * 301.39811 * 9 8 7 11 11 C 1.52993 * 109.49774 * 181.31894 * 9 8 7 12 12 H 1.08999 * 109.47163 * 300.16075 * 11 9 8 13 13 C 1.52997 * 109.47602 * 60.16224 * 11 9 8 14 14 N 1.46506 * 109.47100 * 180.15976 * 11 9 8 15 15 C 1.34773 * 119.99969 * 154.71955 * 14 11 9 16 16 O 1.21689 * 120.00158 * 0.02562 * 15 14 11 17 17 C 1.46376 * 120.00038 * 179.97438 * 15 14 11 18 18 H 1.08004 * 119.99999 * 0.02562 * 17 15 14 19 19 C 1.40047 * 120.00289 * 180.02562 * 17 15 14 20 20 N 1.30676 * 119.99832 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99995 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46850 * 90.00341 * 21 19 17 23 23 H 1.48504 * 109.47159 * 209.99994 * 21 19 17 24 24 H 1.48489 * 109.47333 * 330.00237 * 21 19 17 25 25 C 1.46924 * 120.63233 * 179.97438 * 5 3 2 26 26 H 1.09009 * 109.46943 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47397 * 299.99827 * 1 2 3 28 28 H 1.08998 * 109.47000 * 60.00858 * 1 2 3 29 29 H 1.08995 * 109.58049 * 246.15575 * 6 5 3 30 30 H 1.09000 * 109.58434 * 6.42772 * 6 5 3 31 31 H 1.08992 * 109.49918 * 174.58401 * 7 6 5 32 32 H 1.09000 * 109.50014 * 294.68718 * 7 6 5 33 33 H 1.08999 * 109.46252 * 178.61364 * 8 7 6 34 34 H 1.08998 * 109.46009 * 58.65522 * 8 7 6 35 35 H 1.09002 * 109.46832 * 299.99981 * 13 11 9 36 36 H 1.09001 * 109.47659 * 59.99432 * 13 11 9 37 37 H 1.08995 * 109.47574 * 180.02562 * 13 11 9 38 38 H 0.97005 * 119.99811 * 335.00008 * 14 11 9 39 39 H 0.97000 * 119.99487 * 179.97438 * 20 19 17 40 40 H 1.09009 * 109.58347 * 113.85076 * 25 5 3 41 41 H 1.08995 * 109.70623 * 353.49975 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4090 1.2703 0.0005 6 6 4.2229 0.0470 0.0004 7 6 5.2124 0.1131 -1.1671 8 6 6.0233 1.4074 -1.0706 9 6 5.0814 2.6099 -1.1670 10 1 4.5351 2.5700 -2.1094 11 6 5.8963 3.9032 -1.1035 12 1 6.4433 3.9421 -0.1616 13 6 6.8858 3.9404 -2.2698 14 7 4.9938 5.0539 -1.1920 15 6 5.3606 6.2398 -0.6673 16 8 6.4415 6.3550 -0.1204 17 6 4.4591 7.3897 -0.7562 18 1 3.4999 7.2876 -1.2420 19 6 4.8404 8.6222 -0.2114 20 7 6.0012 8.7459 0.3759 21 14 3.6897 10.0893 -0.3243 22 1 2.8049 10.1173 0.8680 23 1 4.4871 11.3409 -0.3783 24 1 2.8623 9.9762 -1.5521 25 6 4.0904 2.5721 0.0000 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 4.7705 -0.0275 0.9399 30 1 3.5757 -0.8224 -0.1151 31 1 5.8862 -0.7425 -1.1218 32 1 4.6649 0.0962 -2.1095 33 1 6.7452 1.4453 -1.8864 34 1 6.5510 1.4351 -0.1173 35 1 7.5573 3.0843 -2.2040 36 1 6.3389 3.9015 -3.2119 37 1 7.4667 4.8616 -2.2243 38 1 4.1306 4.9611 -1.6248 39 1 6.2654 9.5997 0.7529 40 1 4.6273 2.7038 0.9394 41 1 3.3576 3.3704 -0.1170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495511812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:59 Heat of formation + Delta-G solvation = -128.086182 kcal Electronic energy + Delta-G solvation = -23306.264121 eV Core-core repulsion = 19799.898105 eV Total energy + Delta-G solvation = -3506.366016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.66568 -38.85248 -37.18228 -36.21390 -34.68922 -32.64671 -32.22791 -30.63149 -29.10341 -27.68137 -26.15782 -25.14920 -23.62367 -22.04046 -20.68056 -19.75405 -19.31656 -18.08748 -17.08924 -17.00837 -16.49883 -15.35555 -15.04628 -14.81997 -14.63138 -14.28312 -14.10614 -13.91685 -13.41818 -13.12451 -12.97854 -12.70910 -12.68608 -12.26642 -12.12210 -11.70579 -11.42995 -11.25556 -11.13723 -11.00143 -10.87969 -10.82886 -10.71549 -10.46577 -10.39737 -10.36650 -10.17334 -10.03891 -8.80438 -8.72583 -7.55867 -7.45332 -6.13289 -4.57870 2.13275 2.83339 3.18699 3.25408 3.29012 3.84695 4.15341 4.59206 4.64603 4.75500 4.82595 4.99491 5.02719 5.05515 5.10373 5.28207 5.32553 5.42650 5.50440 5.64769 5.75141 5.76578 5.82531 5.90655 5.96967 6.00416 6.09466 6.20882 6.25091 6.31774 6.38865 6.48138 6.72696 6.89280 7.33301 7.49398 7.99313 8.17327 8.28573 8.39877 9.08736 9.59427 10.65494 10.84643 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.004577 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.170659 B = 6116.208030 C = 7400.339510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.375 6.375 3 C 0.645 3.355 4 O -0.567 6.567 5 N -0.592 5.592 6 C 0.111 3.889 7 C -0.133 4.133 8 C -0.116 4.116 9 C -0.106 4.106 10 H 0.074 0.926 11 C 0.160 3.840 12 H 0.077 0.923 13 C -0.157 4.157 14 N -0.763 5.763 15 C 0.557 3.443 16 O -0.581 6.581 17 C -0.545 4.545 18 H 0.067 0.933 19 C 0.089 3.911 20 N -0.769 5.769 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.265 1.265 25 C 0.133 3.867 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.380 0.620 39 H 0.267 0.733 40 H 0.074 0.926 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 -19.592 -2.562 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.289 6.289 3 C 0.399 3.601 4 O -0.455 6.455 5 N -0.332 5.332 6 C -0.012 4.012 7 C -0.171 4.171 8 C -0.154 4.154 9 C -0.126 4.126 10 H 0.093 0.907 11 C 0.053 3.947 12 H 0.095 0.905 13 C -0.216 4.216 14 N -0.418 5.418 15 C 0.361 3.639 16 O -0.464 6.464 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.131 4.131 20 N -0.398 5.398 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.189 1.189 25 C 0.013 3.987 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.211 0.789 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.581 -19.088 -2.041 19.735 hybrid contribution -1.135 0.693 -0.309 1.365 sum -5.715 -18.394 -2.349 19.404 Atomic orbital electron populations 1.23156 0.74760 1.03116 1.02800 1.86204 1.23909 1.31406 1.87372 1.18079 0.83315 0.82053 0.76674 1.91033 1.64097 1.34755 1.55633 1.47011 1.01682 1.08857 1.75637 1.21737 0.93860 0.86540 0.99050 1.21923 0.98053 0.98575 0.98595 1.21634 0.97741 0.93085 1.02967 1.21814 0.96420 0.95606 0.98730 0.90745 1.20416 0.90923 0.84401 0.98967 0.90463 1.22209 0.99321 1.01734 0.98362 1.46235 1.20033 1.10361 1.65165 1.18167 0.86994 0.81123 0.77595 1.90590 1.24551 1.83610 1.47630 1.20911 1.03613 0.93942 1.39728 0.91511 1.25683 0.94817 0.99459 0.93114 1.70025 1.18466 1.24549 1.26765 0.86408 0.80609 0.80610 0.79344 1.19765 1.20535 1.18947 1.21758 0.95565 0.82707 0.98714 0.88231 0.91911 0.91905 0.91193 0.89335 0.90577 0.91526 0.90808 0.91363 0.93070 0.93467 0.91841 0.78886 0.92233 0.90809 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -4.59 9.20 -40.31 -0.37 -4.96 16 3 C 0.64 9.80 8.43 54.06 0.46 10.26 16 4 O -0.57 -10.62 15.55 -19.28 -0.30 -10.92 16 5 N -0.59 -8.03 2.97 -178.58 -0.53 -8.56 16 6 C 0.11 1.10 6.45 -3.71 -0.02 1.08 16 7 C -0.13 -1.20 6.08 -26.62 -0.16 -1.36 16 8 C -0.12 -1.27 4.86 -26.69 -0.13 -1.40 16 9 C -0.11 -1.49 1.97 -90.52 -0.18 -1.67 16 10 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 11 C 0.16 2.91 2.16 -67.93 -0.15 2.76 16 12 H 0.08 1.59 7.57 -51.93 -0.39 1.20 16 13 C -0.16 -2.67 9.14 37.16 0.34 -2.33 16 14 N -0.76 -16.82 4.47 -55.22 -0.25 -17.06 16 15 C 0.56 15.73 7.71 -12.99 -0.10 15.63 16 16 O -0.58 -18.52 14.68 5.20 0.08 -18.44 16 17 C -0.54 -15.63 9.54 -35.63 -0.34 -15.97 16 18 H 0.07 1.79 7.85 -52.48 -0.41 1.37 16 19 C 0.09 2.51 5.50 -17.37 -0.10 2.42 16 20 N -0.77 -23.27 11.83 55.55 0.66 -22.61 16 21 Si 0.91 20.65 29.56 -169.99 -5.02 15.63 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C 0.13 2.04 5.47 -3.73 -0.02 2.02 16 26 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.79 6.92 -51.93 -0.36 0.43 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.77 6.36 -51.93 -0.33 0.43 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.71 6.41 -51.93 -0.33 0.38 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.38 7.73 8.39 -40.82 -0.34 7.38 16 39 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 40 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 41 H 0.10 1.89 6.51 -51.93 -0.34 1.55 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -35.92 335.30 -6.31 -42.23 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.29 Total: 6.62 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 0.67 Total: 13.03 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.12 Total: -48.24 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.59 Total: -34.32 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.92 -6.31 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495511812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.853 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds