Wall clock time and date at job start Tue Mar 31 2020 03:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34636 * 116.99479 * 2 1 4 4 O 1.21515 * 120.00226 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00012 * 179.97438 * 3 2 1 6 6 C 1.46934 * 120.63005 * 0.02997 * 5 3 2 7 7 C 1.53186 * 108.77976 * 126.36275 * 6 5 3 8 8 C 1.53039 * 109.31077 * 54.63414 * 7 6 5 9 9 C 1.53048 * 109.54082 * 298.63592 * 8 7 6 10 10 H 1.09003 * 109.52125 * 301.39811 * 9 8 7 11 11 C 1.52993 * 109.49774 * 181.31894 * 9 8 7 12 12 H 1.08999 * 109.47163 * 300.16075 * 11 9 8 13 13 C 1.52997 * 109.47602 * 60.16224 * 11 9 8 14 14 N 1.46506 * 109.47100 * 180.15976 * 11 9 8 15 15 C 1.34773 * 119.99969 * 154.71955 * 14 11 9 16 16 O 1.21689 * 120.00158 * 0.02562 * 15 14 11 17 17 C 1.46376 * 120.00038 * 179.97438 * 15 14 11 18 18 H 1.08004 * 119.99999 * 0.02562 * 17 15 14 19 19 C 1.40047 * 120.00289 * 180.02562 * 17 15 14 20 20 N 1.30676 * 119.99832 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99995 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46850 * 90.00341 * 21 19 17 23 23 H 1.48504 * 109.47159 * 209.99994 * 21 19 17 24 24 H 1.48489 * 109.47333 * 330.00237 * 21 19 17 25 25 C 1.46924 * 120.63233 * 179.97438 * 5 3 2 26 26 H 1.09009 * 109.46943 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47397 * 299.99827 * 1 2 3 28 28 H 1.08998 * 109.47000 * 60.00858 * 1 2 3 29 29 H 1.08995 * 109.58049 * 246.15575 * 6 5 3 30 30 H 1.09000 * 109.58434 * 6.42772 * 6 5 3 31 31 H 1.08992 * 109.49918 * 174.58401 * 7 6 5 32 32 H 1.09000 * 109.50014 * 294.68718 * 7 6 5 33 33 H 1.08999 * 109.46252 * 178.61364 * 8 7 6 34 34 H 1.08998 * 109.46009 * 58.65522 * 8 7 6 35 35 H 1.09002 * 109.46832 * 299.99981 * 13 11 9 36 36 H 1.09001 * 109.47659 * 59.99432 * 13 11 9 37 37 H 1.08995 * 109.47574 * 180.02562 * 13 11 9 38 38 H 0.97005 * 119.99811 * 335.00008 * 14 11 9 39 39 H 0.97000 * 119.99487 * 179.97438 * 20 19 17 40 40 H 1.09009 * 109.58347 * 113.85076 * 25 5 3 41 41 H 1.08995 * 109.70623 * 353.49975 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4090 1.2703 0.0005 6 6 4.2229 0.0470 0.0004 7 6 5.2124 0.1131 -1.1671 8 6 6.0233 1.4074 -1.0706 9 6 5.0814 2.6099 -1.1670 10 1 4.5351 2.5700 -2.1094 11 6 5.8963 3.9032 -1.1035 12 1 6.4433 3.9421 -0.1616 13 6 6.8858 3.9404 -2.2698 14 7 4.9938 5.0539 -1.1920 15 6 5.3606 6.2398 -0.6673 16 8 6.4415 6.3550 -0.1204 17 6 4.4591 7.3897 -0.7562 18 1 3.4999 7.2876 -1.2420 19 6 4.8404 8.6222 -0.2114 20 7 6.0012 8.7459 0.3759 21 14 3.6897 10.0893 -0.3243 22 1 2.8049 10.1173 0.8680 23 1 4.4871 11.3409 -0.3783 24 1 2.8623 9.9762 -1.5521 25 6 4.0904 2.5721 0.0000 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 4.7705 -0.0275 0.9399 30 1 3.5757 -0.8224 -0.1151 31 1 5.8862 -0.7425 -1.1218 32 1 4.6649 0.0962 -2.1095 33 1 6.7452 1.4453 -1.8864 34 1 6.5510 1.4351 -0.1173 35 1 7.5573 3.0843 -2.2040 36 1 6.3389 3.9015 -3.2119 37 1 7.4667 4.8616 -2.2243 38 1 4.1306 4.9611 -1.6248 39 1 6.2654 9.5997 0.7529 40 1 4.6273 2.7038 0.9394 41 1 3.3576 3.3704 -0.1170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495511812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:57 Heat of formation + Delta-G solvation = -154.559361 kcal Electronic energy + Delta-G solvation = -23307.412084 eV Core-core repulsion = 19799.898105 eV Total energy + Delta-G solvation = -3507.513979 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.77889 -40.19239 -38.89347 -37.37778 -36.27360 -34.59057 -33.68310 -32.06519 -30.52470 -28.58087 -28.18351 -26.21310 -24.87608 -23.21445 -22.07143 -21.16546 -20.86939 -19.30154 -18.88367 -18.12831 -17.59958 -17.41381 -16.56426 -16.11145 -15.81656 -15.65244 -15.13353 -15.08360 -14.81933 -14.53951 -14.32639 -14.11024 -13.96481 -13.80720 -13.33126 -13.07435 -12.91191 -12.75251 -12.62911 -12.55092 -12.48956 -12.05329 -12.02946 -11.82965 -11.81108 -11.64120 -11.47805 -11.33166 -10.92731 -9.83815 -9.79743 -9.40634 -8.27829 -6.83516 1.09507 1.38252 1.39725 1.54350 1.66428 2.24477 2.49358 2.91169 3.10633 3.63176 3.68270 3.83152 3.88189 4.07942 4.21307 4.34259 4.35866 4.36724 4.46931 4.57523 4.60375 4.65669 4.70537 4.82131 4.85938 4.87289 4.96671 5.06754 5.16573 5.21635 5.27547 5.32717 5.39879 5.45187 5.49220 5.90998 6.24542 6.24823 6.36561 6.88694 7.15785 7.56624 8.52248 8.69941 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.004577 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.170659 B = 6116.208030 C = 7400.339510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.366 6.366 3 C 0.640 3.360 4 O -0.612 6.612 5 N -0.588 5.588 6 C 0.104 3.896 7 C -0.123 4.123 8 C -0.114 4.114 9 C -0.088 4.088 10 H 0.079 0.921 11 C 0.157 3.843 12 H 0.048 0.952 13 C -0.148 4.148 14 N -0.752 5.752 15 C 0.544 3.456 16 O -0.627 6.627 17 C -0.578 4.578 18 H 0.079 0.921 19 C 0.032 3.968 20 N -0.820 5.820 21 Si 0.992 3.008 22 H -0.264 1.264 23 H -0.270 1.270 24 H -0.252 1.252 25 C 0.138 3.862 26 H 0.142 0.858 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.065 0.935 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 -21.711 -3.577 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.280 6.280 3 C 0.395 3.605 4 O -0.504 6.504 5 N -0.328 5.328 6 C -0.017 4.017 7 C -0.161 4.161 8 C -0.152 4.152 9 C -0.108 4.108 10 H 0.098 0.902 11 C 0.051 3.949 12 H 0.066 0.934 13 C -0.207 4.207 14 N -0.405 5.405 15 C 0.348 3.652 16 O -0.514 6.514 17 C -0.614 4.614 18 H 0.097 0.903 19 C -0.183 4.183 20 N -0.449 5.449 21 Si 0.812 3.188 22 H -0.189 1.189 23 H -0.194 1.194 24 H -0.176 1.176 25 C 0.016 3.984 26 H 0.160 0.840 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.221 0.779 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.456 -21.299 -3.085 22.202 hybrid contribution -0.886 1.230 0.025 1.516 sum -6.342 -20.069 -3.060 21.269 Atomic orbital electron populations 1.23499 0.73012 1.05694 1.02299 1.86219 1.25530 1.29373 1.86848 1.18309 0.83699 0.82300 0.76204 1.91000 1.65245 1.36463 1.57710 1.47056 1.01583 1.09309 1.74849 1.22070 0.94067 0.85184 1.00334 1.21895 0.97904 0.98345 0.97973 1.21659 0.97427 0.92351 1.03728 1.21648 0.96228 0.94743 0.98206 0.90248 1.20620 0.91072 0.84902 0.98297 0.93365 1.22109 0.99146 1.01219 0.98200 1.45938 1.20787 1.10063 1.63757 1.18425 0.86432 0.82880 0.77460 1.90542 1.26276 1.84868 1.49720 1.21440 1.04365 0.95085 1.40557 0.90275 1.26873 0.96586 1.02931 0.91908 1.70177 1.20959 1.25943 1.27869 0.85100 0.77958 0.75814 0.79922 1.18864 1.19432 1.17577 1.21495 0.94909 0.83114 0.98913 0.84018 0.92571 0.92381 0.89971 0.87706 0.87203 0.91448 0.89344 0.91184 0.89256 0.91986 0.96060 0.77870 0.91638 0.91709 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.81 10.56 113.37 1.20 2.01 16 2 O -0.37 -8.34 9.20 -55.46 -0.51 -8.85 16 3 C 0.64 19.18 8.43 129.79 1.09 20.28 16 4 O -0.61 -23.52 15.55 19.79 0.31 -23.22 16 5 N -0.59 -15.39 2.97 -949.32 -2.82 -18.22 16 6 C 0.10 1.76 6.45 86.36 0.56 2.32 16 7 C -0.12 -1.72 6.08 30.67 0.19 -1.54 16 8 C -0.11 -2.17 4.86 30.62 0.15 -2.02 16 9 C -0.09 -2.42 1.97 -10.73 -0.02 -2.44 16 10 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 11 C 0.16 5.82 2.16 44.99 0.10 5.91 16 12 H 0.05 2.08 7.57 -2.39 -0.02 2.06 16 13 C -0.15 -4.96 9.14 71.98 0.66 -4.30 16 14 N -0.75 -34.42 4.47 -446.83 -2.00 -36.42 16 15 C 0.54 32.15 7.71 86.36 0.67 32.81 16 16 O -0.63 -42.13 14.68 -4.31 -0.06 -42.19 16 17 C -0.58 -34.09 9.54 24.83 0.24 -33.86 16 18 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 19 C 0.03 1.85 5.50 85.30 0.47 2.32 16 20 N -0.82 -51.26 11.83 21.84 0.26 -51.00 16 21 Si 0.99 42.82 29.56 68.60 2.03 44.85 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 25 C 0.14 4.28 5.47 86.35 0.47 4.76 16 26 H 0.14 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.48 6.92 -2.39 -0.02 1.47 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.48 6.36 -2.39 -0.02 1.46 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 2.28 6.41 -2.39 -0.02 2.27 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.39 16.33 8.39 -92.70 -0.78 15.55 16 39 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 40 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.07 2.63 6.51 -2.39 -0.02 2.62 16 Total: -1.00 -83.32 335.30 3.22 -80.10 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.26 Total: 28.69 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 5.76 Total: 26.25 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -4.56 Total: -105.63 kcal Atomic # 8 Polarization: -73.99 SS G_CDS: -0.27 Total: -74.26 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -83.32 3.22 -80.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495511812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.460 kcal (2) G-P(sol) polarization free energy of solvation -83.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds