Wall clock time and date at job start Tue Mar 31 2020 03:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 117.00147 * 2 1 4 4 O 1.20823 * 119.99704 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99846 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.29023 * 60.67488 * 5 3 2 7 7 C 1.54258 * 110.32161 * 298.54398 * 5 3 2 8 8 C 1.54387 * 105.05996 * 241.00169 * 7 5 3 9 9 N 1.48559 * 104.59456 * 336.15308 * 8 7 5 10 10 C 1.46901 * 110.99806 * 159.03536 * 9 8 7 11 11 C 1.50705 * 109.46746 * 69.87617 * 10 9 8 12 12 O 1.21274 * 120.00399 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99721 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00157 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47109 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00496 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99572 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 C 1.48561 * 104.22104 * 39.48099 * 9 8 7 24 24 H 1.08993 * 110.41287 * 79.29650 * 23 9 8 25 25 C 1.53005 * 110.40825 * 201.73875 * 23 9 8 26 26 H 1.08999 * 109.46907 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47070 * 299.99688 * 1 2 3 28 28 H 1.09003 * 109.47182 * 60.00139 * 1 2 3 29 29 H 1.09005 * 110.32080 * 122.11281 * 7 5 3 30 30 H 1.08995 * 110.41462 * 359.94903 * 7 5 3 31 31 H 1.08994 * 110.41410 * 217.37034 * 8 7 5 32 32 H 1.09005 * 110.40352 * 94.92842 * 8 7 5 33 33 H 1.08992 * 109.47407 * 309.87307 * 10 9 8 34 34 H 1.09001 * 109.46874 * 189.87325 * 10 9 8 35 35 H 0.97003 * 119.99860 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47129 * 59.99342 * 14 13 11 37 37 H 1.08998 * 109.46845 * 300.00149 * 14 13 11 38 38 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 39 39 H 1.08994 * 109.47070 * 58.54501 * 25 23 9 40 40 H 1.09001 * 109.47083 * 178.54550 * 25 23 9 41 41 H 1.09003 * 109.46925 * 298.54081 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9697 0.7947 -0.8921 7 6 4.1380 0.6123 1.2698 8 6 4.8975 1.7390 2.0027 9 7 5.2356 2.7173 0.9371 10 6 5.5065 4.0438 1.5070 11 6 6.8054 4.0068 2.2704 12 8 7.4423 2.9767 2.3338 13 7 7.2586 5.1182 2.8834 14 6 8.5210 5.0822 3.6260 15 6 8.7990 6.4430 4.2105 16 1 8.1051 7.2538 4.0451 17 6 9.9393 6.6529 4.9566 18 7 10.7846 5.6657 5.1576 19 14 10.2836 8.3396 5.6818 20 1 9.1795 8.7186 6.5998 21 1 10.3822 9.3384 4.5872 22 1 11.5627 8.3027 6.4354 23 6 4.0284 2.7461 0.0717 24 1 3.2531 3.3663 0.5213 25 6 4.3844 3.2627 -1.3237 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.8220 -0.1930 1.0017 30 1 3.3313 0.2304 1.8953 31 1 5.8054 1.3488 2.4626 32 1 4.2581 2.2017 2.7546 33 1 4.6966 4.3220 2.1812 34 1 5.5782 4.7768 0.7034 35 1 6.7490 5.9420 2.8330 36 1 9.3312 4.8041 2.9520 37 1 8.4491 4.3490 4.4294 38 1 10.6057 4.7897 4.7814 39 1 5.1477 2.6217 -1.7647 40 1 3.4942 3.2532 -1.9527 41 1 4.7647 4.2814 -1.2479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787324084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:10 Heat of formation + Delta-G solvation = -149.114118 kcal Electronic energy + Delta-G solvation = -22553.317178 eV Core-core repulsion = 19046.039322 eV Total energy + Delta-G solvation = -3507.277856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.98189 -40.82708 -39.42317 -37.52587 -36.39487 -34.47570 -33.79190 -32.41865 -29.89347 -28.81827 -27.39027 -26.54844 -24.66432 -23.41631 -22.29561 -21.34896 -20.96089 -19.44692 -18.64282 -18.11224 -17.76694 -17.49088 -16.77504 -16.60502 -16.19371 -15.77328 -15.62913 -15.40890 -14.80349 -14.64727 -14.50265 -14.30731 -14.17171 -14.03326 -13.57130 -13.12574 -13.09928 -12.88344 -12.80094 -12.54798 -12.52727 -12.29541 -12.16194 -11.91800 -11.85506 -11.78660 -11.41654 -11.00702 -10.76544 -10.75754 -9.96014 -9.57919 -8.79970 -6.55453 1.04725 1.55470 1.58176 1.63855 1.68856 1.83272 2.24521 2.56485 2.96712 3.07789 3.24173 3.50221 3.75107 3.86462 4.05946 4.11974 4.17125 4.22526 4.28268 4.30966 4.31708 4.39092 4.61097 4.69458 4.71769 4.79183 4.81513 4.94038 4.96248 5.02540 5.04603 5.25775 5.32410 5.45289 5.53538 5.71080 5.80923 6.08363 6.31446 6.61568 6.81365 7.24323 7.42309 8.59431 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.040360 B = 0.002833 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.597242 B = 9880.371896 C =10012.208736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.475 3.525 4 O -0.532 6.532 5 C -0.080 4.080 6 H 0.141 0.859 7 C -0.101 4.101 8 C 0.028 3.972 9 N -0.499 5.499 10 C 0.038 3.962 11 C 0.499 3.501 12 O -0.580 6.580 13 N -0.707 5.707 14 C 0.256 3.744 15 C -0.630 4.630 16 H 0.076 0.924 17 C -0.033 4.033 18 N -0.930 5.930 19 Si 1.129 2.871 20 H -0.264 1.264 21 H -0.263 1.263 22 H -0.286 1.286 23 C 0.070 3.930 24 H 0.065 0.935 25 C -0.134 4.134 26 H 0.132 0.868 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.408 0.592 36 H -0.017 1.017 37 H -0.017 1.017 38 H 0.254 0.746 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.986 -8.298 -12.521 26.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.318 3.682 4 O -0.421 6.421 5 C -0.100 4.100 6 H 0.159 0.841 7 C -0.139 4.139 8 C -0.100 4.100 9 N -0.224 5.224 10 C -0.093 4.093 11 C 0.285 3.715 12 O -0.460 6.460 13 N -0.358 5.358 14 C 0.133 3.867 15 C -0.668 4.668 16 H 0.094 0.906 17 C -0.232 4.232 18 N -0.566 5.566 19 Si 0.949 3.051 20 H -0.189 1.189 21 H -0.188 1.188 22 H -0.212 1.212 23 C -0.038 4.038 24 H 0.083 0.917 25 C -0.191 4.191 26 H 0.150 0.850 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.244 0.756 36 H 0.001 0.999 37 H 0.000 1.000 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.212 -8.051 -11.869 24.783 hybrid contribution -1.816 -0.471 -0.247 1.892 sum -22.028 -8.523 -12.115 26.545 Atomic orbital electron populations 1.23576 0.74668 1.05799 1.02562 1.86510 1.25017 1.32436 1.83515 1.23722 0.92020 0.81316 0.71103 1.90655 1.67655 1.37236 1.46598 1.21855 0.86463 0.98130 1.03527 0.84109 1.22246 0.99999 0.97764 0.93928 1.23198 0.99434 0.93759 0.93572 1.65140 1.34716 1.05661 1.16890 1.22116 0.93528 0.93937 0.99749 1.21221 0.88022 0.83070 0.79154 1.90618 1.60321 1.32521 1.62515 1.46045 1.24386 1.13049 1.52350 1.18628 0.81864 0.96853 0.89389 1.22438 1.11020 0.96180 1.37118 0.90629 1.27649 0.92211 1.08323 0.94989 1.70906 1.38379 1.02912 1.44373 0.82797 0.76652 0.69171 0.76528 1.18875 1.18807 1.21188 1.22642 0.90686 0.94258 0.96165 0.91658 1.21726 1.02105 1.01819 0.93491 0.85001 0.92160 0.91693 0.88212 0.89570 0.90792 0.93999 0.89895 0.85479 0.75606 0.99947 0.99956 0.93683 0.91276 0.91050 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.97 10.52 -51.45 -0.54 -6.52 16 3 C 0.47 9.36 7.05 71.24 0.50 9.86 16 4 O -0.53 -13.19 15.22 21.97 0.33 -12.86 16 5 C -0.08 -1.46 3.11 -10.65 -0.03 -1.50 16 6 H 0.14 2.04 7.84 -2.39 -0.02 2.02 16 7 C -0.10 -1.95 6.61 31.49 0.21 -1.74 16 8 C 0.03 0.75 5.80 86.45 0.50 1.25 16 9 N -0.50 -13.50 4.74 -861.22 -4.09 -17.58 16 10 C 0.04 1.05 5.24 85.56 0.45 1.50 16 11 C 0.50 19.89 7.63 87.66 0.67 20.56 16 12 O -0.58 -28.21 14.84 -3.01 -0.04 -28.25 16 13 N -0.71 -30.09 5.55 -466.80 -2.59 -32.68 16 14 C 0.26 14.04 4.74 85.63 0.41 14.44 16 15 C -0.63 -34.80 9.28 25.60 0.24 -34.56 16 16 H 0.08 3.82 7.60 -2.91 -0.02 3.80 16 17 C -0.03 -1.88 5.46 84.66 0.46 -1.42 16 18 N -0.93 -58.04 13.65 21.45 0.29 -57.75 16 19 Si 1.13 48.12 29.90 68.60 2.05 50.18 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 23 C 0.07 1.49 2.21 45.06 0.10 1.59 16 24 H 0.07 1.51 6.80 -2.39 -0.02 1.49 16 25 C -0.13 -2.42 9.34 71.98 0.67 -1.75 16 26 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 28 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 29 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.09 1.46 7.69 -2.39 -0.02 1.44 16 31 H 0.07 2.44 6.91 -2.39 -0.02 2.42 16 32 H 0.04 1.09 7.82 -2.38 -0.02 1.07 16 33 H 0.08 2.00 7.88 -2.39 -0.02 1.98 16 34 H 0.13 2.92 7.28 -2.39 -0.02 2.90 16 35 H 0.41 14.49 8.32 -92.71 -0.77 13.72 16 36 H -0.02 -1.06 8.01 -2.39 -0.02 -1.07 16 37 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 38 H 0.25 16.44 7.22 -92.70 -0.67 15.77 16 39 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.12 7.36 -2.39 -0.02 1.11 16 Total: -1.00 -75.99 340.31 1.15 -74.84 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.36 Total: 20.87 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.37 Total: 9.75 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -6.38 Total: -108.01 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -0.25 Total: -47.62 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.05 Total: 50.18 kcal Total: -75.99 1.15 -74.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787324084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.274 kcal (2) G-P(sol) polarization free energy of solvation -75.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds