Wall clock time and date at job start Tue Mar 31 2020 03:07:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86804 * 119.99961 * 2 1
4 4 H 1.48494 * 109.47232 * 240.00630 * 3 2 1
5 5 H 1.48504 * 109.47124 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.46828 * 120.00155 * 3 2 1
7 7 C 1.37872 * 119.99866 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00155 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00223 * 359.97438 * 7 2 1
10 10 N 1.46496 * 109.47265 * 180.02562 * 9 7 2
11 11 C 1.38055 * 126.34910 * 90.02532 * 10 9 7
12 12 C 1.38836 * 134.14442 * 359.96033 * 11 10 9
13 13 C 1.37853 * 119.68764 * 179.97438 * 12 11 10
14 14 C 1.38766 * 120.45492 * 0.02562 * 13 12 11
15 15 C 1.36605 * 120.67061 * 359.97438 * 14 13 12
16 16 C 1.39735 * 119.88505 * 359.97438 * 15 14 13
17 17 N 1.35784 * 133.60201 * 180.02562 * 16 15 14
18 18 C 1.30112 * 109.64625 * 180.02562 * 17 16 15
19 19 C 1.50698 * 124.94927 * 180.02562 * 18 17 16
20 20 C 1.53001 * 109.47428 * 59.96757 * 19 18 17
21 21 C 1.52997 * 109.46854 * 179.97438 * 20 19 18
22 22 C 1.52999 * 109.47197 * 60.00257 * 21 20 19
23 23 C 1.52998 * 109.47136 * 300.00008 * 22 21 20
24 24 C 1.52992 * 109.47574 * 59.99827 * 23 22 21
25 25 H 0.97001 * 120.00191 * 359.97438 * 1 2 3
26 26 H 1.08996 * 109.47240 * 60.00554 * 9 7 2
27 27 H 1.08998 * 109.47073 * 300.00603 * 9 7 2
28 28 H 1.07997 * 120.15237 * 0.02562 * 12 11 10
29 29 H 1.08007 * 119.76960 * 180.02562 * 13 12 11
30 30 H 1.07999 * 119.66554 * 180.27192 * 14 13 12
31 31 H 1.08000 * 120.05853 * 180.02562 * 15 14 13
32 32 H 1.09002 * 109.46666 * 179.97438 * 19 18 17
33 33 H 1.09000 * 109.47168 * 300.00290 * 20 19 18
34 34 H 1.09004 * 109.46809 * 60.00286 * 20 19 18
35 35 H 1.09000 * 109.47522 * 300.00137 * 21 20 19
36 36 H 1.09007 * 109.47174 * 180.02562 * 21 20 19
37 37 H 1.09003 * 109.47180 * 179.97438 * 22 21 20
38 38 H 1.09002 * 109.47244 * 60.00023 * 22 21 20
39 39 H 1.09000 * 109.46810 * 299.99647 * 23 22 21
40 40 H 1.09002 * 109.47120 * 180.02562 * 23 22 21
41 41 H 1.08994 * 109.47422 * 180.02562 * 24 23 22
42 42 H 1.09000 * 109.47196 * 59.99500 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2841 2.7465 0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4991 -0.0005
10 7 2.2030 -3.6126 -0.0005
11 6 2.7343 -4.2349 1.1114
12 6 2.5854 -4.0606 2.4807
13 6 3.2788 -4.8734 3.3518
14 6 4.1237 -5.8627 2.8692
15 6 4.2826 -6.0488 1.5253
16 6 3.5892 -5.2376 0.6233
17 7 3.5365 -5.1767 -0.7322
18 6 2.7255 -4.2267 -1.0962
19 6 2.4110 -3.8599 -2.5237
20 6 1.7982 -5.0667 -3.2372
21 6 1.4783 -4.6940 -4.6862
22 6 2.7651 -4.2777 -5.4017
23 6 3.3779 -3.0710 -4.6881
24 6 3.6978 -3.4436 -3.2392
25 1 -0.4850 0.8400 0.0004
26 1 0.6241 -2.5568 -0.8903
27 1 0.6246 -2.5570 0.8896
28 1 1.9288 -3.2923 2.8615
29 1 3.1636 -4.7392 4.4173
30 1 4.6573 -6.4952 3.5632
31 1 4.9424 -6.8221 1.1605
32 1 1.7032 -3.0311 -2.5382
33 1 2.5060 -5.8954 -3.2226
34 1 0.8812 -5.3629 -2.7277
35 1 0.7703 -3.8654 -4.7005
36 1 1.0414 -5.5536 -5.1945
37 1 2.5373 -4.0126 -6.4342
38 1 3.4731 -5.1063 -5.3875
39 1 2.6699 -2.2424 -4.7024
40 1 4.2943 -2.7741 -5.1981
41 1 4.1339 -2.5838 -2.7307
42 1 4.4057 -4.2722 -3.2249
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000017364049.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:17
Heat of formation + Delta-G solvation = 21.788458 kcal
Electronic energy + Delta-G solvation = -22567.495561 eV
Core-core repulsion = 19510.770611 eV
Total energy + Delta-G solvation = -3056.724950 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 284.158 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-43.05005 -39.47706 -37.98821 -35.97950 -34.18913 -32.68133 -31.67304 -31.33657
-29.35670 -29.06841 -25.34030 -24.80426 -23.47507 -22.97279 -22.40793 -21.00123
-20.24259 -18.88443 -18.11015 -17.84594 -16.75323 -16.50956 -16.16546 -15.84035
-15.15787 -15.03803 -14.94828 -14.86827 -14.59107 -14.42122 -13.81447 -13.54019
-13.34633 -13.24263 -13.11527 -12.87858 -12.72247 -12.54177 -12.41576 -12.17284
-12.02840 -11.99734 -11.96176 -11.37637 -11.21710 -11.07429 -11.01644 -10.87965
-10.74163 -9.13737 -8.93670 -8.38975 -6.57753 0.10187 0.71444 1.33276
1.34045 1.43005 1.86657 2.00119 2.29606 2.90631 3.00975 3.21741
3.56134 3.80122 3.85169 4.03757 4.20802 4.22551 4.26282 4.36243
4.39223 4.46392 4.56996 4.58520 4.59969 4.62407 4.71591 4.79931
4.84451 4.97030 5.01891 5.11765 5.22615 5.27153 5.27452 5.34554
5.38128 5.39702 5.46675 5.57812 5.63155 5.72479 5.73322 5.79185
6.09236 6.27667 6.56087 7.03200 7.14599 8.66770
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.008921 B = 0.008780 C = 0.004958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3137.932290 B = 3188.151865 C = 5645.595993
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.914 5.914
2 C 0.029 3.971
3 Si 0.964 3.036
4 H -0.267 1.267
5 H -0.271 1.271
6 H -0.273 1.273
7 C -0.554 4.554
8 H 0.046 0.954
9 C 0.258 3.742
10 N -0.475 5.475
11 C 0.015 3.985
12 C -0.124 4.124
13 C -0.105 4.105
14 C -0.122 4.122
15 C -0.082 4.082
16 C 0.012 3.988
17 N -0.521 5.521
18 C 0.279 3.721
19 C -0.005 4.005
20 C -0.097 4.097
21 C -0.114 4.114
22 C -0.113 4.113
23 C -0.115 4.115
24 C -0.096 4.096
25 H 0.274 0.726
26 H 0.038 0.962
27 H 0.024 0.976
28 H 0.109 0.891
29 H 0.159 0.841
30 H 0.167 0.833
31 H 0.142 0.858
32 H 0.072 0.928
33 H 0.072 0.928
34 H 0.048 0.952
35 H 0.059 0.941
36 H 0.084 0.916
37 H 0.082 0.918
38 H 0.069 0.931
39 H 0.056 0.944
40 H 0.079 0.921
41 H 0.038 0.962
42 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.201 -8.979 -3.994 11.119
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.173 4.173
3 Si 0.788 3.212
4 H -0.192 1.192
5 H -0.195 1.195
6 H -0.198 1.198
7 C -0.592 4.592
8 H 0.064 0.936
9 C 0.138 3.862
10 N -0.160 5.160
11 C -0.096 4.096
12 C -0.145 4.145
13 C -0.124 4.124
14 C -0.142 4.142
15 C -0.101 4.101
16 C -0.107 4.107
17 N -0.242 5.242
18 C 0.014 3.986
19 C -0.026 4.026
20 C -0.135 4.135
21 C -0.151 4.151
22 C -0.150 4.150
23 C -0.152 4.152
24 C -0.134 4.134
25 H 0.083 0.917
26 H 0.056 0.944
27 H 0.042 0.958
28 H 0.127 0.873
29 H 0.177 0.823
30 H 0.185 0.815
31 H 0.160 0.840
32 H 0.090 0.910
33 H 0.090 0.910
34 H 0.067 0.933
35 H 0.077 0.923
36 H 0.103 0.897
37 H 0.101 0.899
38 H 0.088 0.912
39 H 0.075 0.925
40 H 0.098 0.902
41 H 0.057 0.943
42 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 5.351 -9.256 -4.524 11.609
hybrid contribution -0.541 1.836 0.895 2.113
sum 4.809 -7.420 -3.629 9.558
Atomic orbital electron populations
1.69988 1.07231 1.28974 1.48975 1.25673 0.95731 1.02471 0.93451
0.85511 0.78504 0.78103 0.79107 1.19213 1.19532 1.19835 1.21308
0.92841 0.90947 1.54121 0.93555 1.19219 0.86977 0.82191 0.97812
1.45935 1.36784 1.28279 1.05009 1.19471 1.01207 0.98227 0.90687
1.20268 1.03099 1.01952 0.89172 1.21210 0.96244 0.94935 1.00058
1.20987 0.99639 0.99095 0.94476 1.20252 0.99147 0.98623 0.92105
1.19653 1.01216 0.99047 0.90813 1.70258 1.21735 1.21246 1.10910
1.23965 0.92599 0.90422 0.91662 1.19832 0.99247 0.99331 0.84149
1.21459 0.99820 0.95916 0.96321 1.21542 0.98246 1.01890 0.93473
1.21527 0.96635 0.97571 0.99268 1.21535 1.01533 0.98687 0.93452
1.21402 0.95192 1.00514 0.96315 0.91652 0.94417 0.95786 0.87276
0.82340 0.81525 0.84048 0.90960 0.90953 0.93320 0.92267 0.89712
0.89927 0.91211 0.92481 0.90210 0.94321 0.91076
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.06 13.29 21.45 0.28 -50.77 16
2 C 0.03 1.54 5.46 84.65 0.46 2.00 16
3 Si 0.96 42.66 29.54 68.60 2.03 44.69 16
4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16
5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16
6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
7 C -0.55 -30.81 9.39 25.60 0.24 -30.57 16
8 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16
9 C 0.26 13.57 5.53 85.63 0.47 14.05 16
10 N -0.47 -23.03 2.79 -509.64 -1.42 -24.45 16
11 C 0.01 0.67 6.88 38.86 0.27 0.94 16
12 C -0.12 -4.93 10.05 22.32 0.22 -4.70 16
13 C -0.10 -3.14 10.03 22.30 0.22 -2.91 16
14 C -0.12 -3.31 9.96 22.01 0.22 -3.09 16
15 C -0.08 -2.70 10.05 22.25 0.22 -2.48 16
16 C 0.01 0.52 7.23 39.45 0.29 0.81 16
17 N -0.52 -22.70 11.26 -179.96 -2.03 -24.72 16
18 C 0.28 12.32 6.37 137.92 0.88 13.20 16
19 C -0.01 -0.19 2.51 -11.54 -0.03 -0.22 16
20 C -0.10 -2.95 5.18 30.59 0.16 -2.79 16
21 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16
22 C -0.11 -2.37 5.92 30.59 0.18 -2.19 16
23 C -0.11 -2.93 5.92 30.59 0.18 -2.75 16
24 C -0.10 -3.17 5.18 30.59 0.16 -3.01 16
25 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16
26 H 0.04 2.03 7.00 -2.39 -0.02 2.02 16
27 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16
28 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16
29 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16
30 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16
31 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16
32 H 0.07 2.99 6.66 -2.39 -0.02 2.98 16
33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16
34 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16
35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
36 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16
37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16
40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16
Total: -1.00 -64.67 341.36 4.18 -60.49
By element:
Atomic # 1 Polarization: 20.00 SS G_CDS: 0.99 Total: 20.98 kcal
Atomic # 6 Polarization: -30.55 SS G_CDS: 4.33 Total: -26.22 kcal
Atomic # 7 Polarization: -96.78 SS G_CDS: -3.16 Total: -99.94 kcal
Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal
Total: -64.67 4.18 -60.49 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000017364049.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.280 kcal
(2) G-P(sol) polarization free energy of solvation -64.673 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.608 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.492 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds