Wall clock time and date at job start Tue Mar 31 2020 03:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00134 * 2 1 4 4 O 1.21510 * 120.00228 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63188 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.89273 * 233.51696 * 6 5 3 8 8 C 1.53070 * 109.29524 * 305.57804 * 7 6 5 9 9 C 1.50701 * 109.45322 * 181.24287 * 8 7 6 10 10 O 1.21287 * 120.00040 * 239.78637 * 9 8 7 11 11 N 1.34774 * 120.00230 * 59.79291 * 9 8 7 12 12 C 1.46495 * 120.00468 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46661 * 324.99568 * 12 11 9 14 14 C 1.52996 * 109.46962 * 84.99467 * 12 11 9 15 15 C 1.50697 * 109.46965 * 204.99776 * 12 11 9 16 16 H 1.07998 * 120.00448 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99809 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99828 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00336 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46934 * 89.99689 * 19 17 15 21 21 H 1.48491 * 109.47352 * 209.99769 * 19 17 15 22 22 H 1.48500 * 109.46956 * 330.00211 * 19 17 15 23 23 C 1.53039 * 109.65812 * 61.15209 * 8 7 6 24 24 C 1.46928 * 120.62829 * 359.97438 * 5 3 2 25 25 H 1.08997 * 109.47074 * 300.00318 * 1 2 3 26 26 H 1.09007 * 109.46800 * 60.00185 * 1 2 3 27 27 H 1.09000 * 109.47322 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.58751 * 353.37646 * 6 5 3 29 29 H 1.08996 * 109.58750 * 113.65831 * 6 5 3 30 30 H 1.08997 * 109.50046 * 65.38734 * 7 6 5 31 31 H 1.09003 * 109.49733 * 185.48713 * 7 6 5 32 32 H 1.09008 * 109.33938 * 301.13543 * 8 7 6 33 33 H 0.97011 * 119.99581 * 359.97438 * 11 9 8 34 34 H 1.09010 * 109.46832 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.47563 * 299.99833 * 14 12 11 36 36 H 1.08997 * 109.47139 * 60.00678 * 14 12 11 37 37 H 0.97004 * 119.99991 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.49876 * 178.74890 * 23 8 7 39 39 H 1.09001 * 109.49731 * 58.65147 * 23 8 7 40 40 H 1.08998 * 109.58787 * 246.20220 * 24 5 3 41 41 H 1.09007 * 109.58600 * 6.48533 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0846 2.6118 -1.1639 8 6 6.0242 1.4071 -1.0688 9 6 7.0231 1.4595 -2.1960 10 8 7.0808 0.5513 -2.9978 11 7 7.8524 2.5154 -2.3130 12 6 8.8231 2.5667 -3.4090 13 1 9.1847 1.5605 -3.6213 14 6 8.1521 3.1416 -4.6580 15 6 9.9825 3.4439 -3.0126 16 1 9.9948 3.9165 -2.0416 17 6 11.0275 3.6434 -3.8896 18 7 11.0126 3.0675 -5.0720 19 14 12.4643 4.7314 -3.3987 20 1 13.5055 3.9065 -2.7347 21 1 13.0375 5.3709 -4.6100 22 1 11.9922 5.7815 -2.4608 23 6 5.2133 0.1129 -1.1659 24 6 4.2229 0.0467 0.0017 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.3564 3.3686 -0.1174 29 1 4.6248 2.7042 0.9419 30 1 4.5408 2.5729 -2.1077 31 1 5.6649 3.5333 -1.1155 32 1 6.5512 1.4348 -0.1150 33 1 7.8060 3.2420 -1.6718 34 1 8.8743 3.1793 -5.4737 35 1 7.3135 2.5071 -4.9448 36 1 7.7905 4.1477 -4.4457 37 1 11.7477 3.2081 -5.6892 38 1 5.8869 -0.7428 -1.1202 39 1 4.6664 0.0961 -2.1086 40 1 4.7699 -0.0274 0.9415 41 1 3.5757 -0.8227 -0.1140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824688320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:26 Heat of formation + Delta-G solvation = -127.048202 kcal Electronic energy + Delta-G solvation = -22890.644747 eV Core-core repulsion = 19384.323741 eV Total energy + Delta-G solvation = -3506.321006 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83670 -39.44084 -37.70718 -36.29969 -34.82044 -33.20253 -32.27916 -31.20798 -29.02536 -27.90554 -25.77162 -25.24929 -23.44538 -22.33419 -20.96264 -20.04512 -19.28611 -18.30820 -17.35566 -17.00197 -16.68581 -15.75056 -15.27785 -15.02562 -14.70433 -14.52162 -14.38630 -14.09022 -13.64153 -13.27287 -13.20775 -12.78893 -12.46040 -12.39869 -12.24661 -11.86170 -11.63712 -11.38756 -11.09224 -10.99669 -10.97656 -10.89115 -10.76083 -10.63088 -10.52596 -10.31151 -10.24640 -9.11939 -9.06728 -8.82181 -8.55562 -7.91625 -6.13624 -4.23095 1.97262 2.64204 3.23334 3.30075 3.31663 3.36561 3.70015 4.04126 4.35791 4.62195 4.75150 4.89429 4.91408 4.97923 5.01324 5.13437 5.18833 5.21830 5.33510 5.37610 5.57333 5.60165 5.64130 5.81786 5.89833 6.05430 6.14744 6.29433 6.33370 6.81661 6.95758 7.13276 7.14504 7.45537 7.55017 7.68336 7.90428 8.08860 8.14094 8.66032 8.76969 9.12304 9.44780 10.92329 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039592 B = 0.003191 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.043212 B = 8772.739751 C = 8968.291587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.649 3.351 4 O -0.577 6.577 5 N -0.592 5.592 6 C 0.129 3.871 7 C -0.126 4.126 8 C -0.110 4.110 9 C 0.505 3.495 10 O -0.555 6.555 11 N -0.708 5.708 12 C 0.264 3.736 13 H 0.048 0.952 14 C -0.146 4.146 15 C -0.534 4.534 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.113 4.113 24 C 0.111 3.889 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.388 0.612 34 H 0.089 0.911 35 H 0.014 0.986 36 H 0.026 0.974 37 H 0.264 0.736 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.950 -4.256 11.926 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.466 6.466 5 N -0.333 5.333 6 C 0.008 3.992 7 C -0.165 4.165 8 C -0.132 4.132 9 C 0.289 3.711 10 O -0.434 6.434 11 N -0.355 5.355 12 C 0.162 3.838 13 H 0.065 0.935 14 C -0.205 4.205 15 C -0.572 4.572 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.152 4.152 24 C -0.011 4.011 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.220 0.780 34 H 0.108 0.892 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.040 -4.631 11.151 20.077 hybrid contribution 0.740 0.999 0.458 1.325 sum -15.300 -3.632 11.609 19.546 Atomic orbital electron populations 1.23181 0.74587 1.03383 1.02668 1.86235 1.24017 1.31096 1.87092 1.18033 0.83214 0.82088 0.76282 1.90981 1.64282 1.34938 1.56411 1.46981 1.01837 1.08893 1.75551 1.21688 0.95261 0.83556 0.98723 1.21952 0.97071 0.98137 0.99312 1.21362 0.95946 0.96529 0.99362 1.20324 0.81879 0.82900 0.85973 1.90655 1.70831 1.37832 1.44071 1.46536 1.36639 1.20822 1.31545 1.18726 0.84870 0.97971 0.82196 0.93456 1.22070 0.99155 0.97478 1.01809 1.21220 1.03947 1.30403 1.01666 0.92095 1.24896 0.98253 0.95823 0.94771 1.69907 1.32084 1.43028 1.07076 0.86448 0.82195 0.80419 0.78030 1.20571 1.21075 1.19843 1.21723 0.97423 0.97461 0.98550 1.21859 0.93777 0.86286 0.99159 0.91957 0.91878 0.88027 0.88364 0.90609 0.90737 0.89410 0.88726 0.77985 0.89205 0.96730 0.95490 0.92572 0.89520 0.90674 0.90927 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -4.11 9.20 -40.31 -0.37 -4.48 16 3 C 0.65 8.48 8.43 54.06 0.46 8.93 16 4 O -0.58 -8.99 15.55 -19.28 -0.30 -9.29 16 5 N -0.59 -6.78 2.97 -178.53 -0.53 -7.31 16 6 C 0.13 1.34 6.43 -3.71 -0.02 1.32 16 7 C -0.13 -1.46 5.28 -26.59 -0.14 -1.60 16 8 C -0.11 -1.44 2.48 -91.71 -0.23 -1.67 16 9 C 0.50 9.54 7.12 -10.99 -0.08 9.46 16 10 O -0.55 -12.86 15.64 5.55 0.09 -12.78 16 11 N -0.71 -14.16 4.95 -54.94 -0.27 -14.43 16 12 C 0.26 6.63 2.56 -69.09 -0.18 6.46 16 13 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 14 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 15 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -24.81 11.32 55.43 0.63 -24.18 16 19 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.11 -1.39 4.66 -26.59 -0.12 -1.51 16 24 C 0.11 1.10 6.45 -3.68 -0.02 1.07 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.10 1.10 7.00 -51.93 -0.36 0.74 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.92 7.53 -51.93 -0.39 0.53 16 32 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.39 6.62 7.93 -40.82 -0.32 6.30 16 34 H 0.09 2.43 6.07 -51.92 -0.32 2.11 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.09 1.09 8.07 -51.93 -0.42 0.67 16 39 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.86 6.93 -51.92 -0.36 0.50 16 LS Contribution 336.30 15.07 5.07 5.07 Total: -1.00 -33.00 336.30 -6.37 -39.36 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.33 Total: 4.53 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 0.68 Total: 8.06 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.18 Total: -45.92 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.58 Total: -26.55 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.00 -6.37 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824688320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.684 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds