Wall clock time and date at job start Tue Mar 31 2020 03:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.70086 * 2 1 4 4 C 1.52763 * 109.51230 * 239.88287 * 2 1 3 5 5 C 1.53033 * 109.38292 * 185.70716 * 4 2 1 6 6 C 1.53042 * 109.54015 * 61.23897 * 5 4 2 7 7 C 1.53188 * 109.31215 * 298.63350 * 6 5 4 8 8 N 1.46921 * 108.77767 * 54.63381 * 7 6 5 9 9 C 1.34778 * 120.63107 * 126.36490 * 8 7 6 10 10 O 1.21284 * 119.99738 * 174.52029 * 9 8 7 11 11 C 1.50689 * 120.00042 * 354.52162 * 9 8 7 12 12 N 1.46503 * 109.47315 * 179.97438 * 11 9 8 13 13 C 1.36941 * 119.99869 * 270.00318 * 12 11 9 14 14 H 1.08000 * 120.00165 * 29.61151 * 13 12 11 15 15 C 1.38813 * 119.99714 * 209.61548 * 13 12 11 16 16 N 1.31620 * 120.00155 * 352.70209 * 15 13 12 17 17 Si 1.86799 * 119.99894 * 172.70280 * 15 13 12 18 18 H 1.48498 * 109.46983 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47323 * 120.00146 * 17 15 13 20 20 H 1.48501 * 109.47071 * 240.00057 * 17 15 13 21 21 C 1.46500 * 119.99931 * 89.99940 * 12 11 9 22 22 C 1.50696 * 109.47114 * 83.78640 * 21 12 11 23 23 O 1.20827 * 120.00221 * 0.02562 * 22 21 12 24 24 O 1.34233 * 120.00209 * 179.97438 * 22 21 12 25 25 H 1.09003 * 109.46946 * 306.08938 * 1 2 3 26 26 H 1.09000 * 109.47086 * 66.08965 * 1 2 3 27 27 H 1.08995 * 109.46753 * 186.09049 * 1 2 3 28 28 H 1.08997 * 109.56205 * 65.67048 * 4 2 1 29 29 H 1.08997 * 109.38379 * 305.63478 * 4 2 1 30 30 H 1.09001 * 109.46310 * 301.21895 * 5 4 2 31 31 H 1.09003 * 109.44960 * 181.25036 * 5 4 2 32 32 H 1.09002 * 109.49860 * 178.68578 * 6 5 4 33 33 H 1.08998 * 109.52320 * 58.60534 * 6 5 4 34 34 H 1.09006 * 109.58929 * 294.84538 * 7 6 5 35 35 H 1.08997 * 109.58963 * 174.42429 * 7 6 5 36 36 H 1.09007 * 109.47632 * 299.99708 * 11 9 8 37 37 H 1.08997 * 109.47474 * 59.99923 * 11 9 8 38 38 H 0.96997 * 120.00190 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.46616 * 203.78651 * 21 12 11 40 40 H 1.09001 * 109.47071 * 323.78364 * 21 12 11 41 41 H 0.96699 * 117.00115 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0403 -0.7225 -1.2455 5 6 3.5638 -0.8461 -1.1726 6 6 3.9523 -1.6686 0.0582 7 6 3.4644 -0.9519 1.3211 8 7 2.0226 -0.6995 1.1945 9 6 1.1674 -1.1069 2.1532 10 8 -0.0058 -0.8066 2.0868 11 6 1.6688 -1.9356 3.3076 12 7 0.5540 -2.2473 4.2056 13 6 0.2520 -1.4031 5.2407 14 1 0.4563 -0.3462 5.1528 15 6 -0.3168 -1.9058 6.4029 16 7 -0.6980 -3.1644 6.4580 17 14 -0.5412 -0.7960 7.8886 18 1 -0.0348 0.5636 7.5718 19 1 -1.9830 -0.7193 8.2360 20 1 0.2164 -1.3502 9.0393 21 6 -0.2376 -3.4621 3.9962 22 6 0.4566 -4.6320 4.6444 23 8 1.5048 -4.4679 5.2225 24 8 -0.0901 -5.8563 4.5805 25 1 -0.3633 0.6054 0.8305 26 1 -0.3633 0.4165 -0.9395 27 1 -0.3632 -1.0218 0.1090 28 1 1.7633 -0.1565 -2.1349 29 1 1.5965 -1.7168 -1.2942 30 1 4.0058 0.1476 -1.0995 31 1 3.9312 -1.3418 -2.0712 32 1 5.0363 -1.7760 0.0967 33 1 3.4910 -2.6543 -0.0019 34 1 3.9929 -0.0048 1.4311 35 1 3.6504 -1.5796 2.1925 36 1 2.1009 -2.8621 2.9293 37 1 2.4289 -1.3764 3.8532 38 1 -1.0950 -3.5157 7.2703 39 1 -1.2247 -3.3335 4.4405 40 1 -0.3418 -3.6481 2.9273 41 1 0.3923 -6.5755 5.0109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828251318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:31 Heat of formation + Delta-G solvation = -89.826507 kcal Electronic energy + Delta-G solvation = -24059.874643 eV Core-core repulsion = 20555.167691 eV Total energy + Delta-G solvation = -3504.706952 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.03825 -38.66492 -37.07361 -35.40466 -34.31767 -32.91013 -32.44294 -31.22883 -28.14573 -27.24728 -26.26772 -24.36664 -22.90830 -21.69164 -20.79502 -19.95939 -18.53772 -16.90659 -16.68466 -16.31003 -15.77391 -15.24836 -14.98490 -14.81382 -14.39365 -14.09331 -14.08066 -13.75189 -13.41948 -13.18006 -12.89176 -12.61672 -12.28709 -11.94276 -11.70935 -11.57437 -11.31934 -11.01604 -10.95665 -10.90473 -10.84177 -10.68417 -10.56157 -10.52859 -10.17221 -10.10349 -9.97059 -9.20467 -8.67904 -8.39515 -8.17047 -6.89788 -5.92885 -3.37543 3.33237 3.37469 3.38640 3.44587 3.47185 3.90487 4.35361 4.57377 4.72591 4.79515 4.83433 5.06041 5.27076 5.32037 5.33232 5.43359 5.49349 5.59991 5.67160 5.76070 5.81761 5.92224 5.98245 6.02922 6.03738 6.12431 6.22842 6.29004 6.48279 6.49560 6.70972 6.98600 7.06177 7.23324 7.73361 7.86232 7.91135 8.26528 8.94405 9.05370 9.45269 9.67648 10.13736 11.18022 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.005528 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.213090 B = 5063.472096 C = 5702.365739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.143 3.857 3 H 0.060 0.940 4 C -0.131 4.131 5 C -0.118 4.118 6 C -0.136 4.136 7 C 0.110 3.890 8 N -0.623 5.623 9 C 0.483 3.517 10 O -0.513 6.513 11 C 0.134 3.866 12 N -0.546 5.546 13 C -0.249 4.249 14 H 0.075 0.925 15 C 0.012 3.988 16 N -0.911 5.911 17 Si 0.916 3.084 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.288 1.288 21 C 0.194 3.806 22 C 0.482 3.518 23 O -0.527 6.527 24 O -0.541 6.541 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.258 0.742 39 H 0.125 0.875 40 H 0.042 0.958 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 1.677 -13.657 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.078 0.922 4 C -0.169 4.169 5 C -0.156 4.156 6 C -0.174 4.174 7 C -0.014 4.014 8 N -0.361 5.361 9 C 0.270 3.730 10 O -0.387 6.387 11 C 0.003 3.997 12 N -0.264 5.264 13 C -0.377 4.377 14 H 0.093 0.907 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.746 3.254 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.215 1.215 21 C 0.066 3.934 22 C 0.323 3.677 23 O -0.414 6.414 24 O -0.351 6.351 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.143 0.857 40 H 0.060 0.940 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.898 2.153 -13.519 15.329 hybrid contribution 0.406 -0.044 1.187 1.255 sum 7.304 2.110 -12.332 14.487 Atomic orbital electron populations 1.22167 0.92765 1.03912 1.00316 1.21057 0.95762 0.94682 0.84507 0.92184 1.21937 0.95789 1.01490 0.97729 1.21496 0.95957 1.00225 0.97872 1.21930 1.00870 0.99664 0.94985 1.21654 0.81131 1.00108 0.98485 1.48475 1.07085 1.59676 1.20844 1.22955 0.86538 0.79989 0.83532 1.90673 1.17397 1.55055 1.75567 1.20772 0.91637 0.97176 0.90158 1.43254 1.31255 1.21397 1.30508 1.19212 1.37696 0.89689 0.91139 0.90725 1.25107 0.99841 0.95871 0.97700 1.69649 1.44614 1.13706 1.27688 0.86002 0.77281 0.79624 0.82499 1.20206 1.21590 1.21508 1.20145 0.97044 0.81579 0.94660 1.25217 0.82896 0.82134 0.77486 1.90487 1.25121 1.84085 1.41659 1.84635 1.56646 1.19813 1.74037 0.90237 0.94760 0.91650 0.91348 0.91619 0.92017 0.92069 0.91026 0.91447 0.91913 0.89341 0.91513 0.90117 0.93114 0.85699 0.94028 0.76490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 7.60 37.16 0.28 -1.77 16 2 C 0.14 1.93 3.47 -67.82 -0.24 1.69 16 3 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.13 -1.41 5.34 -26.84 -0.14 -1.55 16 5 C -0.12 -1.08 5.88 -26.69 -0.16 -1.23 16 6 C -0.14 -1.32 6.08 -26.61 -0.16 -1.48 16 7 C 0.11 1.29 6.35 -3.72 -0.02 1.26 16 8 N -0.62 -9.35 2.98 -165.47 -0.49 -9.85 16 9 C 0.48 9.30 7.57 -10.99 -0.08 9.22 16 10 O -0.51 -11.53 12.00 5.55 0.07 -11.46 16 11 C 0.13 2.74 4.46 -5.20 -0.02 2.72 16 12 N -0.55 -13.69 1.52 -175.99 -0.27 -13.95 16 13 C -0.25 -6.83 9.60 -15.06 -0.14 -6.98 16 14 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 15 C 0.01 0.34 5.37 -17.43 -0.09 0.25 16 16 N -0.91 -25.97 8.64 55.49 0.48 -25.49 16 17 Si 0.92 22.20 29.56 -169.99 -5.02 17.18 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 C 0.19 4.76 5.48 -5.20 -0.03 4.73 16 22 C 0.48 11.71 6.44 36.00 0.23 11.94 16 23 O -0.53 -14.21 16.87 -18.75 -0.32 -14.53 16 24 O -0.54 -11.17 13.42 -39.27 -0.53 -11.70 16 25 H 0.08 1.43 6.59 -51.93 -0.34 1.09 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.14 6.91 -51.93 -0.36 0.78 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.05 5.93 -51.93 -0.31 0.74 16 36 H 0.07 1.28 7.85 -51.93 -0.41 0.87 16 37 H 0.08 1.60 7.61 -51.93 -0.40 1.21 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.13 3.37 6.41 -51.93 -0.33 3.03 16 40 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 41 H 0.38 6.17 9.10 45.56 0.41 6.58 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -33.18 327.93 -7.22 -40.40 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.50 Total: 5.66 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: -0.58 Total: 18.79 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.28 Total: -49.29 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.78 Total: -37.69 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.18 -7.22 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828251318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.423 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds