Wall clock time and date at job start Tue Mar 31 2020 04:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47000 * 2 1 4 4 C 1.42897 * 114.00043 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47161 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99665 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99990 * 180.02562 * 5 4 3 8 8 C 1.47041 * 120.03655 * 0.02562 * 7 5 4 9 9 C 1.53579 * 107.30050 * 130.37748 * 8 7 5 10 10 O 1.42612 * 108.29310 * 55.89770 * 9 8 7 11 11 C 1.42778 * 115.84276 * 295.40090 * 10 9 8 12 12 H 1.08999 * 111.86518 * 290.75889 * 11 10 9 13 13 C 1.54903 * 107.17496 * 166.91970 * 11 10 9 14 14 N 1.47062 * 107.19936 * 266.67563 * 13 11 10 15 15 C 1.36945 * 125.63975 * 180.21797 * 14 13 11 16 16 H 1.08001 * 119.99550 * 174.29695 * 15 14 13 17 17 C 1.38807 * 119.99943 * 354.30550 * 15 14 13 18 18 N 1.31616 * 120.00217 * 6.94196 * 17 15 14 19 19 Si 1.86806 * 119.99878 * 186.94334 * 17 15 14 20 20 H 1.48499 * 109.47021 * 94.98231 * 19 17 15 21 21 H 1.48493 * 109.47512 * 214.98381 * 19 17 15 22 22 H 1.48501 * 109.46905 * 334.98930 * 19 17 15 23 23 C 1.47610 * 108.71512 * 0.24179 * 14 13 11 24 24 C 1.45550 * 120.06139 * 179.87758 * 7 5 4 25 25 H 1.09007 * 110.85562 * 345.99062 * 24 7 5 26 26 H 1.08994 * 109.46966 * 60.00560 * 1 2 3 27 27 H 1.09003 * 109.46720 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47303 * 299.99973 * 1 2 3 29 29 H 1.08988 * 109.47259 * 239.99631 * 2 1 3 30 30 H 1.09005 * 109.46709 * 119.99854 * 2 1 3 31 31 H 1.09002 * 109.46739 * 59.99897 * 4 3 2 32 32 H 1.08997 * 109.47465 * 300.00258 * 4 3 2 33 33 H 1.08999 * 109.90596 * 10.90030 * 8 7 5 34 34 H 1.09001 * 109.89847 * 249.84339 * 8 7 5 35 35 H 1.09001 * 109.69612 * 175.59913 * 9 8 7 36 36 H 1.08994 * 109.69589 * 296.15732 * 9 8 7 37 37 H 1.08998 * 109.89274 * 26.07461 * 13 11 10 38 38 H 1.09003 * 109.89314 * 147.27866 * 13 11 10 39 39 H 0.97006 * 119.99948 * 180.02562 * 18 17 15 40 40 H 1.09006 * 110.42061 * 217.69777 * 23 14 13 41 41 H 1.08998 * 110.52245 * 95.28698 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8194 2.9162 -0.0001 6 8 2.9609 3.7728 -0.0005 7 7 5.1209 3.2664 -0.0002 8 6 6.1624 2.2284 -0.0003 9 6 7.1563 2.5787 -1.1174 10 8 7.6389 3.9011 -0.8887 11 6 6.6661 4.9425 -0.9767 12 1 6.3194 5.0887 -1.9997 13 6 7.3074 6.2192 -0.3781 14 7 6.9305 6.2700 1.0425 15 6 7.2931 7.2480 1.9298 16 1 6.8896 7.2449 2.9315 17 6 8.1791 8.2435 1.5415 18 7 8.5645 8.3284 0.2859 19 14 8.8246 9.4627 2.8011 20 1 10.1338 8.9918 3.3201 21 1 8.9948 10.7919 2.1615 22 1 7.8582 9.5733 3.9232 23 6 6.0972 5.0920 1.3539 24 6 5.4977 4.6723 -0.0036 25 1 4.6436 5.3023 -0.2523 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 3.8340 0.9764 -0.8892 32 1 3.8333 0.9767 0.8907 33 1 5.7148 1.2536 -0.1940 34 1 6.6745 2.2167 0.9618 35 1 7.9892 1.8758 -1.1018 36 1 6.6543 2.5321 -2.0837 37 1 8.3921 6.1686 -0.4726 38 1 6.9286 7.1014 -0.8942 39 1 9.1840 9.0239 0.0147 40 1 5.3052 5.3605 2.0530 41 1 6.7092 4.2887 1.7641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217231683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:20 Heat of formation + Delta-G solvation = -103.794343 kcal Electronic energy + Delta-G solvation = -23495.732101 eV Core-core repulsion = 19990.419458 eV Total energy + Delta-G solvation = -3505.312643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83267 -39.98879 -38.50993 -37.48640 -36.03273 -34.24398 -32.43567 -31.48097 -29.93693 -29.25746 -28.00143 -26.13867 -24.48340 -23.66297 -22.41169 -22.04395 -19.91820 -19.07377 -18.66592 -17.98863 -17.47928 -17.43250 -16.94198 -16.59079 -16.17116 -16.09343 -15.60881 -15.40932 -14.99385 -14.61243 -14.40079 -13.98248 -13.96237 -13.63966 -13.45345 -13.22195 -12.99654 -12.77768 -12.70233 -12.55636 -12.30365 -12.15464 -12.14764 -12.05623 -11.83347 -11.46317 -11.10282 -10.78785 -10.77750 -10.64696 -9.64387 -8.95500 -7.89996 -5.25843 1.43605 1.46065 1.47949 1.52793 1.57768 2.47483 2.78544 2.82022 3.29566 3.42773 3.47529 3.60676 3.85215 3.99845 4.05936 4.07164 4.17853 4.24010 4.30509 4.32776 4.35759 4.38439 4.51863 4.53742 4.73968 4.79456 4.84616 4.92830 4.94661 5.05251 5.28172 5.32195 5.39109 5.41271 5.63944 6.08140 6.12699 6.31644 6.38567 7.02716 7.04787 7.68345 8.33286 9.21388 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029308 B = 0.003932 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.149767 B = 7118.544270 C = 7695.710017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.406 6.406 4 C 0.055 3.945 5 C 0.505 3.495 6 O -0.576 6.576 7 N -0.596 5.596 8 C 0.067 3.933 9 C 0.038 3.962 10 O -0.390 6.390 11 C 0.078 3.922 12 H 0.089 0.911 13 C 0.196 3.804 14 N -0.622 5.622 15 C -0.249 4.249 16 H 0.081 0.919 17 C -0.060 4.060 18 N -0.948 5.948 19 Si 0.983 3.017 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.269 1.269 23 C 0.139 3.861 24 C 0.113 3.887 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.142 0.858 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.025 0.975 39 H 0.250 0.750 40 H 0.030 0.970 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 -22.839 -3.481 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.326 6.326 4 C -0.024 4.024 5 C 0.295 3.705 6 O -0.454 6.454 7 N -0.330 5.330 8 C -0.054 4.054 9 C -0.038 4.038 10 O -0.309 6.309 11 C 0.019 3.981 12 H 0.107 0.893 13 C 0.071 3.929 14 N -0.349 5.349 15 C -0.378 4.378 16 H 0.099 0.901 17 C -0.254 4.254 18 N -0.596 5.596 19 Si 0.810 3.190 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.194 1.194 23 C 0.013 3.987 24 C 0.007 3.993 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.160 0.840 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.226 -22.038 -3.426 23.771 hybrid contribution 0.338 1.103 0.524 1.267 sum -7.889 -20.934 -2.902 22.559 Atomic orbital electron populations 1.21793 0.93569 1.03481 1.02249 1.22801 0.96021 0.81772 1.02049 1.88001 1.19649 1.29100 1.95814 1.22332 0.83578 0.90916 1.05591 1.21282 0.81485 0.92508 0.75259 1.90708 1.50348 1.53834 1.50558 1.47652 1.06189 1.06120 1.73054 1.22946 0.89446 0.91696 1.01319 1.23301 0.99337 0.84059 0.97140 1.87890 1.35150 1.15712 1.92152 1.23581 0.88338 0.88794 0.97380 0.89348 1.21054 0.97312 0.90917 0.83640 1.44621 1.59517 1.23649 1.07113 1.19421 1.21408 1.03217 0.93732 0.90121 1.25694 0.99911 1.01236 0.98525 1.70144 1.37524 1.35911 1.16005 0.85006 0.78358 0.77538 0.78074 1.21102 1.21815 1.19401 1.21652 0.92663 0.89545 0.94884 1.21944 0.97449 0.83096 0.96780 0.89685 0.92884 0.88356 0.93068 0.91023 0.91319 0.86405 0.86959 0.84003 0.90003 0.84570 0.91540 0.95120 0.95689 0.94024 0.95142 0.94930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.41 -9.57 9.88 -129.94 -1.28 -10.85 16 4 C 0.05 0.99 4.76 71.24 0.34 1.32 16 5 C 0.51 15.12 7.75 87.66 0.68 15.80 16 6 O -0.58 -23.98 15.92 16.02 0.26 -23.72 16 7 N -0.60 -17.20 2.75 -792.52 -2.18 -19.38 16 8 C 0.07 1.25 6.26 86.47 0.54 1.79 16 9 C 0.04 0.80 7.03 72.18 0.51 1.30 16 10 O -0.39 -13.71 9.98 -148.98 -1.49 -15.20 16 11 C 0.08 3.08 4.02 31.73 0.13 3.21 16 12 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 13 C 0.20 10.15 5.05 86.92 0.44 10.59 16 14 N -0.62 -33.91 3.40 -691.62 -2.35 -36.26 16 15 C -0.25 -14.61 10.27 84.03 0.86 -13.75 16 16 H 0.08 4.56 7.84 -2.91 -0.02 4.54 16 17 C -0.06 -3.52 5.48 84.86 0.46 -3.05 16 18 N -0.95 -58.01 10.36 21.65 0.22 -57.78 16 19 Si 0.98 46.82 29.56 68.60 2.03 48.85 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 C 0.14 6.27 6.80 86.58 0.59 6.86 16 24 C 0.11 4.41 3.18 46.07 0.15 4.56 16 25 H 0.09 3.76 7.11 -2.38 -0.02 3.74 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.12 1.19 7.59 -2.39 -0.02 1.17 16 32 H 0.11 1.30 8.00 -2.39 -0.02 1.28 16 33 H 0.14 1.12 5.95 -2.39 -0.01 1.10 16 34 H 0.08 1.63 7.58 -2.39 -0.02 1.61 16 35 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.03 1.79 7.20 -2.39 -0.02 1.77 16 38 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 39 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 40 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.03 1.42 7.32 -2.39 -0.02 1.40 16 Total: -1.00 -81.88 328.46 2.13 -79.75 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.01 Total: 6.15 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: 5.92 Total: 28.45 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -4.31 Total: -113.42 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -2.52 Total: -49.77 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -81.88 2.13 -79.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217231683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.042 kcal (2) G-P(sol) polarization free energy of solvation -81.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds