Wall clock time and date at job start Tue Mar 31 2020 03:07:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86804 * 119.99961 * 2 1
4 4 H 1.48494 * 109.47232 * 240.00630 * 3 2 1
5 5 H 1.48504 * 109.47124 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.46828 * 120.00155 * 3 2 1
7 7 C 1.37872 * 119.99866 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00155 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00223 * 359.97438 * 7 2 1
10 10 N 1.46496 * 109.47265 * 180.02562 * 9 7 2
11 11 C 1.38055 * 126.34910 * 90.02532 * 10 9 7
12 12 C 1.38836 * 134.14442 * 359.96033 * 11 10 9
13 13 C 1.37853 * 119.68764 * 179.97438 * 12 11 10
14 14 C 1.38766 * 120.45492 * 0.02562 * 13 12 11
15 15 C 1.36605 * 120.67061 * 359.97438 * 14 13 12
16 16 C 1.39735 * 119.88505 * 359.97438 * 15 14 13
17 17 N 1.35784 * 133.60201 * 180.02562 * 16 15 14
18 18 C 1.30112 * 109.64625 * 180.02562 * 17 16 15
19 19 C 1.50698 * 124.94927 * 180.02562 * 18 17 16
20 20 C 1.53001 * 109.47428 * 59.96757 * 19 18 17
21 21 C 1.52997 * 109.46854 * 179.97438 * 20 19 18
22 22 C 1.52999 * 109.47197 * 60.00257 * 21 20 19
23 23 C 1.52998 * 109.47136 * 300.00008 * 22 21 20
24 24 C 1.52992 * 109.47574 * 59.99827 * 23 22 21
25 25 H 0.97001 * 120.00191 * 359.97438 * 1 2 3
26 26 H 1.08996 * 109.47240 * 60.00554 * 9 7 2
27 27 H 1.08998 * 109.47073 * 300.00603 * 9 7 2
28 28 H 1.07997 * 120.15237 * 0.02562 * 12 11 10
29 29 H 1.08007 * 119.76960 * 180.02562 * 13 12 11
30 30 H 1.07999 * 119.66554 * 180.27192 * 14 13 12
31 31 H 1.08000 * 120.05853 * 180.02562 * 15 14 13
32 32 H 1.09002 * 109.46666 * 179.97438 * 19 18 17
33 33 H 1.09000 * 109.47168 * 300.00290 * 20 19 18
34 34 H 1.09004 * 109.46809 * 60.00286 * 20 19 18
35 35 H 1.09000 * 109.47522 * 300.00137 * 21 20 19
36 36 H 1.09007 * 109.47174 * 180.02562 * 21 20 19
37 37 H 1.09003 * 109.47180 * 179.97438 * 22 21 20
38 38 H 1.09002 * 109.47244 * 60.00023 * 22 21 20
39 39 H 1.09000 * 109.46810 * 299.99647 * 23 22 21
40 40 H 1.09002 * 109.47120 * 180.02562 * 23 22 21
41 41 H 1.08994 * 109.47422 * 180.02562 * 24 23 22
42 42 H 1.09000 * 109.47196 * 59.99500 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2841 2.7465 0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4991 -0.0005
10 7 2.2030 -3.6126 -0.0005
11 6 2.7343 -4.2349 1.1114
12 6 2.5854 -4.0606 2.4807
13 6 3.2788 -4.8734 3.3518
14 6 4.1237 -5.8627 2.8692
15 6 4.2826 -6.0488 1.5253
16 6 3.5892 -5.2376 0.6233
17 7 3.5365 -5.1767 -0.7322
18 6 2.7255 -4.2267 -1.0962
19 6 2.4110 -3.8599 -2.5237
20 6 1.7982 -5.0667 -3.2372
21 6 1.4783 -4.6940 -4.6862
22 6 2.7651 -4.2777 -5.4017
23 6 3.3779 -3.0710 -4.6881
24 6 3.6978 -3.4436 -3.2392
25 1 -0.4850 0.8400 0.0004
26 1 0.6241 -2.5568 -0.8903
27 1 0.6246 -2.5570 0.8896
28 1 1.9288 -3.2923 2.8615
29 1 3.1636 -4.7392 4.4173
30 1 4.6573 -6.4952 3.5632
31 1 4.9424 -6.8221 1.1605
32 1 1.7032 -3.0311 -2.5382
33 1 2.5060 -5.8954 -3.2226
34 1 0.8812 -5.3629 -2.7277
35 1 0.7703 -3.8654 -4.7005
36 1 1.0414 -5.5536 -5.1945
37 1 2.5373 -4.0126 -6.4342
38 1 3.4731 -5.1063 -5.3875
39 1 2.6699 -2.2424 -4.7024
40 1 4.2943 -2.7741 -5.1981
41 1 4.1339 -2.5838 -2.7307
42 1 4.4057 -4.2722 -3.2249
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000017364049.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:19
Heat of formation + Delta-G solvation = 34.373579 kcal
Electronic energy + Delta-G solvation = -22566.949829 eV
Core-core repulsion = 19510.770611 eV
Total energy + Delta-G solvation = -3056.179218 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 284.158 amu
Computer time = 3.56 seconds
Orbital eigenvalues (eV)
-41.48673 -38.24127 -36.59949 -34.11187 -32.33343 -31.42897 -30.51473 -29.81914
-27.94002 -27.19026 -23.49734 -23.39399 -22.31864 -21.48997 -21.02081 -19.70442
-18.78723 -16.84739 -16.64070 -16.14967 -15.50625 -14.65625 -14.58938 -14.48668
-13.93768 -13.85190 -13.68764 -13.34646 -13.09917 -12.55428 -12.31164 -12.17781
-11.96180 -11.91364 -11.49461 -11.40974 -11.02700 -10.96172 -10.86094 -10.83380
-10.79670 -10.34080 -10.22768 -10.14999 -10.04625 -9.84781 -9.31973 -9.23497
-8.72857 -7.60273 -7.40899 -6.35515 -4.44686 1.56082 2.15900 3.16396
3.20953 3.23469 3.45503 3.62764 4.21190 4.46785 4.65271 4.93849
4.98525 5.01315 5.04440 5.29040 5.44226 5.45794 5.52510 5.60863
5.72989 5.74182 5.78771 5.86066 5.89913 6.00866 6.03907 6.15118
6.21249 6.21909 6.34067 6.37620 6.43274 6.44458 6.50639 6.61231
6.73207 6.83610 6.89252 7.01520 7.18808 7.38411 7.51866 7.57375
7.77112 8.00837 8.60264 8.65872 9.23426 10.71691
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.008921 B = 0.008780 C = 0.004958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3137.932290 B = 3188.151865 C = 5645.595993
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.069 3.931
3 Si 0.903 3.097
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.274 1.274
7 C -0.542 4.542
8 H 0.063 0.937
9 C 0.238 3.762
10 N -0.456 5.456
11 C 0.051 3.949
12 C -0.092 4.092
13 C -0.125 4.125
14 C -0.138 4.138
15 C -0.076 4.076
16 C 0.040 3.960
17 N -0.514 5.514
18 C 0.292 3.708
19 C -0.005 4.005
20 C -0.105 4.105
21 C -0.118 4.118
22 C -0.118 4.118
23 C -0.118 4.118
24 C -0.102 4.102
25 H 0.269 0.731
26 H 0.050 0.950
27 H 0.046 0.954
28 H 0.121 0.879
29 H 0.120 0.880
30 H 0.118 0.882
31 H 0.118 0.882
32 H 0.096 0.904
33 H 0.072 0.928
34 H 0.059 0.941
35 H 0.063 0.937
36 H 0.061 0.939
37 H 0.057 0.943
38 H 0.061 0.939
39 H 0.064 0.936
40 H 0.061 0.939
41 H 0.065 0.935
42 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.749 -8.073 -4.031 9.771
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.526 5.526
2 C -0.135 4.135
3 Si 0.730 3.270
4 H -0.198 1.198
5 H -0.209 1.209
6 H -0.199 1.199
7 C -0.580 4.580
8 H 0.081 0.919
9 C 0.119 3.881
10 N -0.140 5.140
11 C -0.061 4.061
12 C -0.113 4.113
13 C -0.145 4.145
14 C -0.159 4.159
15 C -0.096 4.096
16 C -0.081 4.081
17 N -0.235 5.235
18 C 0.027 3.973
19 C -0.026 4.026
20 C -0.143 4.143
21 C -0.155 4.155
22 C -0.156 4.156
23 C -0.156 4.156
24 C -0.141 4.141
25 H 0.079 0.921
26 H 0.068 0.932
27 H 0.064 0.936
28 H 0.139 0.861
29 H 0.138 0.862
30 H 0.136 0.864
31 H 0.136 0.864
32 H 0.114 0.886
33 H 0.091 0.909
34 H 0.078 0.922
35 H 0.082 0.918
36 H 0.079 0.921
37 H 0.076 0.924
38 H 0.080 0.920
39 H 0.083 0.917
40 H 0.080 0.920
41 H 0.084 0.916
42 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 3.887 -8.322 -4.570 10.259
hybrid contribution -0.126 1.650 0.755 1.819
sum 3.761 -6.672 -3.815 8.557
Atomic orbital electron populations
1.69906 1.06040 1.27895 1.48758 1.24913 0.94932 0.99435 0.94199
0.86455 0.79539 0.81919 0.79104 1.19801 1.20853 1.19918 1.21239
0.93617 0.89635 1.53483 0.91852 1.19707 0.86995 0.81749 0.99652
1.46006 1.36146 1.28052 1.03765 1.18944 1.00050 0.97260 0.89895
1.20058 1.01356 1.00434 0.89427 1.20702 0.98462 0.96704 0.98657
1.20439 1.01002 0.99802 0.94633 1.19808 0.99436 0.98773 0.91585
1.19107 1.00276 0.98163 0.90563 1.70285 1.21623 1.21184 1.10389
1.23338 0.92637 0.90482 0.90866 1.19715 0.98839 0.98937 0.85076
1.21505 1.00696 0.97332 0.94783 1.21534 0.97606 1.01078 0.95326
1.21538 0.97249 0.98287 0.98482 1.21535 1.00665 0.98005 0.95383
1.21452 0.96245 1.01742 0.94632 0.92107 0.93177 0.93587 0.86090
0.86204 0.86405 0.86432 0.88566 0.90907 0.92224 0.91787 0.92067
0.92386 0.92023 0.91676 0.92049 0.91630 0.91134
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.16 13.29 55.43 0.74 -23.43 16
2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16
3 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16
4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
7 C -0.54 -14.30 9.39 -34.44 -0.32 -14.62 16
8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16
9 C 0.24 5.81 5.53 -5.20 -0.03 5.79 16
10 N -0.46 -10.35 2.79 -112.44 -0.31 -10.67 16
11 C 0.05 1.11 6.88 -83.98 -0.58 0.54 16
12 C -0.09 -1.80 10.05 -39.50 -0.40 -2.19 16
13 C -0.13 -2.02 10.03 -39.53 -0.40 -2.42 16
14 C -0.14 -2.13 9.96 -39.98 -0.40 -2.53 16
15 C -0.08 -1.33 10.05 -39.61 -0.40 -1.73 16
16 C 0.04 0.83 7.23 -84.70 -0.61 0.22 16
17 N -0.51 -10.87 11.26 -8.23 -0.09 -10.96 16
18 C 0.29 6.11 6.37 -154.82 -0.99 5.12 16
19 C -0.01 -0.10 2.51 -91.77 -0.23 -0.33 16
20 C -0.10 -1.56 5.18 -26.73 -0.14 -1.70 16
21 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16
22 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16
23 C -0.12 -1.55 5.92 -26.74 -0.16 -1.71 16
24 C -0.10 -1.64 5.18 -26.73 -0.14 -1.78 16
25 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
26 H 0.05 1.24 7.00 -51.93 -0.36 0.88 16
27 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16
28 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16
29 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16
30 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16
31 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16
32 H 0.10 1.83 6.66 -51.93 -0.35 1.49 16
33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
LS Contribution 341.36 15.07 5.14 5.14
Total: -1.00 -28.41 341.36 -11.34 -39.75
By element:
Atomic # 1 Polarization: 10.00 SS G_CDS: -6.60 Total: 3.40 kcal
Atomic # 6 Polarization: -13.56 SS G_CDS: -5.20 Total: -18.76 kcal
Atomic # 7 Polarization: -45.38 SS G_CDS: 0.33 Total: -45.05 kcal
Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -28.41 -11.34 -39.75 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000017364049.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.120 kcal
(2) G-P(sol) polarization free energy of solvation -28.406 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.714 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.374 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.56 seconds