Wall clock time and date at job start Tue Mar 31 2020 03:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21740 * 120.00363 * 359.97438 * 9 8 5 11 11 C 1.46376 * 119.99989 * 180.02562 * 9 8 5 12 12 C 1.33982 * 119.23147 * 359.72560 * 11 9 8 13 13 O 1.34997 * 121.68810 * 180.12644 * 12 11 9 14 14 C 1.43243 * 116.82877 * 343.31319 * 13 12 11 15 15 C 1.53554 * 108.08685 * 45.26098 * 14 13 12 16 16 O 1.36219 * 119.23760 * 180.02562 * 11 9 8 17 17 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 18 18 C 1.36935 * 120.00239 * 275.00034 * 17 2 1 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 2 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72253 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72375 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72186 * 22 20 18 26 26 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 28 28 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 29 29 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 30 30 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 31 31 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 32 32 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 33 33 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 34 34 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 35 35 H 1.08003 * 119.15173 * 0.37384 * 12 11 9 36 36 H 1.08995 * 109.74284 * 285.60872 * 14 13 12 37 37 H 1.09007 * 109.73652 * 164.90532 * 14 13 12 38 38 H 1.09000 * 109.75218 * 182.21913 * 15 14 13 39 39 H 1.08994 * 109.75570 * 61.47073 * 15 14 13 40 40 H 0.97004 * 119.99747 * 95.00774 * 17 2 1 41 41 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9385 0.4314 -0.5711 11 6 5.5437 2.6153 -1.2646 12 6 4.6780 3.4621 -1.8379 13 8 4.9802 4.7639 -2.0287 14 6 6.0844 5.2875 -1.2814 15 6 7.2393 4.2791 -1.3676 16 8 6.7740 3.0271 -0.8493 17 7 2.0183 -0.6906 1.1962 18 6 2.1490 -0.0075 2.3758 19 1 1.8918 1.0403 2.4244 20 6 2.6122 -0.6617 3.5091 21 7 2.9205 -1.9400 3.4511 22 14 2.7899 0.2699 5.1184 23 1 3.2931 -0.6500 6.1700 24 1 3.7495 1.3891 4.9391 25 1 1.4684 0.8113 5.5254 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1369 31 1 5.1716 -1.3615 -2.5380 32 1 3.8002 -2.4818 -2.3594 33 1 3.6547 -1.0591 -3.4193 34 1 3.3284 1.4130 -1.9027 35 1 3.7122 3.0946 -2.1518 36 1 5.7925 5.4247 -0.2403 37 1 6.3966 6.2418 -1.7057 38 1 8.0824 4.6331 -0.7743 39 1 7.5447 4.1567 -2.4067 40 1 2.2490 -1.6318 1.1526 41 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133581394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:25 Heat of formation + Delta-G solvation = -81.161857 kcal Electronic energy + Delta-G solvation = -23408.684133 eV Core-core repulsion = 19904.352908 eV Total energy + Delta-G solvation = -3504.331225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16335 -39.36623 -37.27145 -36.66019 -34.61237 -32.89278 -32.01965 -30.58744 -28.56633 -28.26098 -26.38309 -25.49687 -23.41018 -22.48530 -20.94648 -19.95398 -19.57715 -18.46379 -18.28236 -17.32925 -16.53290 -15.85028 -15.43066 -15.00802 -14.83258 -14.70467 -14.30848 -14.20155 -13.91756 -13.52506 -13.43153 -13.17154 -12.98473 -12.40204 -12.14575 -12.06599 -11.69626 -11.69075 -11.18370 -11.02687 -10.79975 -10.70189 -10.47451 -10.44442 -10.09309 -9.90212 -9.65053 -9.08669 -8.85178 -8.82080 -8.26726 -6.94697 -6.00256 -2.99697 1.31901 2.66225 2.98527 3.44266 3.56543 3.61798 3.78141 3.79606 4.10413 4.60795 4.69311 4.72713 4.75107 4.99200 5.06705 5.10991 5.27512 5.32904 5.39888 5.61176 5.69011 5.72310 5.81620 5.87964 5.94156 6.05579 6.21752 6.30082 6.36545 6.47983 6.58803 6.60724 6.74335 6.85669 7.01684 7.19117 7.70656 7.88353 8.45308 8.85059 9.31846 10.17971 10.32285 11.48180 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.005601 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.713997 B = 4997.743731 C = 5941.889687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.147 3.853 6 H 0.104 0.896 7 C -0.162 4.162 8 N -0.709 5.709 9 C 0.574 3.426 10 O -0.513 6.513 11 C -0.056 4.056 12 C -0.006 4.006 13 O -0.303 6.303 14 C 0.013 3.987 15 C 0.018 3.982 16 O -0.284 6.284 17 N -0.731 5.731 18 C -0.326 4.326 19 H 0.061 0.939 20 C -0.044 4.044 21 N -0.943 5.943 22 Si 1.076 2.924 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.297 1.297 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.392 0.608 35 H 0.178 0.822 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.366 0.634 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.814 12.350 -15.939 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.044 3.956 6 H 0.122 0.878 7 C -0.220 4.220 8 N -0.363 5.363 9 C 0.360 3.640 10 O -0.389 6.389 11 C -0.105 4.105 12 C -0.072 4.072 13 O -0.215 6.215 14 C -0.062 4.062 15 C -0.058 4.058 16 O -0.197 6.197 17 N -0.374 5.374 18 C -0.457 4.457 19 H 0.079 0.921 20 C -0.241 4.241 21 N -0.589 5.589 22 Si 0.907 3.093 23 H -0.210 1.210 24 H -0.224 1.224 25 H -0.224 1.224 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.227 0.773 35 H 0.194 0.806 36 H 0.101 0.899 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.094 0.906 40 H 0.199 0.801 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.841 11.903 -13.902 18.700 hybrid contribution -0.710 0.442 -1.783 1.969 sum 3.131 12.345 -15.685 20.204 Atomic orbital electron populations 1.22440 0.99409 1.00753 0.99892 1.20166 0.91603 0.95531 0.86098 0.93545 1.22207 0.93577 1.02324 0.99032 1.21051 0.95125 0.79468 1.00001 0.87768 1.22198 1.01727 1.00165 0.97940 1.45774 1.15598 1.11957 1.62995 1.17034 0.82534 0.85483 0.78969 1.90878 1.50747 1.55628 1.41629 1.20554 0.87433 0.94467 1.08075 1.23053 0.98518 0.82751 1.02869 1.86063 1.49339 1.22830 1.63298 1.23723 0.86669 0.97822 0.97986 1.23657 0.97273 0.83657 1.01187 1.86463 1.29773 1.37200 1.66289 1.42395 1.79131 1.09672 1.06233 1.19939 1.41720 0.94875 0.89146 0.92139 1.25665 0.99443 0.97513 1.01511 1.70874 1.51440 1.08198 1.28344 0.83300 0.75699 0.74417 0.75858 1.21040 1.22380 1.22436 0.93639 0.92830 0.94582 0.90512 0.91775 0.92339 0.91578 0.92929 0.77322 0.80561 0.89937 0.86199 0.86111 0.90596 0.80090 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.49 37.16 0.35 -2.53 16 2 C 0.18 3.35 2.84 -67.93 -0.19 3.16 16 3 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 4 C -0.13 -1.99 4.29 -26.73 -0.11 -2.10 16 5 C 0.15 2.39 2.52 -67.93 -0.17 2.22 16 6 H 0.10 2.23 7.05 -51.93 -0.37 1.87 16 7 C -0.16 -2.21 9.48 37.16 0.35 -1.85 16 8 N -0.71 -10.66 4.38 -55.20 -0.24 -10.90 16 9 C 0.57 10.46 7.69 -12.99 -0.10 10.36 16 10 O -0.51 -11.89 16.58 -10.06 -0.17 -12.05 16 11 C -0.06 -0.87 6.61 -37.81 -0.25 -1.12 16 12 C -0.01 -0.07 10.58 29.24 0.31 0.24 16 13 O -0.30 -3.36 10.47 -30.82 -0.32 -3.68 16 14 C 0.01 0.12 7.30 37.44 0.27 0.39 16 15 C 0.02 0.18 7.31 37.44 0.27 0.45 16 16 O -0.28 -4.48 10.28 -45.77 -0.47 -4.95 16 17 N -0.73 -18.06 4.49 -53.43 -0.24 -18.30 16 18 C -0.33 -9.28 9.93 -15.06 -0.15 -9.43 16 19 H 0.06 1.72 7.83 -52.48 -0.41 1.30 16 20 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 21 N -0.94 -29.96 13.70 55.49 0.76 -29.20 16 22 Si 1.08 27.10 29.92 -169.99 -5.09 22.01 16 23 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.30 -7.08 7.11 56.52 0.40 -6.67 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.39 4.49 6.44 -40.82 -0.26 4.23 16 35 H 0.18 1.61 6.08 -52.48 -0.32 1.29 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.12 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.37 9.43 6.63 -40.82 -0.27 9.15 16 41 H 0.25 7.94 6.77 -40.82 -0.28 7.66 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -37.28 340.74 -6.31 -43.59 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.17 Total: 9.97 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 0.49 Total: -1.62 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.28 Total: -58.40 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.96 Total: -20.68 kcal Atomic # 14 Polarization: 27.10 SS G_CDS: -5.09 Total: 22.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.28 -6.31 -43.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133581394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.567 kcal (2) G-P(sol) polarization free energy of solvation -37.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds