Wall clock time and date at job start Tue Mar 31 2020 03:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 116.99789 * 2 1 4 4 O 1.20829 * 120.00203 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99824 * 179.72585 * 3 2 1 6 6 H 1.09005 * 110.85639 * 297.65866 * 5 3 2 7 7 C 1.54629 * 110.97330 * 61.45035 * 5 3 2 8 8 C 1.51277 * 104.19404 * 142.91703 * 7 5 3 9 9 O 1.21281 * 124.93592 * 163.71184 * 8 7 5 10 10 N 1.34416 * 110.12184 * 343.74599 * 8 7 5 11 11 C 1.46499 * 124.35200 * 179.56909 * 10 8 7 12 12 N 1.46901 * 109.46892 * 89.97901 * 11 10 8 13 13 C 1.46895 * 110.99844 * 278.69029 * 12 11 10 14 14 C 1.46894 * 110.99889 * 154.73417 * 12 11 10 15 15 H 1.08997 * 109.47574 * 171.49788 * 14 12 11 16 16 C 1.53006 * 109.47090 * 51.49934 * 14 12 11 17 17 C 1.50699 * 109.47534 * 291.50261 * 14 12 11 18 18 H 1.08003 * 119.99788 * 359.97438 * 17 14 12 19 19 C 1.37879 * 120.00309 * 180.02562 * 17 14 12 20 20 N 1.31505 * 120.00007 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47704 * 59.99562 * 21 19 17 23 23 H 1.48506 * 109.46661 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46993 * 299.99084 * 21 19 17 25 25 C 1.46764 * 111.29831 * 359.59446 * 10 8 7 26 26 H 1.09000 * 109.46737 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46886 * 300.00580 * 1 2 3 28 28 H 1.09003 * 109.46577 * 60.00203 * 1 2 3 29 29 H 1.09002 * 110.48333 * 261.60081 * 7 5 3 30 30 H 1.09000 * 110.48052 * 24.23809 * 7 5 3 31 31 H 1.09000 * 109.46979 * 209.98107 * 11 10 8 32 32 H 1.08997 * 109.47040 * 329.97951 * 11 10 8 33 33 H 1.08991 * 109.47460 * 60.00001 * 13 12 11 34 34 H 1.09000 * 109.47264 * 180.02562 * 13 12 11 35 35 H 1.09006 * 109.47243 * 299.99843 * 13 12 11 36 36 H 1.09003 * 109.46954 * 53.73875 * 16 14 12 37 37 H 1.09001 * 109.46930 * 173.73925 * 16 14 12 38 38 H 1.09000 * 109.47222 * 293.73919 * 16 14 12 39 39 H 0.97003 * 120.00530 * 179.97438 * 20 19 17 40 40 H 1.08997 * 110.24759 * 258.01682 * 25 10 8 41 41 H 1.09003 * 110.24804 * 136.00990 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0062 6 1 3.9748 0.8250 0.9112 7 6 4.1605 0.6120 -1.2581 8 6 5.3432 1.4856 -1.6140 9 8 6.2405 1.1675 -2.3652 10 7 5.2551 2.6654 -0.9759 11 6 6.2416 3.7425 -1.0899 12 7 5.8716 4.6298 -2.2005 13 6 6.3043 4.0702 -3.4880 14 6 6.4193 5.9783 -2.0019 15 1 6.2614 6.5711 -2.9029 16 6 7.9183 5.8822 -1.7109 17 6 5.7232 6.6370 -0.8389 18 1 4.9508 6.1070 -0.3013 19 6 6.0716 7.9166 -0.4617 20 7 7.0117 8.5621 -1.1165 21 14 5.2092 8.7327 0.9804 22 1 5.4254 7.9254 2.2079 23 1 5.7628 10.0960 1.1812 24 1 3.7540 8.8254 0.6989 25 6 4.0440 2.7357 -0.1499 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 4.4891 -0.4037 -1.0377 30 1 3.4301 0.6106 -2.0671 31 1 6.2655 4.3130 -0.1614 32 1 7.2262 3.3148 -1.2789 33 1 5.8289 3.1016 -3.6413 34 1 6.0183 4.7472 -4.2929 35 1 7.3874 3.9470 -3.4850 36 1 8.4054 5.3082 -2.4993 37 1 8.3462 6.8840 -1.6737 38 1 8.0714 5.3859 -0.7526 39 1 7.2566 9.4626 -0.8515 40 1 3.2802 3.3308 -0.6503 41 1 4.2770 3.1626 0.8256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782271105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:04 Heat of formation + Delta-G solvation = -122.005877 kcal Electronic energy + Delta-G solvation = -23428.983037 eV Core-core repulsion = 19922.880682 eV Total energy + Delta-G solvation = -3506.102355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.08552 -40.93082 -38.75278 -37.81824 -37.08705 -34.86797 -33.30319 -30.68631 -29.17445 -28.50458 -27.74693 -27.20110 -25.32090 -24.21435 -21.69319 -21.47667 -20.28672 -18.92445 -18.42836 -17.99865 -17.85789 -17.15117 -17.07893 -16.60302 -16.22753 -15.60924 -15.40610 -15.08398 -14.90012 -14.51791 -14.31996 -14.05341 -13.85801 -13.80436 -13.69044 -13.23357 -13.05029 -12.83511 -12.70656 -12.60200 -12.42973 -12.36776 -12.32048 -12.14679 -11.84789 -11.77685 -11.61317 -11.01245 -10.87907 -10.50991 -9.85806 -9.02713 -8.10410 -6.21564 1.08387 1.45355 1.47207 1.48940 1.54352 1.57304 2.08967 2.44224 3.13538 3.19467 3.29111 3.42176 3.76789 3.84783 4.11385 4.22845 4.36529 4.37419 4.38964 4.47859 4.56726 4.61729 4.65803 4.74732 4.77264 4.80021 4.85200 4.92324 4.97117 5.05164 5.33012 5.35264 5.47459 5.64466 5.78002 6.10492 6.21269 6.39623 6.61817 6.66394 6.89279 7.12637 7.48051 8.96122 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.005052 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.285899 B = 5540.597896 C = 6856.486600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.480 3.520 4 O -0.530 6.530 5 C -0.081 4.081 6 H 0.168 0.832 7 C -0.125 4.125 8 C 0.508 3.492 9 O -0.571 6.571 10 N -0.603 5.603 11 C 0.304 3.696 12 N -0.558 5.558 13 C 0.039 3.961 14 C 0.221 3.779 15 H 0.008 0.992 16 C -0.155 4.155 17 C -0.515 4.515 18 H 0.060 0.940 19 C 0.016 3.984 20 N -0.920 5.920 21 Si 0.958 3.042 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.115 3.885 26 H 0.134 0.866 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.144 0.856 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.022 0.978 37 H 0.062 0.938 38 H 0.035 0.965 39 H 0.262 0.738 40 H 0.069 0.931 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.783 -18.565 4.990 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.323 3.677 4 O -0.419 6.419 5 C -0.100 4.100 6 H 0.185 0.815 7 C -0.165 4.165 8 C 0.297 3.703 9 O -0.451 6.451 10 N -0.336 5.336 11 C 0.093 3.907 12 N -0.283 5.283 13 C -0.109 4.109 14 C 0.114 3.886 15 H 0.026 0.974 16 C -0.214 4.214 17 C -0.553 4.553 18 H 0.078 0.922 19 C -0.183 4.183 20 N -0.560 5.560 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.008 4.008 26 H 0.153 0.847 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.162 0.838 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.920 -18.159 4.592 21.195 hybrid contribution 0.412 1.171 0.288 1.275 sum -9.507 -16.988 4.880 20.070 Atomic orbital electron populations 1.23587 0.74628 1.05840 1.02538 1.86491 1.24935 1.31857 1.83482 1.23312 0.91456 0.81468 0.71474 1.90738 1.67561 1.37517 1.46087 1.21915 0.87638 0.97059 1.03400 0.81490 1.22285 0.95513 1.01221 0.97433 1.21419 0.87180 0.83019 0.78697 1.90693 1.39268 1.77185 1.37952 1.48577 1.24134 1.14882 1.46012 1.21592 0.87800 0.85252 0.96102 1.61967 1.60768 1.03730 1.01851 1.22229 0.97460 0.99183 0.92034 1.19062 0.90126 0.83569 0.95837 0.97412 1.22228 0.99769 1.01546 0.97873 1.21262 1.19864 0.99666 1.14524 0.92201 1.25652 0.95696 0.97671 0.99265 1.70012 1.31308 1.12759 1.41875 0.85616 0.78617 0.77455 0.79959 1.19105 1.21276 1.20195 1.22004 0.86422 0.95500 0.96830 0.84745 0.91828 0.92271 0.83759 0.86917 0.88627 0.93688 0.92296 0.92528 0.96504 0.95949 0.91877 0.94563 0.92927 0.91314 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.62 10.55 -51.38 -0.54 -6.16 16 3 C 0.48 9.70 7.18 71.24 0.51 10.21 16 4 O -0.53 -14.81 15.32 21.95 0.34 -14.47 16 5 C -0.08 -1.41 3.66 -10.48 -0.04 -1.45 16 6 H 0.17 1.73 8.14 -2.38 -0.02 1.71 16 7 C -0.12 -2.33 6.40 30.59 0.20 -2.13 16 8 C 0.51 15.28 7.32 87.90 0.64 15.92 16 9 O -0.57 -21.46 16.27 -3.03 -0.05 -21.51 16 10 N -0.60 -19.19 3.15 -829.04 -2.61 -21.80 16 11 C 0.30 11.79 4.23 170.81 0.72 12.51 16 12 N -0.56 -24.55 4.78 -913.87 -4.37 -28.91 16 13 C 0.04 1.61 9.06 127.69 1.16 2.77 16 14 C 0.22 11.17 2.28 44.17 0.10 11.27 16 15 H 0.01 0.45 7.97 -2.39 -0.02 0.43 16 16 C -0.15 -7.45 8.15 71.98 0.59 -6.87 16 17 C -0.51 -27.44 7.67 25.60 0.20 -27.25 16 18 H 0.06 3.15 7.56 -2.91 -0.02 3.13 16 19 C 0.02 0.87 5.30 84.66 0.45 1.32 16 20 N -0.92 -52.05 11.39 21.45 0.24 -51.81 16 21 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 25 C 0.12 3.01 6.66 86.83 0.58 3.59 16 26 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 28 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 29 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.11 2.03 7.89 -2.39 -0.02 2.01 16 31 H 0.10 3.86 6.44 -2.39 -0.02 3.85 16 32 H 0.05 1.81 7.41 -2.39 -0.02 1.80 16 33 H 0.06 2.35 6.14 -2.39 -0.01 2.33 16 34 H 0.06 2.26 8.03 -2.39 -0.02 2.24 16 35 H 0.02 0.68 6.68 -2.38 -0.02 0.66 16 36 H 0.02 0.98 6.65 -2.39 -0.02 0.96 16 37 H 0.06 3.35 6.27 -2.39 -0.01 3.33 16 38 H 0.04 1.65 7.00 -2.39 -0.02 1.64 16 39 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.07 2.18 7.07 -2.39 -0.02 2.16 16 41 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -69.02 333.03 2.36 -66.66 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.03 Total: 11.86 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 6.30 Total: 21.41 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -6.74 Total: -102.53 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.26 Total: -42.14 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -69.02 2.36 -66.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782271105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.346 kcal (2) G-P(sol) polarization free energy of solvation -69.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds