Wall clock time and date at job start Tue Mar 31 2020 03:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.50702 * 109.46904 * 269.99929 * 3 2 1 5 5 H 1.07993 * 120.00490 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99735 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99825 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47634 * 59.99423 * 8 6 4 10 10 H 1.48503 * 109.47157 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47225 * 299.99175 * 8 6 4 12 12 C 1.34779 * 119.99707 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99922 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00037 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.46866 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.46626 * 179.97438 * 15 14 12 17 17 C 1.47007 * 111.00102 * 46.36849 * 16 15 14 18 18 C 1.53101 * 109.25984 * 182.38977 * 17 16 15 19 19 O 1.43020 * 109.25624 * 303.15226 * 18 17 16 20 20 C 1.43011 * 113.74015 * 58.66851 * 19 18 17 21 21 C 1.53000 * 109.50663 * 181.39561 * 20 19 18 22 22 C 1.52999 * 109.50731 * 61.26372 * 20 19 18 23 23 C 1.47013 * 110.99567 * 169.99994 * 16 15 14 24 24 H 1.09002 * 109.47085 * 270.00430 * 1 2 3 25 25 H 1.09002 * 109.46740 * 30.00103 * 1 2 3 26 26 H 1.09001 * 109.47266 * 149.99827 * 1 2 3 27 27 H 1.08991 * 109.47410 * 30.00046 * 3 2 1 28 28 H 1.09007 * 109.47039 * 150.00320 * 3 2 1 29 29 H 0.97004 * 119.99848 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47247 * 60.00371 * 14 12 2 31 31 H 1.09001 * 109.47358 * 299.99798 * 14 12 2 32 32 H 1.08993 * 109.46955 * 300.00219 * 15 14 12 33 33 H 1.09000 * 109.47050 * 60.00048 * 15 14 12 34 34 H 1.09001 * 109.50810 * 302.32445 * 17 16 15 35 35 H 1.09003 * 109.51180 * 62.45318 * 17 16 15 36 36 H 1.08998 * 109.50743 * 183.21404 * 18 17 16 37 37 H 1.08998 * 109.54038 * 63.10133 * 18 17 16 38 38 H 1.08999 * 109.47338 * 179.78228 * 21 20 19 39 39 H 1.08999 * 109.47024 * 299.78323 * 21 20 19 40 40 H 1.09001 * 109.47014 * 59.78223 * 21 20 19 41 41 H 1.08995 * 109.47281 * 300.21536 * 22 20 19 42 42 H 1.08994 * 109.46980 * 60.21715 * 22 20 19 43 43 H 1.09000 * 109.47230 * 180.21516 * 22 20 19 44 44 H 1.09002 * 109.51035 * 297.54078 * 23 16 15 45 45 H 1.09003 * 109.50879 * 57.63070 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6732 8 14 3.4377 3.4169 -3.4339 9 1 2.1399 3.5953 -4.1334 10 1 4.1803 4.7029 -3.4340 11 1 4.2395 2.3819 -4.1346 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6449 -4.9074 0.0001 17 6 0.5611 -4.8904 -0.9929 18 6 -0.2138 -6.2086 -0.9173 19 8 0.6893 -7.2989 -1.1202 20 6 1.7572 -7.3464 -0.1702 21 6 2.6793 -8.5228 -0.4964 22 6 1.1820 -7.5218 1.2367 23 6 2.5520 -6.0396 -0.2382 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6086 2.0283 0.5138 28 1 3.1500 1.1383 0.5138 29 1 4.0312 4.4434 -0.8505 30 1 0.7583 -2.5299 -0.8903 31 1 0.7590 -2.5303 0.8897 32 1 3.0062 -3.5775 -0.8904 33 1 3.0062 -3.5775 0.8895 34 1 -0.1125 -4.0597 -0.7823 35 1 0.9834 -4.7732 -1.9909 36 1 -0.9824 -6.2239 -1.6901 37 1 -0.6814 -6.3010 0.0629 38 1 3.4952 -8.5562 0.2256 39 1 2.1129 -9.4528 -0.4479 40 1 3.0869 -8.3976 -1.4996 41 1 0.5238 -6.6842 1.4672 42 1 0.6163 -8.4522 1.2845 43 1 1.9962 -7.5541 1.9607 44 1 3.0062 -5.9408 -1.2241 45 1 3.3322 -6.0474 0.5229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036232475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:26 Heat of formation + Delta-G solvation = -100.370003 kcal Electronic energy + Delta-G solvation = -23289.963549 eV Core-core repulsion = 19920.632491 eV Total energy + Delta-G solvation = -3369.331058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24102 -40.51622 -37.30526 -36.55267 -34.76900 -34.57061 -32.30105 -30.17548 -29.50924 -28.18718 -27.38310 -26.49474 -25.06749 -24.30268 -22.13510 -20.29309 -19.91359 -18.72297 -18.16628 -17.39945 -17.08534 -16.91700 -16.76623 -16.30078 -15.91824 -15.69988 -15.67630 -14.90468 -14.73281 -14.22254 -14.05595 -13.79294 -13.65955 -13.46167 -13.35148 -13.20226 -13.07747 -12.91542 -12.83349 -12.79087 -12.62083 -12.49684 -12.27032 -12.21018 -12.04906 -11.89487 -11.73021 -11.20145 -10.66505 -10.62694 -10.52850 -9.45375 -9.41052 -8.24533 -6.39892 1.34708 1.38987 1.46400 1.81676 2.24421 2.39249 2.76300 2.89771 3.04821 3.69287 3.76090 3.88324 3.96339 4.01371 4.11033 4.14087 4.28312 4.34628 4.44075 4.53198 4.62426 4.67037 4.72497 4.75033 4.78782 4.83143 4.89525 4.93239 4.96897 4.98195 5.01565 5.03673 5.08663 5.21466 5.27642 5.44102 5.53830 5.82331 5.85539 5.92818 6.03923 6.30058 6.67204 6.77524 7.25886 7.46407 8.82385 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.029212 B = 0.003207 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.268312 B = 8727.814260 C = 8868.531733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.546 4.546 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.121 4.121 15 C 0.080 3.920 16 N -0.527 5.527 17 C 0.004 3.996 18 C 0.062 3.938 19 O -0.397 6.397 20 C 0.112 3.888 21 C -0.137 4.137 22 C -0.162 4.162 23 C 0.028 3.972 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.024 0.976 28 H -0.004 1.004 29 H 0.268 0.732 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.018 0.982 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.029 0.971 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.028 0.972 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 -22.389 1.898 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.183 1.183 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.160 4.160 15 C -0.048 4.048 16 N -0.252 5.252 17 C -0.124 4.124 18 C -0.015 4.015 19 O -0.316 6.316 20 C 0.073 3.927 21 C -0.195 4.195 22 C -0.219 4.219 23 C -0.101 4.101 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.042 0.958 28 H 0.014 0.986 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.036 0.964 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.047 0.953 36 H 0.132 0.868 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.323 -22.393 2.273 24.762 hybrid contribution 1.123 1.289 -1.387 2.202 sum -9.199 -21.104 0.886 23.039 Atomic orbital electron populations 1.21956 0.77669 1.04051 1.02737 1.48202 1.08547 1.06340 1.71103 1.18745 0.91094 0.80526 0.95961 1.21689 1.37007 1.06643 0.93072 0.92889 1.25882 0.94857 0.96413 1.02072 1.70045 1.38822 1.14813 1.33144 0.85464 0.78907 0.77358 0.79063 1.18307 1.20241 1.20432 1.21349 0.87787 0.86726 0.75881 1.90639 1.16820 1.88265 1.52667 1.21713 0.98929 0.88960 1.06415 1.21672 0.94760 0.87582 1.00791 1.62367 1.11968 1.01998 1.48830 1.23067 0.94997 1.00899 0.93447 1.22810 0.91567 0.83800 1.03296 1.87994 1.39743 1.49560 1.54325 1.21670 0.87339 0.93849 0.89886 1.21771 0.98728 0.96502 1.02459 1.22218 1.02181 1.02396 0.95149 1.22854 0.95712 0.91169 1.00332 0.90938 0.91667 0.88595 0.95789 0.98581 0.92337 0.86925 0.85645 0.96407 0.90977 0.87216 0.95257 0.86799 0.91055 0.89506 0.90887 0.92623 0.91514 0.91747 0.91013 0.95398 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.23 10.24 127.77 1.31 3.54 16 2 N -0.61 -25.85 2.86 -851.12 -2.43 -28.29 16 3 C 0.26 14.14 5.16 85.63 0.44 14.58 16 4 C -0.55 -31.86 9.39 25.60 0.24 -31.62 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.40 5.46 84.66 0.46 0.86 16 7 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 8 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 9 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 C 0.49 20.45 7.67 87.66 0.67 21.12 16 13 O -0.60 -31.64 15.56 -3.04 -0.05 -31.69 16 14 C -0.12 -3.24 3.52 29.85 0.11 -3.14 16 15 C 0.08 2.26 4.57 86.31 0.39 2.65 16 16 N -0.53 -11.70 4.24 -895.20 -3.80 -15.50 16 17 C 0.00 0.07 4.94 86.32 0.43 0.50 16 18 C 0.06 1.01 6.61 72.02 0.48 1.49 16 19 O -0.40 -8.25 10.28 -148.98 -1.53 -9.78 16 20 C 0.11 2.04 1.11 -10.76 -0.01 2.03 16 21 C -0.14 -2.04 8.85 71.98 0.64 -1.40 16 22 C -0.16 -2.52 8.17 71.98 0.59 -1.93 16 23 C 0.03 0.59 4.32 86.32 0.37 0.97 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 26 H 0.10 1.98 6.44 -2.39 -0.02 1.97 16 27 H 0.02 1.33 8.07 -2.39 -0.02 1.31 16 28 H 0.00 -0.25 7.42 -2.38 -0.02 -0.27 16 29 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.11 2.51 5.54 -2.39 -0.01 2.50 16 31 H 0.13 2.67 8.11 -2.39 -0.02 2.65 16 32 H 0.02 0.59 8.04 -2.39 -0.02 0.57 16 33 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 34 H 0.11 1.66 6.05 -2.39 -0.01 1.64 16 35 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.05 6.49 -2.39 -0.02 1.03 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.13 6.12 -2.39 -0.01 1.11 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 44 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -75.97 353.09 1.56 -74.41 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.95 Total: 10.46 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 6.11 Total: 9.64 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -5.95 Total: -100.30 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.58 Total: -41.47 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -75.97 1.56 -74.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036232475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.962 kcal (2) G-P(sol) polarization free energy of solvation -75.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds