Wall clock time and date at job start Tue Mar 31 2020 03:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 117.00147 * 2 1 4 4 O 1.20823 * 119.99704 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99846 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.29023 * 60.67488 * 5 3 2 7 7 C 1.54258 * 110.32161 * 298.54398 * 5 3 2 8 8 C 1.54387 * 105.05996 * 241.00169 * 7 5 3 9 9 N 1.48559 * 104.59456 * 336.15308 * 8 7 5 10 10 C 1.46901 * 110.99806 * 159.03536 * 9 8 7 11 11 C 1.50705 * 109.46746 * 69.87617 * 10 9 8 12 12 O 1.21274 * 120.00399 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99721 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00157 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47109 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00496 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99572 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 C 1.48561 * 104.22104 * 39.48099 * 9 8 7 24 24 H 1.08993 * 110.41287 * 79.29650 * 23 9 8 25 25 C 1.53005 * 110.40825 * 201.73875 * 23 9 8 26 26 H 1.08999 * 109.46907 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47070 * 299.99688 * 1 2 3 28 28 H 1.09003 * 109.47182 * 60.00139 * 1 2 3 29 29 H 1.09005 * 110.32080 * 122.11281 * 7 5 3 30 30 H 1.08995 * 110.41462 * 359.94903 * 7 5 3 31 31 H 1.08994 * 110.41410 * 217.37034 * 8 7 5 32 32 H 1.09005 * 110.40352 * 94.92842 * 8 7 5 33 33 H 1.08992 * 109.47407 * 309.87307 * 10 9 8 34 34 H 1.09001 * 109.46874 * 189.87325 * 10 9 8 35 35 H 0.97003 * 119.99860 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47129 * 59.99342 * 14 13 11 37 37 H 1.08998 * 109.46845 * 300.00149 * 14 13 11 38 38 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 39 39 H 1.08994 * 109.47070 * 58.54501 * 25 23 9 40 40 H 1.09001 * 109.47083 * 178.54550 * 25 23 9 41 41 H 1.09003 * 109.46925 * 298.54081 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9697 0.7947 -0.8921 7 6 4.1380 0.6123 1.2698 8 6 4.8975 1.7390 2.0027 9 7 5.2356 2.7173 0.9371 10 6 5.5065 4.0438 1.5070 11 6 6.8054 4.0068 2.2704 12 8 7.4423 2.9767 2.3338 13 7 7.2586 5.1182 2.8834 14 6 8.5210 5.0822 3.6260 15 6 8.7990 6.4430 4.2105 16 1 8.1051 7.2538 4.0451 17 6 9.9393 6.6529 4.9566 18 7 10.7846 5.6657 5.1576 19 14 10.2836 8.3396 5.6818 20 1 9.1795 8.7186 6.5998 21 1 10.3822 9.3384 4.5872 22 1 11.5627 8.3027 6.4354 23 6 4.0284 2.7461 0.0717 24 1 3.2531 3.3663 0.5213 25 6 4.3844 3.2627 -1.3237 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.8220 -0.1930 1.0017 30 1 3.3313 0.2304 1.8953 31 1 5.8054 1.3488 2.4626 32 1 4.2581 2.2017 2.7546 33 1 4.6966 4.3220 2.1812 34 1 5.5782 4.7768 0.7034 35 1 6.7490 5.9420 2.8330 36 1 9.3312 4.8041 2.9520 37 1 8.4491 4.3490 4.4294 38 1 10.6057 4.7897 4.7814 39 1 5.1477 2.6217 -1.7647 40 1 3.4942 3.2532 -1.9527 41 1 4.7647 4.2814 -1.2479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787324084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:10 Heat of formation + Delta-G solvation = -123.716503 kcal Electronic energy + Delta-G solvation = -22552.215855 eV Core-core repulsion = 19046.039322 eV Total energy + Delta-G solvation = -3506.176533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12409 -39.50075 -38.14657 -36.69389 -34.40596 -32.83288 -32.34994 -31.52860 -28.75031 -27.52763 -26.25268 -25.28326 -22.68362 -22.52660 -21.21127 -20.10048 -19.71137 -17.93873 -17.49192 -17.13962 -16.65370 -16.16751 -15.47638 -15.34849 -14.93003 -14.51900 -14.23679 -13.77674 -13.70542 -13.60739 -13.47146 -12.94405 -12.72850 -12.43321 -12.32864 -12.04667 -11.99648 -11.80074 -11.56313 -11.32779 -11.17552 -11.15748 -11.01557 -10.93559 -10.77449 -10.55359 -10.16351 -9.20156 -8.79444 -8.68542 -8.47631 -7.98695 -6.51878 -4.25416 1.86587 2.31189 3.29157 3.37377 3.39331 3.58008 3.62736 4.02705 4.24625 4.41515 4.48208 4.53855 4.73390 4.80728 4.85743 5.01549 5.12244 5.16993 5.24162 5.26592 5.29045 5.31133 5.48059 5.52731 5.57152 5.67063 5.78486 5.88297 6.01425 6.05056 6.14933 6.74981 6.80595 7.01982 7.22429 7.33065 7.40081 7.66250 8.26641 8.47269 8.71465 9.00404 9.48384 10.88301 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.040360 B = 0.002833 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.597242 B = 9880.371896 C =10012.208736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.505 6.505 5 C -0.084 4.084 6 H 0.122 0.878 7 C -0.110 4.110 8 C 0.031 3.969 9 N -0.483 5.483 10 C 0.025 3.975 11 C 0.501 3.499 12 O -0.540 6.540 13 N -0.711 5.711 14 C 0.242 3.758 15 C -0.623 4.623 16 H 0.057 0.943 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 1.076 2.924 20 H -0.287 1.287 21 H -0.286 1.286 22 H -0.280 1.280 23 C 0.067 3.933 24 H 0.072 0.928 25 C -0.137 4.137 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.392 0.608 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.273 0.727 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.918 -9.236 -11.545 24.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.312 3.688 4 O -0.392 6.392 5 C -0.104 4.104 6 H 0.140 0.860 7 C -0.149 4.149 8 C -0.096 4.096 9 N -0.207 5.207 10 C -0.107 4.107 11 C 0.285 3.715 12 O -0.417 6.417 13 N -0.360 5.360 14 C 0.121 3.879 15 C -0.662 4.662 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.536 5.536 19 Si 0.903 3.097 20 H -0.213 1.213 21 H -0.213 1.213 22 H -0.206 1.206 23 C -0.041 4.041 24 H 0.090 0.910 25 C -0.194 4.194 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.224 0.776 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.082 -8.976 -10.857 22.921 hybrid contribution -2.396 -0.072 -0.516 2.452 sum -20.477 -9.048 -11.373 25.110 Atomic orbital electron populations 1.23287 0.76290 1.03769 1.02597 1.86520 1.23429 1.33336 1.84032 1.23704 0.91945 0.81315 0.71860 1.90663 1.67075 1.36334 1.45171 1.21858 0.86591 0.98970 1.02934 0.86034 1.22306 0.99865 0.98707 0.93973 1.23259 1.00502 0.92664 0.93202 1.65178 1.32972 1.06069 1.16470 1.22206 0.96575 0.92605 0.99286 1.20258 0.86760 0.84448 0.80027 1.90632 1.58679 1.31095 1.61312 1.46265 1.25807 1.11498 1.52417 1.19136 0.80334 0.97861 0.90594 1.22066 1.10737 0.95623 1.37741 0.92515 1.25880 0.92338 1.05239 0.94910 1.70761 1.37055 1.02994 1.42824 0.83451 0.76443 0.73523 0.76305 1.21313 1.21267 1.20554 1.22632 0.92083 0.93241 0.96149 0.91012 1.21727 1.01534 1.01852 0.94297 0.87991 0.91873 0.91856 0.89159 0.90700 0.87646 0.93982 0.92040 0.88021 0.77552 0.96536 0.96651 0.91689 0.91378 0.92226 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.37 10.52 -39.27 -0.41 -3.79 16 3 C 0.47 5.10 7.05 36.01 0.25 5.35 16 4 O -0.51 -6.68 15.22 -18.75 -0.29 -6.97 16 5 C -0.08 -0.85 3.11 -90.39 -0.28 -1.13 16 6 H 0.12 1.04 7.84 -51.93 -0.41 0.64 16 7 C -0.11 -1.14 6.61 -25.35 -0.17 -1.31 16 8 C 0.03 0.42 5.80 -2.18 -0.01 0.41 16 9 N -0.48 -6.78 4.74 -223.56 -1.06 -7.84 16 10 C 0.02 0.36 5.24 -4.97 -0.03 0.34 16 11 C 0.50 9.92 7.63 -10.98 -0.08 9.84 16 12 O -0.54 -12.66 14.84 5.56 0.08 -12.57 16 13 N -0.71 -15.03 5.55 -61.47 -0.34 -15.38 16 14 C 0.24 6.40 4.74 -5.20 -0.02 6.38 16 15 C -0.62 -17.19 9.28 -34.44 -0.32 -17.51 16 16 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 18 N -0.90 -27.39 13.65 55.43 0.76 -26.63 16 19 Si 1.08 24.45 29.90 -169.99 -5.08 19.37 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.07 0.78 2.21 -66.07 -0.15 0.63 16 24 H 0.07 0.90 6.80 -51.93 -0.35 0.55 16 25 C -0.14 -1.39 9.34 37.16 0.35 -1.04 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.70 7.69 -51.93 -0.40 0.30 16 31 H 0.11 1.67 6.91 -51.93 -0.36 1.31 16 32 H 0.04 0.55 7.82 -51.93 -0.41 0.15 16 33 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 34 H 0.10 1.30 7.28 -51.93 -0.38 0.92 16 35 H 0.39 7.18 8.32 -40.82 -0.34 6.84 16 36 H 0.02 0.48 8.01 -51.93 -0.42 0.07 16 37 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 38 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 39 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.63 7.36 -51.93 -0.38 0.25 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -34.08 340.31 -6.99 -41.08 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.29 Total: 3.82 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 0.51 Total: 3.78 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.64 Total: -49.85 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.62 Total: -23.33 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.08 -6.99 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787324084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.639 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds