Wall clock time and date at job start Tue Mar 31 2020 04:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20755 * 120.00255 * 2 1 4 4 C 1.50699 * 119.99939 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47166 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47060 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21292 * 120.00010 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00449 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00679 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.63930 * 36.68405 * 10 9 7 12 12 C 1.54321 * 110.72223 * 273.54744 * 10 9 7 13 13 N 1.47017 * 107.27504 * 219.44016 * 12 10 9 14 14 C 1.36939 * 125.65115 * 178.97102 * 13 12 10 15 15 H 1.07997 * 119.99849 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99880 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00133 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99905 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46869 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46965 * 120.00310 * 18 16 14 21 21 H 1.48495 * 109.47268 * 240.00129 * 18 16 14 22 22 C 1.47431 * 108.70199 * 358.93864 * 13 12 10 23 23 C 1.54907 * 104.82935 * 24.12829 * 22 13 12 24 24 H 1.09003 * 111.00320 * 204.91906 * 23 22 13 25 25 O 1.42905 * 111.00811 * 81.06642 * 23 22 13 26 26 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 240.00316 * 1 2 3 28 28 H 1.09004 * 109.47113 * 120.00297 * 1 2 3 29 29 H 1.09000 * 109.47132 * 299.99916 * 4 2 1 30 30 H 1.08994 * 109.47399 * 59.99751 * 4 2 1 31 31 H 1.09000 * 109.46925 * 299.99919 * 5 4 2 32 32 H 1.08999 * 109.46897 * 59.99819 * 5 4 2 33 33 H 1.09000 * 109.47419 * 299.99903 * 6 5 4 34 34 H 1.08999 * 109.47179 * 60.00279 * 6 5 4 35 35 H 0.97003 * 119.99948 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.88170 * 338.86068 * 12 10 9 37 37 H 1.09000 * 109.88521 * 99.86593 * 12 10 9 38 38 H 0.96995 * 120.00283 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.36725 * 142.96219 * 22 13 12 40 40 H 1.08994 * 110.36183 * 265.18213 * 22 13 12 41 41 H 0.96702 * 114.00007 * 67.79869 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5297 -2.3506 0.0023 7 6 6.0113 -2.0753 0.0022 8 8 6.4157 -0.9317 0.0008 9 7 6.8872 -3.0996 0.0027 10 6 8.3275 -2.8320 0.0020 11 1 8.5560 -1.9571 0.6107 12 6 8.8476 -2.6455 -1.4389 13 7 10.1587 -3.3058 -1.5187 14 6 10.9457 -3.3851 -2.6366 15 1 10.6152 -2.9379 -3.5624 16 6 12.1686 -4.0393 -2.5794 17 7 12.5716 -4.5838 -1.4509 18 14 13.2419 -4.1481 -4.1045 19 1 12.5666 -3.4616 -5.2349 20 1 14.5483 -3.4942 -3.8381 21 1 13.4641 -5.5744 -4.4527 22 6 10.4863 -3.8677 -0.1957 23 6 9.1166 -4.0722 0.4984 24 1 9.2226 -4.0593 1.5832 25 8 8.4962 -5.2829 0.0608 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 -0.5139 -0.8900 29 1 1.9972 -1.8763 0.8908 30 1 1.9972 -1.8771 -0.8891 31 1 4.0284 -0.4542 -0.8889 32 1 4.0277 -0.4538 0.8910 33 1 4.2660 -2.9216 0.8926 34 1 4.2668 -2.9227 -0.8874 35 1 6.5639 -4.0142 0.0035 36 1 8.1567 -3.1065 -2.1449 37 1 8.9506 -1.5834 -1.6613 38 1 13.4260 -5.0413 -1.4111 39 1 11.0019 -4.8217 -0.3058 40 1 11.1004 -3.1686 0.3718 41 1 8.9540 -6.0852 0.3470 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219180865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:49 Heat of formation + Delta-G solvation = -134.573667 kcal Electronic energy + Delta-G solvation = -22333.376567 eV Core-core repulsion = 18826.729232 eV Total energy + Delta-G solvation = -3506.647335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.09125 -40.39121 -39.39743 -36.37754 -35.48976 -35.18993 -33.59321 -31.65194 -30.44819 -29.24151 -28.16915 -26.36061 -23.66135 -22.38665 -21.59970 -21.08989 -20.44541 -19.23367 -18.26449 -17.97557 -17.05823 -16.95697 -16.82121 -16.40910 -16.14922 -15.86735 -15.80980 -15.25318 -14.72086 -14.69676 -14.43167 -14.28611 -13.56981 -13.34023 -13.24126 -13.03083 -12.93506 -12.80113 -12.73103 -12.68916 -12.35841 -12.25446 -12.09969 -11.92261 -11.84809 -11.68853 -10.99820 -10.86196 -10.73656 -10.49447 -10.06877 -8.92888 -7.83122 -5.26716 1.11099 1.44894 1.45897 1.56367 1.68193 2.17104 2.47607 3.17942 3.26118 3.27856 3.60608 3.79831 3.85153 3.94326 4.10298 4.11721 4.18862 4.29938 4.46113 4.51772 4.63206 4.71731 4.73889 4.78206 4.81613 4.83987 4.89824 5.02385 5.19939 5.30573 5.32273 5.39356 5.44102 5.53427 5.69524 6.23626 6.66116 6.69066 6.91592 7.06684 7.34708 7.70652 8.33589 9.19193 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.032676 B = 0.002930 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.698985 B = 9553.209360 C =10002.760587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.345 3.655 3 O -0.518 6.518 4 C -0.165 4.165 5 C -0.097 4.097 6 C -0.125 4.125 7 C 0.498 3.502 8 O -0.595 6.595 9 N -0.698 5.698 10 C 0.152 3.848 11 H 0.089 0.911 12 C 0.132 3.868 13 N -0.617 5.617 14 C -0.242 4.242 15 H 0.072 0.928 16 C -0.061 4.061 17 N -0.945 5.945 18 Si 0.982 3.018 19 H -0.273 1.273 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.125 3.875 23 C 0.093 3.907 24 H 0.095 0.905 25 O -0.560 6.560 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.420 0.580 36 H 0.023 0.977 37 H 0.003 0.997 38 H 0.250 0.750 39 H 0.093 0.907 40 H -0.002 1.002 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.033 -2.997 7.050 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.225 3.775 3 O -0.396 6.396 4 C -0.202 4.202 5 C -0.136 4.136 6 C -0.164 4.164 7 C 0.287 3.713 8 O -0.476 6.476 9 N -0.351 5.351 10 C 0.045 3.955 11 H 0.107 0.893 12 C 0.005 3.995 13 N -0.343 5.343 14 C -0.371 4.371 15 H 0.090 0.910 16 C -0.254 4.254 17 N -0.595 5.595 18 Si 0.810 3.190 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.001 4.001 23 C 0.033 3.967 24 H 0.113 0.887 25 O -0.369 6.369 26 H 0.085 0.915 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.259 0.741 36 H 0.041 0.959 37 H 0.021 0.979 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.016 0.984 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -23.682 -1.321 6.709 24.650 hybrid contribution 1.573 -0.278 -0.660 1.728 sum -22.110 -1.599 6.049 22.978 Atomic orbital electron populations 1.22350 0.91574 1.04884 1.06832 1.25444 0.93775 0.90234 0.68010 1.90459 1.73460 1.37375 1.38347 1.22217 0.93019 0.97128 1.07843 1.21078 0.94843 0.95918 1.01742 1.21713 0.87287 0.99867 1.07546 1.21755 0.90856 0.84279 0.74407 1.90712 1.81518 1.23618 1.51758 1.45754 1.04581 1.10593 1.74159 1.21746 0.81104 0.97204 0.95427 0.89315 1.21628 0.87569 0.94160 0.96098 1.44581 1.17604 1.63987 1.08128 1.19423 0.98829 1.29649 0.89176 0.91031 1.25574 0.98762 1.00537 1.00492 1.69947 1.21676 1.42324 1.25546 0.84960 0.78112 0.77315 0.78600 1.19786 1.21750 1.21098 1.22527 0.93331 0.99956 0.84250 1.23216 0.91893 0.84310 0.97298 0.88734 1.86197 1.54524 1.15671 1.80473 0.91507 0.86327 0.86549 0.84683 0.85140 0.94273 0.93622 0.84967 0.85904 0.74135 0.95889 0.97872 0.93988 0.88973 0.98387 0.75332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.39 10.26 71.24 0.73 -0.66 16 2 C 0.35 5.43 7.27 29.10 0.21 5.64 16 3 O -0.52 -14.62 16.71 -1.44 -0.02 -14.64 16 4 C -0.17 -1.68 5.64 29.85 0.17 -1.51 16 5 C -0.10 -2.02 3.79 30.59 0.12 -1.90 16 6 C -0.12 -2.10 5.70 29.85 0.17 -1.93 16 7 C 0.50 14.74 7.83 87.66 0.69 15.43 16 8 O -0.60 -24.18 15.71 -3.07 -0.05 -24.22 16 9 N -0.70 -20.38 5.09 -436.92 -2.22 -22.60 16 10 C 0.15 5.69 3.12 46.18 0.14 5.84 16 11 H 0.09 3.52 7.69 -2.39 -0.02 3.50 16 12 C 0.13 6.21 6.99 86.73 0.61 6.81 16 13 N -0.62 -33.15 3.39 -691.99 -2.35 -35.50 16 14 C -0.24 -14.12 10.27 84.03 0.86 -13.26 16 15 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 16 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 17 N -0.95 -55.17 10.09 21.65 0.22 -54.95 16 18 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 C 0.12 5.98 5.62 86.85 0.49 6.47 16 23 C 0.09 3.27 4.28 31.98 0.14 3.41 16 24 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 25 O -0.56 -17.32 12.23 -148.98 -1.82 -19.14 16 26 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 27 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.04 1.08 8.06 -2.39 -0.02 1.06 16 32 H 0.04 1.20 8.06 -2.39 -0.02 1.18 16 33 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.42 9.99 7.57 -92.71 -0.70 9.28 16 36 H 0.02 1.09 8.03 -2.38 -0.02 1.07 16 37 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.09 4.85 5.87 -2.39 -0.01 4.84 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.40 9.50 9.12 -74.06 -0.68 8.83 16 Total: -1.00 -84.06 342.28 0.23 -83.83 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.33 Total: 17.69 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 4.79 Total: 21.31 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -4.35 Total: -113.05 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -1.89 Total: -58.01 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -84.06 0.23 -83.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219180865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.746 kcal (2) G-P(sol) polarization free energy of solvation -84.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds