Wall clock time and date at job start Tue Mar 31 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47173 * 2 1 4 4 C 1.34774 * 120.00353 * 97.69982 * 3 2 1 5 5 O 1.21283 * 120.00024 * 186.69996 * 4 3 2 6 6 C 1.50706 * 119.99900 * 6.69166 * 4 3 2 7 7 H 1.09001 * 109.52083 * 47.26907 * 6 4 3 8 8 C 1.53144 * 109.52430 * 287.13698 * 6 4 3 9 9 O 1.43076 * 109.14688 * 184.78397 * 8 6 4 10 10 C 1.43081 * 113.59356 * 57.95433 * 9 8 6 11 11 C 1.53142 * 109.14966 * 302.04659 * 10 9 8 12 12 O 1.43072 * 109.52071 * 167.46149 * 6 4 3 13 13 C 1.46502 * 119.99904 * 277.69275 * 3 2 1 14 14 C 1.53945 * 113.74537 * 222.10539 * 13 3 2 15 15 N 1.47809 * 86.03655 * 222.08329 * 14 13 3 16 16 C 1.36937 * 134.45637 * 204.64235 * 15 14 13 17 17 H 1.08003 * 120.00333 * 179.87159 * 16 15 14 18 18 C 1.38808 * 119.99871 * 359.86601 * 16 15 14 19 19 N 1.31620 * 120.00300 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99971 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47040 * 90.00417 * 20 18 16 22 22 H 1.48498 * 109.47213 * 210.00043 * 20 18 16 23 23 H 1.48503 * 109.47339 * 330.00340 * 20 18 16 24 24 C 1.47583 * 91.05105 * 24.54821 * 15 14 13 25 25 H 1.08996 * 109.47006 * 188.74596 * 1 2 3 26 26 H 1.08994 * 109.47173 * 68.74009 * 1 2 3 27 27 H 1.09000 * 109.46526 * 308.74045 * 1 2 3 28 28 H 1.09007 * 109.47054 * 120.00110 * 2 1 3 29 29 H 1.09002 * 109.46880 * 239.99459 * 2 1 3 30 30 H 1.09001 * 109.52343 * 304.68586 * 8 6 4 31 31 H 1.09002 * 109.52191 * 64.88501 * 8 6 4 32 32 H 1.08998 * 109.52420 * 61.94644 * 10 9 8 33 33 H 1.08997 * 109.52222 * 182.14188 * 10 9 8 34 34 H 1.08997 * 109.52508 * 175.21372 * 11 10 9 35 35 H 1.09001 * 109.52126 * 295.40957 * 11 10 9 36 36 H 1.09004 * 112.94288 * 353.69562 * 13 3 2 37 37 H 1.09002 * 113.76833 * 336.35214 * 14 13 3 38 38 H 1.08998 * 113.76849 * 107.74455 * 14 13 3 39 39 H 0.97003 * 120.00336 * 180.02562 * 19 18 16 40 40 H 1.08996 * 113.76726 * 221.15116 * 24 15 14 41 41 H 1.09002 * 113.86886 * 89.76997 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3904 1.9644 1.1566 5 8 2.6786 3.1424 1.1765 6 6 2.4483 1.1530 2.4253 7 1 2.9755 0.2180 2.2358 8 6 1.0256 0.8504 2.9045 9 8 1.0884 0.1775 4.1656 10 6 1.7765 0.9197 5.1770 11 6 3.1992 1.2223 4.6977 12 8 3.1364 1.8951 3.4365 13 6 2.1024 2.1284 -1.2573 14 6 3.3885 2.9627 -1.3978 15 7 2.5176 4.0247 -1.9442 16 6 2.7153 5.0925 -2.7784 17 1 1.8883 5.7382 -3.0344 18 6 3.9787 5.3451 -3.2950 19 7 4.9865 4.5579 -2.9834 20 14 4.2485 6.8021 -4.4324 21 1 4.6103 7.9972 -3.6285 22 1 5.3481 6.4924 -5.3812 23 1 3.0018 7.0751 -5.1915 24 6 1.3496 3.4709 -1.2320 25 1 -0.3633 -1.0157 0.1563 26 1 -0.3633 0.3726 -0.9577 27 1 -0.3632 0.6431 0.8016 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 0.4727 1.7831 3.0164 31 1 0.5237 0.2133 2.1763 32 1 1.2489 1.8547 5.3653 33 1 1.8183 0.3327 6.0945 34 1 3.7011 1.8594 5.4258 35 1 3.7520 0.2896 4.5858 36 1 1.8788 1.5163 -2.1311 37 1 3.8511 3.2207 -0.4451 38 1 4.0973 2.5590 -2.1208 39 1 5.8695 4.7347 -3.3441 40 1 0.4337 3.4723 -1.8227 41 1 1.2103 3.8777 -0.2303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949685218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:05 Heat of formation + Delta-G solvation = -40.969187 kcal Electronic energy + Delta-G solvation = -23980.810197 eV Core-core repulsion = 20478.221858 eV Total energy + Delta-G solvation = -3502.588340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.76043 -39.34275 -36.88489 -36.08974 -35.48589 -32.25001 -31.51467 -30.23966 -28.51541 -27.18711 -25.11589 -24.64019 -23.39456 -23.30431 -21.80563 -20.14330 -18.63773 -17.13954 -17.05229 -16.84371 -16.53320 -16.15202 -15.58979 -15.25204 -14.83123 -14.58860 -14.43382 -14.04890 -13.67113 -13.56950 -13.07894 -12.90806 -12.48445 -12.31239 -12.16103 -11.80295 -11.63611 -11.38545 -11.26709 -11.14754 -10.92750 -10.81097 -10.71533 -10.56866 -10.06790 -9.92378 -9.44109 -9.40454 -9.14992 -8.57078 -8.12071 -6.71265 -5.65352 -2.96159 2.76620 2.89010 3.45624 3.46477 3.50701 3.52645 3.80381 4.34546 4.50878 4.57726 4.67954 4.77571 4.81224 4.91753 4.99626 5.09589 5.21681 5.28675 5.35276 5.36177 5.50807 5.54440 5.59770 5.65239 5.70826 5.74434 5.87793 6.12063 6.38606 6.58213 6.64930 6.67198 6.83802 7.00156 7.37126 7.62189 7.66515 7.76310 8.08691 8.53378 9.15736 9.82019 10.73073 11.52121 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.004432 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.987212 B = 6316.155843 C = 6918.063341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.095 3.905 3 N -0.600 5.600 4 C 0.515 3.485 5 O -0.485 6.485 6 C 0.038 3.962 7 H 0.089 0.911 8 C 0.026 3.974 9 O -0.375 6.375 10 C 0.020 3.980 11 C 0.023 3.977 12 O -0.348 6.348 13 C 0.092 3.908 14 C 0.155 3.845 15 N -0.603 5.603 16 C -0.217 4.217 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.112 3.888 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.252 0.748 40 H 0.036 0.964 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 -14.680 13.510 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.029 4.029 3 N -0.336 5.336 4 C 0.299 3.701 5 O -0.357 6.357 6 C -0.024 4.024 7 H 0.107 0.893 8 C -0.051 4.051 9 O -0.294 6.294 10 C -0.057 4.057 11 C -0.054 4.054 12 O -0.266 6.266 13 C -0.011 4.011 14 C 0.029 3.971 15 N -0.329 5.329 16 C -0.345 4.345 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.015 4.015 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.832 -13.793 13.295 20.696 hybrid contribution 0.276 0.755 -0.447 0.919 sum -7.556 -13.038 12.848 19.803 Atomic orbital electron populations 1.22382 0.95920 1.02069 1.03217 1.21702 0.94522 0.83404 1.03275 1.48071 1.64674 1.13598 1.07271 1.19736 0.78776 0.87896 0.83653 1.90818 1.45188 1.14983 1.84667 1.22651 0.94834 0.95627 0.89264 0.89325 1.23562 0.95276 0.99622 0.86675 1.88099 1.76768 1.44610 1.19923 1.23311 0.92899 0.97688 0.91763 1.23322 0.96807 0.98760 0.86549 1.88280 1.75978 1.43281 1.19037 1.24108 1.02142 0.91545 0.83335 1.22721 0.91482 0.85280 0.97599 1.45679 1.04932 1.31136 1.51197 1.18996 0.94547 1.02762 1.18178 0.90310 1.24772 0.95482 0.99288 1.00981 1.69833 1.00055 1.38964 1.47936 0.86124 0.77376 0.82180 0.80114 1.21676 1.21702 1.20665 1.22930 0.91861 0.90539 0.96186 0.91457 0.91516 0.92085 0.90599 0.89990 0.91421 0.86111 0.91845 0.87617 0.87308 0.91998 0.87635 0.92950 0.91442 0.93767 0.94568 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.22 37.16 0.34 -1.22 16 2 C 0.09 0.98 5.60 -4.04 -0.02 0.96 16 3 N -0.60 -9.39 2.74 -167.90 -0.46 -9.84 16 4 C 0.51 9.10 6.44 -10.98 -0.07 9.03 16 5 O -0.48 -11.23 12.29 -13.99 -0.17 -11.40 16 6 C 0.04 0.52 2.41 -27.81 -0.07 0.46 16 7 H 0.09 1.05 7.02 -51.93 -0.36 0.68 16 8 C 0.03 0.29 5.70 37.23 0.21 0.50 16 9 O -0.38 -4.14 10.85 -48.80 -0.53 -4.67 16 10 C 0.02 0.18 7.05 37.23 0.26 0.45 16 11 C 0.02 0.23 7.05 37.23 0.26 0.50 16 12 O -0.35 -5.34 10.06 -62.37 -0.63 -5.97 16 13 C 0.09 1.79 4.59 -70.15 -0.32 1.46 16 14 C 0.16 3.97 6.78 -2.84 -0.02 3.95 16 15 N -0.60 -16.68 3.70 -177.89 -0.66 -17.34 16 16 C -0.22 -6.46 10.70 -15.06 -0.16 -6.62 16 17 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -28.72 11.39 55.49 0.63 -28.09 16 20 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.11 2.52 8.27 -2.97 -0.02 2.49 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.57 6.26 -51.93 -0.32 0.24 16 28 H 0.08 0.65 5.28 -51.92 -0.27 0.38 16 29 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.12 1.14 3.75 -51.93 -0.19 0.94 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 1.86 8.06 -51.93 -0.42 1.45 16 37 H 0.05 1.48 5.71 -51.93 -0.30 1.19 16 38 H 0.07 1.86 7.16 -51.93 -0.37 1.49 16 39 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 1.16 6.32 -51.93 -0.33 0.84 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -36.91 320.17 -7.64 -44.55 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.92 Total: -1.74 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 0.30 Total: 11.58 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.49 Total: -55.27 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.33 Total: -22.04 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.91 -7.64 -44.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949685218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.584 kcal (2) G-P(sol) polarization free energy of solvation -36.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds