Wall clock time and date at job start Tue Mar 31 2020 03:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21740 * 120.00363 * 359.97438 * 9 8 5 11 11 C 1.46376 * 119.99989 * 180.02562 * 9 8 5 12 12 C 1.33982 * 119.23147 * 359.72560 * 11 9 8 13 13 O 1.34997 * 121.68810 * 180.12644 * 12 11 9 14 14 C 1.43243 * 116.82877 * 343.31319 * 13 12 11 15 15 C 1.53554 * 108.08685 * 45.26098 * 14 13 12 16 16 O 1.36219 * 119.23760 * 180.02562 * 11 9 8 17 17 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 18 18 C 1.36935 * 120.00239 * 275.00034 * 17 2 1 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 2 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72253 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72375 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72186 * 22 20 18 26 26 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 28 28 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 29 29 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 30 30 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 31 31 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 32 32 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 33 33 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 34 34 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 35 35 H 1.08003 * 119.15173 * 0.37384 * 12 11 9 36 36 H 1.08995 * 109.74284 * 285.60872 * 14 13 12 37 37 H 1.09007 * 109.73652 * 164.90532 * 14 13 12 38 38 H 1.09000 * 109.75218 * 182.21913 * 15 14 13 39 39 H 1.08994 * 109.75570 * 61.47073 * 15 14 13 40 40 H 0.97004 * 119.99747 * 95.00774 * 17 2 1 41 41 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9385 0.4314 -0.5711 11 6 5.5437 2.6153 -1.2646 12 6 4.6780 3.4621 -1.8379 13 8 4.9802 4.7639 -2.0287 14 6 6.0844 5.2875 -1.2814 15 6 7.2393 4.2791 -1.3676 16 8 6.7740 3.0271 -0.8493 17 7 2.0183 -0.6906 1.1962 18 6 2.1490 -0.0075 2.3758 19 1 1.8918 1.0403 2.4244 20 6 2.6122 -0.6617 3.5091 21 7 2.9205 -1.9400 3.4511 22 14 2.7899 0.2699 5.1184 23 1 3.2931 -0.6500 6.1700 24 1 3.7495 1.3891 4.9391 25 1 1.4684 0.8113 5.5254 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1369 31 1 5.1716 -1.3615 -2.5380 32 1 3.8002 -2.4818 -2.3594 33 1 3.6547 -1.0591 -3.4193 34 1 3.3284 1.4130 -1.9027 35 1 3.7122 3.0946 -2.1518 36 1 5.7925 5.4247 -0.2403 37 1 6.3966 6.2418 -1.7057 38 1 8.0824 4.6331 -0.7743 39 1 7.5447 4.1567 -2.4067 40 1 2.2490 -1.6318 1.1526 41 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133581394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:25 Heat of formation + Delta-G solvation = -109.338941 kcal Electronic energy + Delta-G solvation = -23409.905983 eV Core-core repulsion = 19904.352908 eV Total energy + Delta-G solvation = -3505.553075 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.15021 -40.65458 -38.53439 -37.92436 -36.27737 -34.42236 -33.48211 -31.69647 -30.18913 -29.51186 -27.66181 -26.41378 -25.54879 -23.66964 -22.25410 -21.44211 -20.65060 -19.57490 -19.34574 -19.29134 -17.50798 -17.14215 -16.82659 -16.32565 -16.12112 -15.92549 -15.78910 -15.47671 -15.27532 -15.05274 -14.68234 -14.55000 -14.29591 -13.56256 -13.46898 -13.20244 -13.14213 -12.92018 -12.77758 -12.53235 -12.20665 -12.00291 -11.91139 -11.87015 -11.71170 -11.57763 -11.17984 -10.99583 -10.89920 -10.19214 -9.28155 -9.04523 -8.34316 -5.25518 0.22878 1.51858 1.61612 1.63283 1.78295 2.05364 2.23959 2.71009 2.74989 3.37456 3.44467 3.66202 3.74180 3.86444 3.93189 3.95923 4.04055 4.23496 4.30088 4.40836 4.46605 4.59955 4.61330 4.72624 4.76829 4.78764 4.86100 4.96046 5.03517 5.15697 5.27265 5.33339 5.49520 5.56055 5.64123 5.74307 6.19256 6.54180 6.56863 7.16449 7.18894 8.07469 8.17720 9.18075 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.005601 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.713997 B = 4997.743731 C = 5941.889687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.166 3.834 3 H 0.042 0.958 4 C -0.118 4.118 5 C 0.148 3.852 6 H 0.042 0.958 7 C -0.152 4.152 8 N -0.692 5.692 9 C 0.566 3.434 10 O -0.583 6.583 11 C -0.101 4.101 12 C 0.040 3.960 13 O -0.302 6.302 14 C 0.011 3.989 15 C 0.010 3.990 16 O -0.328 6.328 17 N -0.744 5.744 18 C -0.314 4.314 19 H 0.060 0.940 20 C -0.111 4.111 21 N -0.979 5.979 22 Si 1.119 2.881 23 H -0.294 1.294 24 H -0.288 1.288 25 H -0.273 1.273 26 H 0.041 0.959 27 H 0.026 0.974 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.412 0.588 35 H 0.208 0.792 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.143 0.857 39 H 0.087 0.913 40 H 0.356 0.644 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 15.080 -18.362 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 H 0.060 0.940 4 C -0.156 4.156 5 C 0.044 3.956 6 H 0.061 0.939 7 C -0.210 4.210 8 N -0.347 5.347 9 C 0.354 3.646 10 O -0.464 6.464 11 C -0.149 4.149 12 C -0.027 4.027 13 O -0.213 6.213 14 C -0.063 4.063 15 C -0.065 4.065 16 O -0.243 6.243 17 N -0.386 5.386 18 C -0.446 4.446 19 H 0.078 0.922 20 C -0.302 4.302 21 N -0.628 5.628 22 Si 0.945 3.055 23 H -0.220 1.220 24 H -0.215 1.215 25 H -0.198 1.198 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.251 0.749 35 H 0.224 0.776 36 H 0.097 0.903 37 H 0.180 0.820 38 H 0.161 0.839 39 H 0.105 0.895 40 H 0.188 0.812 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.084 14.709 -16.406 22.133 hybrid contribution -0.201 -0.242 -1.161 1.203 sum 1.882 14.467 -17.567 22.835 Atomic orbital electron populations 1.22285 0.97453 1.00876 1.00842 1.20507 0.92780 0.95219 0.85698 0.93993 1.22121 0.92211 1.02564 0.98743 1.20901 0.95912 0.80320 0.98509 0.93924 1.22099 1.00362 1.00360 0.98174 1.45612 1.15074 1.11979 1.62047 1.17646 0.82566 0.86512 0.77856 1.90830 1.52855 1.57631 1.45096 1.20244 0.88871 0.93631 1.12182 1.23466 0.98153 0.82654 0.98471 1.86082 1.50086 1.21936 1.63239 1.24040 0.85294 0.98935 0.98069 1.24028 0.98348 0.81912 1.02163 1.86375 1.30310 1.39954 1.67642 1.42623 1.79473 1.09387 1.07157 1.20251 1.39087 0.94886 0.90426 0.92159 1.26981 1.00316 0.97740 1.05119 1.70976 1.54472 1.09442 1.27894 0.82741 0.76837 0.73479 0.72473 1.21983 1.21466 1.19849 0.93947 0.95442 0.89999 0.90182 0.86713 0.94594 0.90821 0.89294 0.74941 0.77596 0.90278 0.81977 0.83926 0.89530 0.81211 0.94689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.49 71.98 0.68 -4.32 16 2 C 0.17 6.06 2.84 44.99 0.13 6.18 16 3 H 0.04 1.57 7.56 -2.38 -0.02 1.55 16 4 C -0.12 -3.23 4.29 30.60 0.13 -3.10 16 5 C 0.15 4.77 2.52 45.00 0.11 4.88 16 6 H 0.04 1.94 7.05 -2.39 -0.02 1.92 16 7 C -0.15 -3.98 9.48 71.98 0.68 -3.29 16 8 N -0.69 -20.25 4.38 -446.75 -1.96 -22.21 16 9 C 0.57 21.28 7.69 86.36 0.66 21.94 16 10 O -0.58 -29.09 16.58 10.07 0.17 -28.92 16 11 C -0.10 -3.10 6.61 23.42 0.15 -2.94 16 12 C 0.04 0.85 10.58 66.85 0.71 1.55 16 13 O -0.30 -5.63 10.47 -69.18 -0.72 -6.35 16 14 C 0.01 0.16 7.30 72.17 0.53 0.69 16 15 C 0.01 0.19 7.31 72.17 0.53 0.71 16 16 O -0.33 -10.55 10.28 -71.82 -0.74 -11.28 16 17 N -0.74 -37.45 4.49 -322.94 -1.45 -38.90 16 18 C -0.31 -18.23 9.93 84.03 0.83 -17.40 16 19 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 20 C -0.11 -6.77 5.50 84.86 0.47 -6.30 16 21 N -0.98 -64.60 13.70 21.65 0.30 -64.30 16 22 Si 1.12 55.61 29.92 68.60 2.05 57.66 16 23 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.41 8.19 6.44 -92.71 -0.60 7.59 16 35 H 0.21 2.90 6.08 -2.91 -0.02 2.88 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.16 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.36 19.12 6.63 -92.71 -0.61 18.51 16 41 H 0.24 15.94 6.77 -92.71 -0.63 15.31 16 Total: -1.00 -88.40 340.74 3.24 -85.16 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.03 Total: 30.55 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.62 Total: -1.40 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -3.11 Total: -125.41 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.30 Total: -46.56 kcal Atomic # 14 Polarization: 55.61 SS G_CDS: 2.05 Total: 57.66 kcal Total: -88.40 3.24 -85.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133581394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.177 kcal (2) G-P(sol) polarization free energy of solvation -88.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds