Wall clock time and date at job start Tue Mar 31 2020 04:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20761 * 120.00335 * 2 1 4 4 C 1.50706 * 119.99938 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47238 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.46947 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.46946 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00082 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00217 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.88649 * 31.11533 * 10 9 7 12 12 C 1.54905 * 111.00625 * 267.19370 * 10 9 7 13 13 N 1.47429 * 104.83654 * 204.91313 * 12 10 9 14 14 C 1.36929 * 125.65038 * 204.17683 * 13 12 10 15 15 H 1.07996 * 120.00117 * 359.96484 * 14 13 12 16 16 C 1.38812 * 120.00037 * 179.97438 * 14 13 12 17 17 N 1.31615 * 119.99708 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00139 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46965 * 89.99600 * 18 16 14 20 20 H 1.48504 * 109.47364 * 209.99593 * 18 16 14 21 21 H 1.48500 * 109.47040 * 329.99780 * 18 16 14 22 22 C 1.47025 * 108.69601 * 24.12990 * 13 12 10 23 23 C 1.54324 * 107.27642 * 358.93954 * 22 13 12 24 24 H 1.08996 * 110.71803 * 96.17051 * 23 22 13 25 25 O 1.42899 * 110.71901 * 219.44519 * 23 22 13 26 26 H 1.08998 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47307 * 300.00716 * 1 2 3 28 28 H 1.09005 * 109.47139 * 59.99795 * 1 2 3 29 29 H 1.09001 * 109.46953 * 299.99767 * 4 2 1 30 30 H 1.09000 * 109.47318 * 59.99364 * 4 2 1 31 31 H 1.09001 * 109.46832 * 299.99686 * 5 4 2 32 32 H 1.09004 * 109.47261 * 59.99705 * 5 4 2 33 33 H 1.08992 * 109.47554 * 299.99696 * 6 5 4 34 34 H 1.08996 * 109.47261 * 60.00229 * 6 5 4 35 35 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 36 36 H 1.08999 * 110.36629 * 323.75616 * 12 10 9 37 37 H 1.09009 * 110.36654 * 86.07630 * 12 10 9 38 38 H 0.97006 * 120.00239 * 180.02562 * 17 16 14 39 39 H 1.09008 * 109.87769 * 239.52033 * 22 13 12 40 40 H 1.09004 * 109.87880 * 118.36072 * 22 13 12 41 41 H 0.96692 * 114.00019 * 293.52268 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7647 -1.0256 0.0002 6 6 4.5296 -2.3507 0.0002 7 6 6.0113 -2.0753 0.0004 8 8 6.4156 -0.9319 -0.0001 9 7 6.8870 -3.0998 -0.0001 10 6 8.3274 -2.8322 0.0006 11 1 8.5500 -1.9044 0.5276 12 6 8.8868 -2.7993 -1.4436 13 7 10.3146 -3.1385 -1.3032 14 6 11.3065 -2.7961 -2.1829 15 1 11.0688 -2.2290 -3.0707 16 6 12.6176 -3.1780 -1.9337 17 7 12.9073 -3.8688 -0.8515 18 14 13.9706 -2.7115 -3.1341 19 1 14.5424 -1.3963 -2.7487 20 1 15.0378 -3.7437 -3.1027 21 1 13.4071 -2.6236 -4.5053 22 6 10.4972 -3.9043 -0.0615 23 6 9.1138 -4.0217 0.6122 24 1 8.6397 -4.9694 0.3569 25 8 9.2277 -3.8773 2.0294 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.9972 -1.8771 0.8892 30 1 1.9971 -1.8764 -0.8908 31 1 4.0284 -0.4535 -0.8894 32 1 4.0277 -0.4546 0.8907 33 1 4.2659 -2.9224 0.8899 34 1 4.2667 -2.9220 -0.8900 35 1 6.5636 -4.0143 -0.0001 36 1 8.3803 -3.5391 -2.0635 37 1 8.7738 -1.8031 -1.8716 38 1 13.8235 -4.1355 -0.6771 39 1 11.1880 -3.3801 0.5991 40 1 10.8829 -4.8975 -0.2919 41 1 9.7111 -4.5953 2.4603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190990308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:46 Heat of formation + Delta-G solvation = -108.110686 kcal Electronic energy + Delta-G solvation = -22201.867813 eV Core-core repulsion = 18696.367999 eV Total energy + Delta-G solvation = -3505.499814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.92419 -39.47101 -37.86096 -35.08150 -34.43507 -33.97537 -31.73952 -31.01554 -28.85347 -27.89831 -26.77164 -24.43770 -22.66999 -20.60428 -20.33887 -20.02676 -19.79096 -17.30692 -16.98713 -16.54117 -16.31150 -15.96909 -15.54551 -15.18595 -15.09800 -14.60862 -14.08860 -13.81778 -13.74913 -13.14697 -12.86454 -12.70654 -12.67536 -12.39084 -12.13691 -12.03366 -12.00146 -11.59766 -11.45971 -11.24173 -10.93037 -10.87898 -10.81192 -10.16038 -9.95579 -9.89883 -9.83559 -9.67176 -9.28078 -8.79598 -8.61167 -6.91034 -5.75888 -3.10375 1.71143 2.86172 3.30128 3.40146 3.45090 3.46657 3.80406 4.44166 4.54663 4.63641 4.73329 4.74191 4.86818 5.01329 5.03489 5.18965 5.23776 5.29813 5.36786 5.43872 5.46645 5.58938 5.66484 5.69887 5.83815 5.96534 6.10187 6.14852 6.23025 6.54898 6.63343 6.91711 7.26726 7.32860 7.47109 7.70986 7.76823 8.12202 8.17952 8.47682 9.15577 9.75649 10.38803 11.35927 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029793 B = 0.002935 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.590748 B = 9538.836669 C =10183.577167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.453 6.453 4 C -0.173 4.173 5 C -0.099 4.099 6 C -0.139 4.139 7 C 0.509 3.491 8 O -0.537 6.537 9 N -0.717 5.717 10 C 0.137 3.863 11 H 0.104 0.896 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.228 4.228 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.924 5.924 18 Si 0.916 3.084 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.153 3.847 23 C 0.068 3.932 24 H 0.057 0.943 25 O -0.563 6.563 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.396 0.604 36 H 0.023 0.977 37 H 0.049 0.951 38 H 0.253 0.747 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.173 -2.948 3.688 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.225 3.775 3 O -0.327 6.327 4 C -0.210 4.210 5 C -0.136 4.136 6 C -0.179 4.179 7 C 0.295 3.705 8 O -0.413 6.413 9 N -0.368 5.368 10 C 0.031 3.969 11 H 0.122 0.878 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.356 4.356 15 H 0.099 0.901 16 C -0.204 4.204 17 N -0.572 5.572 18 Si 0.746 3.254 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.028 3.972 23 C 0.008 3.992 24 H 0.075 0.925 25 O -0.368 6.368 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.653 -1.039 3.544 22.952 hybrid contribution 0.877 -1.030 -0.491 1.439 sum -21.776 -2.069 3.053 22.087 Atomic orbital electron populations 1.22278 0.94702 1.04490 1.04711 1.24663 0.91832 0.90509 0.70511 1.90464 1.71857 1.35236 1.35094 1.22207 0.96734 0.97492 1.04601 1.21161 0.91412 0.96089 1.04987 1.21668 0.92122 0.99906 1.04224 1.20624 0.88519 0.85309 0.76059 1.90739 1.80269 1.21342 1.48945 1.45950 1.06631 1.09026 1.75189 1.22250 0.77692 0.99251 0.97661 0.87770 1.21846 0.86391 0.98719 0.92768 1.44252 1.01368 1.63463 1.23731 1.19092 0.86245 1.29298 1.00974 0.90144 1.24821 0.97253 1.00323 0.98049 1.69924 1.18351 1.42509 1.26419 0.86059 0.81577 0.77658 0.80117 1.21464 1.21642 1.20622 1.21825 0.90187 0.97247 0.87965 1.23463 0.98701 0.96097 0.80947 0.92533 1.86472 1.79072 1.51593 1.19655 0.90064 0.89174 0.89163 0.88318 0.88275 0.90506 0.90579 0.88986 0.88912 0.77013 0.95910 0.93231 0.93657 0.92120 0.93343 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.96 10.33 36.00 0.37 -0.59 16 2 C 0.35 2.93 7.27 -29.03 -0.21 2.72 16 3 O -0.45 -6.07 16.72 6.00 0.10 -5.97 16 4 C -0.17 -1.12 5.55 -27.88 -0.15 -1.28 16 5 C -0.10 -1.05 3.79 -26.73 -0.10 -1.15 16 6 C -0.14 -1.31 5.70 -27.88 -0.16 -1.47 16 7 C 0.51 7.65 7.83 -10.98 -0.09 7.57 16 8 O -0.54 -10.75 15.62 5.56 0.09 -10.67 16 9 N -0.72 -10.50 5.20 -51.73 -0.27 -10.77 16 10 C 0.14 2.62 3.15 -65.78 -0.21 2.42 16 11 H 0.10 2.34 7.54 -51.93 -0.39 1.95 16 12 C 0.13 2.83 6.93 -2.53 -0.02 2.81 16 13 N -0.60 -15.58 3.39 -170.06 -0.58 -16.15 16 14 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 15 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 17 N -0.92 -27.01 10.31 55.49 0.57 -26.44 16 18 Si 0.92 22.30 29.55 -169.99 -5.02 17.28 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.15 3.67 5.15 -3.06 -0.02 3.65 16 23 C 0.07 1.26 3.98 -24.89 -0.10 1.16 16 24 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 25 O -0.56 -9.84 13.39 -35.23 -0.47 -10.31 16 26 H 0.08 0.19 8.00 -51.93 -0.42 -0.23 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 32 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.40 4.39 8.57 -40.82 -0.35 4.05 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 39 H 0.06 1.65 7.29 -51.92 -0.38 1.27 16 40 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 41 H 0.38 4.95 9.12 45.56 0.42 5.37 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -36.80 344.37 -7.01 -43.81 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.69 Total: 5.14 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -0.93 Total: 8.90 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.27 Total: -53.37 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.28 Total: -26.95 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.80 -7.01 -43.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190990308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.299 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds