Wall clock time and date at job start Tue Mar 31 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.50702 * 109.46904 * 269.99929 * 3 2 1 5 5 H 1.07993 * 120.00490 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99735 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99825 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47634 * 59.99423 * 8 6 4 10 10 H 1.48503 * 109.47157 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47225 * 299.99175 * 8 6 4 12 12 C 1.34779 * 119.99707 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99922 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00037 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.46866 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.46626 * 179.97438 * 15 14 12 17 17 C 1.47007 * 111.00102 * 46.36849 * 16 15 14 18 18 C 1.53101 * 109.25984 * 182.38977 * 17 16 15 19 19 O 1.43020 * 109.25624 * 303.15226 * 18 17 16 20 20 C 1.43011 * 113.74015 * 58.66851 * 19 18 17 21 21 C 1.53000 * 109.50663 * 181.39561 * 20 19 18 22 22 C 1.52999 * 109.50731 * 61.26372 * 20 19 18 23 23 C 1.47013 * 110.99567 * 169.99994 * 16 15 14 24 24 H 1.09002 * 109.47085 * 270.00430 * 1 2 3 25 25 H 1.09002 * 109.46740 * 30.00103 * 1 2 3 26 26 H 1.09001 * 109.47266 * 149.99827 * 1 2 3 27 27 H 1.08991 * 109.47410 * 30.00046 * 3 2 1 28 28 H 1.09007 * 109.47039 * 150.00320 * 3 2 1 29 29 H 0.97004 * 119.99848 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47247 * 60.00371 * 14 12 2 31 31 H 1.09001 * 109.47358 * 299.99798 * 14 12 2 32 32 H 1.08993 * 109.46955 * 300.00219 * 15 14 12 33 33 H 1.09000 * 109.47050 * 60.00048 * 15 14 12 34 34 H 1.09001 * 109.50810 * 302.32445 * 17 16 15 35 35 H 1.09003 * 109.51180 * 62.45318 * 17 16 15 36 36 H 1.08998 * 109.50743 * 183.21404 * 18 17 16 37 37 H 1.08998 * 109.54038 * 63.10133 * 18 17 16 38 38 H 1.08999 * 109.47338 * 179.78228 * 21 20 19 39 39 H 1.08999 * 109.47024 * 299.78323 * 21 20 19 40 40 H 1.09001 * 109.47014 * 59.78223 * 21 20 19 41 41 H 1.08995 * 109.47281 * 300.21536 * 22 20 19 42 42 H 1.08994 * 109.46980 * 60.21715 * 22 20 19 43 43 H 1.09000 * 109.47230 * 180.21516 * 22 20 19 44 44 H 1.09002 * 109.51035 * 297.54078 * 23 16 15 45 45 H 1.09003 * 109.50879 * 57.63070 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6732 8 14 3.4377 3.4169 -3.4339 9 1 2.1399 3.5953 -4.1334 10 1 4.1803 4.7029 -3.4340 11 1 4.2395 2.3819 -4.1346 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6449 -4.9074 0.0001 17 6 0.5611 -4.8904 -0.9929 18 6 -0.2138 -6.2086 -0.9173 19 8 0.6893 -7.2989 -1.1202 20 6 1.7572 -7.3464 -0.1702 21 6 2.6793 -8.5228 -0.4964 22 6 1.1820 -7.5218 1.2367 23 6 2.5520 -6.0396 -0.2382 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6086 2.0283 0.5138 28 1 3.1500 1.1383 0.5138 29 1 4.0312 4.4434 -0.8505 30 1 0.7583 -2.5299 -0.8903 31 1 0.7590 -2.5303 0.8897 32 1 3.0062 -3.5775 -0.8904 33 1 3.0062 -3.5775 0.8895 34 1 -0.1125 -4.0597 -0.7823 35 1 0.9834 -4.7732 -1.9909 36 1 -0.9824 -6.2239 -1.6901 37 1 -0.6814 -6.3010 0.0629 38 1 3.4952 -8.5562 0.2256 39 1 2.1129 -9.4528 -0.4479 40 1 3.0869 -8.3976 -1.4996 41 1 0.5238 -6.6842 1.4672 42 1 0.6163 -8.4522 1.2845 43 1 1.9962 -7.5541 1.9607 44 1 3.0062 -5.9408 -1.2241 45 1 3.3322 -6.0474 0.5229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036232475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:27 Heat of formation + Delta-G solvation = -76.636109 kcal Electronic energy + Delta-G solvation = -23288.934370 eV Core-core repulsion = 19920.632491 eV Total energy + Delta-G solvation = -3368.301879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30908 -38.97932 -36.25920 -34.79709 -33.83208 -32.65574 -31.03892 -29.18126 -27.77938 -27.51837 -25.99286 -25.18303 -23.93328 -22.74521 -20.96956 -19.48812 -18.36899 -16.88693 -16.55951 -16.52556 -15.77122 -15.58110 -15.45438 -14.93479 -14.90597 -14.64584 -14.16121 -13.77334 -13.55269 -13.06930 -12.65205 -12.54693 -12.31280 -12.28462 -12.18082 -12.05320 -11.98271 -11.83755 -11.74970 -11.43633 -11.25429 -11.09929 -10.95322 -10.81197 -10.56437 -10.42453 -10.16938 -9.71486 -9.65400 -8.90708 -8.44666 -8.44029 -7.65227 -6.05295 -4.10304 3.30636 3.35098 3.36400 3.44056 3.48464 3.62300 4.08994 4.44005 4.53765 4.71070 4.74396 4.84679 4.98906 5.08210 5.17405 5.21584 5.26525 5.29533 5.37071 5.40117 5.42905 5.51418 5.55657 5.60741 5.67237 5.74206 5.77482 5.80859 5.90747 5.93265 6.04828 6.10007 6.15718 6.19749 6.84704 6.87548 7.04490 7.06072 7.43483 7.53061 7.90911 8.22441 8.40989 8.88725 9.08452 9.54772 11.02769 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.029212 B = 0.003207 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.268312 B = 8727.814260 C = 8868.531733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.528 4.528 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.544 6.544 14 C -0.141 4.141 15 C 0.072 3.928 16 N -0.535 5.535 17 C 0.008 3.992 18 C 0.062 3.938 19 O -0.379 6.379 20 C 0.114 3.886 21 C -0.138 4.138 22 C -0.167 4.167 23 C 0.031 3.969 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.600 -21.026 2.518 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.422 6.422 14 C -0.182 4.182 15 C -0.055 4.055 16 N -0.260 5.260 17 C -0.120 4.120 18 C -0.015 4.015 19 O -0.298 6.298 20 C 0.074 3.926 21 C -0.196 4.196 22 C -0.225 4.225 23 C -0.098 4.098 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.088 -21.008 2.887 22.695 hybrid contribution 0.452 0.889 -1.624 1.906 sum -7.636 -20.119 1.264 21.556 Atomic orbital electron populations 1.21630 0.81464 1.02476 1.00422 1.48161 1.06174 1.07885 1.71310 1.19279 0.92564 0.78126 0.97446 1.21396 1.36630 1.06329 0.92292 0.92598 1.24940 0.95337 0.96378 0.97456 1.69922 1.38300 1.14361 1.30802 0.86555 0.78362 0.77837 0.84641 1.20242 1.21126 1.20197 1.20257 0.88069 0.85113 0.77510 1.90669 1.13972 1.87327 1.50262 1.21793 0.99415 0.93104 1.03867 1.21862 0.94908 0.86125 1.02637 1.62331 1.12059 1.03186 1.48395 1.22926 0.95240 0.99274 0.94576 1.22672 0.91721 0.85070 1.01991 1.88007 1.39273 1.48918 1.53644 1.21554 0.87437 0.94254 0.89333 1.21747 0.98513 0.96894 1.02424 1.22267 1.02038 1.02306 0.95868 1.22767 0.95348 0.90590 1.01053 0.93693 0.90816 0.92562 0.95018 0.93854 0.92635 0.89454 0.88818 0.93722 0.89608 0.89002 0.93865 0.88650 0.92044 0.90924 0.91610 0.91905 0.90874 0.92540 0.91725 0.93877 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.93 16 2 N -0.60 -12.82 2.86 -182.95 -0.52 -13.34 16 3 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 4 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.50 10.43 7.67 -10.99 -0.08 10.35 16 13 O -0.54 -13.71 15.56 5.56 0.09 -13.63 16 14 C -0.14 -2.05 3.52 -27.88 -0.10 -2.15 16 15 C 0.07 1.03 4.57 -3.82 -0.02 1.01 16 16 N -0.53 -6.34 4.24 -234.30 -0.99 -7.34 16 17 C 0.01 0.09 4.94 -3.71 -0.02 0.07 16 18 C 0.06 0.60 6.61 37.21 0.25 0.84 16 19 O -0.38 -4.30 10.28 -35.23 -0.36 -4.67 16 20 C 0.11 1.13 1.11 -90.57 -0.10 1.03 16 21 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 22 C -0.17 -1.49 8.17 37.16 0.30 -1.19 16 23 C 0.03 0.34 4.32 -3.71 -0.02 0.33 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 26 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 27 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.09 1.13 5.54 -51.93 -0.29 0.84 16 31 H 0.09 1.19 8.11 -51.93 -0.42 0.76 16 32 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 33 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.09 0.88 6.05 -51.93 -0.31 0.56 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.55 6.49 -51.93 -0.34 0.21 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.71 6.12 -51.93 -0.32 0.39 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -33.48 353.09 -7.89 -41.37 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.85 Total: -2.71 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 0.71 Total: 4.09 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.78 Total: -46.74 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.28 Total: -18.29 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.48 -7.89 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036232475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.267 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds