Wall clock time and date at job start Tue Mar 31 2020 03:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.36827 * 125.03715 * 2 1 4 4 H 0.96999 * 125.06555 * 359.97438 * 3 2 1 5 5 C 1.37693 * 109.87768 * 179.97438 * 3 2 1 6 6 C 1.39122 * 133.50986 * 179.97438 * 5 3 2 7 7 C 1.37756 * 119.77521 * 180.02562 * 6 5 3 8 8 C 1.38826 * 120.66639 * 359.97438 * 7 6 5 9 9 C 1.36618 * 120.53331 * 0.02562 * 8 7 6 10 10 C 1.39636 * 119.76035 * 359.97438 * 9 8 7 11 11 C 1.34242 * 125.03667 * 179.69645 * 2 1 3 12 12 C 1.50707 * 126.49561 * 359.97438 * 11 2 1 13 13 C 1.53041 * 109.45737 * 239.72451 * 12 11 2 14 14 C 1.53189 * 109.31155 * 178.60561 * 13 12 11 15 15 N 1.46929 * 108.76652 * 54.65282 * 14 13 12 16 16 C 1.36939 * 120.62833 * 126.40877 * 15 14 13 17 17 H 1.07999 * 120.00143 * 333.28398 * 16 15 14 18 18 C 1.38808 * 119.99921 * 153.28622 * 16 15 14 19 19 N 1.31625 * 120.00167 * 158.96031 * 18 16 15 20 20 Si 1.86800 * 120.00103 * 338.96131 * 18 16 15 21 21 H 1.48500 * 109.47444 * 95.10097 * 20 18 16 22 22 H 1.48505 * 109.47145 * 215.09907 * 20 18 16 23 23 H 1.48503 * 109.47248 * 335.09631 * 20 18 16 24 24 C 1.46925 * 118.73986 * 306.38468 * 15 14 13 25 25 C 1.53039 * 109.45829 * 119.67017 * 12 11 2 26 26 H 1.08997 * 109.46754 * 87.69496 * 1 2 3 27 27 H 1.09000 * 109.46738 * 327.69755 * 1 2 3 28 28 H 1.08997 * 109.47100 * 207.69573 * 1 2 3 29 29 H 1.07994 * 120.11289 * 0.03561 * 6 5 3 30 30 H 1.08004 * 119.65960 * 179.97438 * 7 6 5 31 31 H 1.08006 * 119.73331 * 180.02562 * 8 7 6 32 32 H 1.08004 * 120.12293 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46133 * 359.69934 * 12 11 2 34 34 H 1.09006 * 109.49849 * 298.56365 * 13 12 11 35 35 H 1.08999 * 109.49696 * 58.66744 * 13 12 11 36 36 H 1.09005 * 109.59676 * 294.86702 * 14 13 12 37 37 H 1.08996 * 109.70805 * 174.50692 * 14 13 12 38 38 H 0.96998 * 119.99950 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.58651 * 293.82345 * 24 15 14 40 40 H 1.09004 * 109.70486 * 173.46439 * 24 15 14 41 41 H 1.09000 * 109.49875 * 301.33629 * 25 12 11 42 42 H 1.09010 * 109.49542 * 61.39956 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1203 0.0000 4 1 1.9624 2.0324 -0.0004 5 6 3.6216 0.7602 0.0006 6 6 4.8099 1.4836 0.0004 7 6 6.0160 0.8180 0.0006 8 6 6.0589 -0.5696 0.0016 9 6 4.9042 -1.2997 0.0018 10 6 3.6705 -0.6456 0.0016 11 6 2.2777 -1.0991 0.0058 12 6 1.8003 -2.5286 0.0139 13 6 2.3293 -3.2356 1.2639 14 6 1.8136 -4.6779 1.2866 15 7 2.1810 -5.3313 0.0229 16 6 2.8651 -6.5176 0.0240 17 1 3.5033 -6.7722 0.8572 18 6 2.7381 -7.3929 -1.0458 19 7 3.6635 -8.3029 -1.2650 20 14 1.2541 -7.2793 -2.1746 21 1 1.5937 -6.4472 -3.3567 22 1 0.8675 -8.6413 -2.6227 23 1 0.1211 -6.6592 -1.4418 24 6 1.8002 -4.6879 -1.2419 25 6 2.3158 -3.2453 -1.2361 26 1 -0.3633 0.0413 -1.0268 27 1 -0.3633 0.8686 0.5492 28 1 -0.3633 -0.9099 0.4776 29 1 4.7870 2.5633 0.0002 30 1 6.9374 1.3815 0.0000 31 1 7.0129 -1.0760 0.0021 32 1 4.9453 -2.3790 0.0021 33 1 0.7104 -2.5475 0.0198 34 1 3.4192 -3.2391 1.2461 35 1 1.9810 -2.7109 2.1535 36 1 0.7290 -4.6767 1.3954 37 1 2.2638 -5.2162 2.1206 38 1 3.5749 -8.9143 -2.0128 39 1 0.7146 -4.6874 -1.3393 40 1 2.2419 -5.2304 -2.0778 41 1 1.9581 -2.7275 -2.1260 42 1 3.4059 -3.2481 -1.2303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048599392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:07 Heat of formation + Delta-G solvation = 69.560154 kcal Electronic energy + Delta-G solvation = -22616.445994 eV Core-core repulsion = 19561.792580 eV Total energy + Delta-G solvation = -3054.653414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31510 -37.78238 -36.94467 -33.83525 -31.81260 -31.00833 -30.44678 -30.20609 -28.91560 -26.76914 -24.90485 -22.67148 -22.15310 -22.07005 -21.20501 -19.51544 -18.80583 -17.42883 -16.71027 -16.04763 -15.20896 -14.98504 -14.77068 -14.33967 -14.00896 -13.75976 -13.53623 -13.24489 -13.15091 -12.99593 -12.88975 -12.54706 -12.24808 -12.11013 -11.72105 -11.49632 -11.36770 -11.29835 -11.01879 -10.70428 -10.41265 -10.33619 -9.98716 -9.84425 -9.54893 -9.44659 -9.18048 -8.53664 -8.03750 -7.41261 -6.87604 -5.87120 -3.20746 1.23999 1.75610 2.76019 3.12589 3.38779 3.53963 3.57313 4.06194 4.60759 4.72874 4.84260 5.03414 5.11226 5.11371 5.24507 5.29837 5.38925 5.42242 5.49246 5.60731 5.68442 5.72000 5.80031 5.83717 6.01397 6.03289 6.09194 6.23185 6.24307 6.36220 6.48027 6.60641 6.62465 6.67452 6.73789 6.77036 6.79635 6.86736 6.88539 7.02682 7.17228 7.31148 7.60470 8.05418 8.40939 9.03815 9.81436 10.20409 11.29136 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.005136 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.316966 B = 5449.923118 C = 6168.499963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.062 3.938 3 N -0.597 5.597 4 H 0.409 0.591 5 C 0.094 3.906 6 C -0.139 4.139 7 C -0.101 4.101 8 C -0.153 4.153 9 C -0.061 4.061 10 C -0.093 4.093 11 C -0.141 4.141 12 C -0.007 4.007 13 C -0.123 4.123 14 C 0.148 3.852 15 N -0.606 5.606 16 C -0.255 4.255 17 H 0.085 0.915 18 C 0.022 3.978 19 N -0.911 5.911 20 Si 0.881 3.119 21 H -0.290 1.290 22 H -0.305 1.305 23 H -0.270 1.270 24 C 0.127 3.873 25 C -0.122 4.122 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.020 0.980 37 H 0.061 0.939 38 H 0.261 0.739 39 H 0.023 0.977 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 21.231 2.757 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 N -0.201 5.201 4 H 0.245 0.755 5 C -0.012 4.012 6 C -0.160 4.160 7 C -0.120 4.120 8 C -0.172 4.172 9 C -0.079 4.079 10 C -0.097 4.097 11 C -0.148 4.148 12 C -0.026 4.026 13 C -0.162 4.162 14 C 0.022 3.978 15 N -0.330 5.330 16 C -0.384 4.384 17 H 0.102 0.898 18 C -0.177 4.177 19 N -0.554 5.554 20 Si 0.712 3.288 21 H -0.218 1.218 22 H -0.233 1.233 23 H -0.195 1.195 24 C 0.001 3.999 25 C -0.161 4.161 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.874 21.165 2.684 21.528 hybrid contribution -0.858 0.565 -0.798 1.301 sum -3.731 21.731 1.886 22.129 Atomic orbital electron populations 1.20439 0.88040 1.03528 1.02817 1.20033 0.93099 0.85436 1.05859 1.41582 1.03972 1.07768 1.66789 0.75474 1.18207 0.84445 0.94284 1.04312 1.19918 0.89847 0.98500 1.07753 1.20749 0.96427 0.94477 1.00363 1.20641 0.98154 0.93820 1.04625 1.20524 0.90440 1.00255 0.96678 1.19053 0.93334 0.91514 1.05822 1.20276 0.90458 0.94505 1.09577 1.19476 0.98884 0.87959 0.96258 1.22029 1.01360 0.97019 0.95804 1.20939 0.96370 0.91147 0.89297 1.44348 1.66255 1.22903 0.99451 1.18940 1.19264 0.93077 1.07072 0.89759 1.25247 0.97901 0.96353 0.98176 1.69849 1.32729 1.22266 1.30577 0.86958 0.85759 0.75458 0.80653 1.21781 1.23346 1.19498 1.21323 0.96645 0.91838 0.90080 1.22034 1.01532 0.96728 0.95819 0.90810 0.91784 0.89518 0.86839 0.86188 0.86168 0.85425 0.91379 0.91793 0.93043 0.96230 0.92014 0.92913 0.95935 0.91210 0.93183 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.09 36.01 0.36 -0.48 16 2 C 0.06 0.78 7.08 -81.77 -0.58 0.20 16 3 N -0.60 -6.84 6.07 -6.95 -0.04 -6.89 16 4 H 0.41 3.30 8.96 -40.82 -0.37 2.94 16 5 C 0.09 1.28 7.28 -83.99 -0.61 0.67 16 6 C -0.14 -1.66 10.08 -39.43 -0.40 -2.06 16 7 C -0.10 -1.19 10.01 -39.54 -0.40 -1.59 16 8 C -0.15 -2.04 9.97 -39.95 -0.40 -2.44 16 9 C -0.06 -0.94 9.23 -39.65 -0.37 -1.30 16 10 C -0.09 -1.44 6.12 -105.14 -0.64 -2.09 16 11 C -0.14 -2.14 4.93 -102.71 -0.51 -2.65 16 12 C -0.01 -0.11 2.46 -91.73 -0.23 -0.33 16 13 C -0.12 -2.12 5.27 -26.61 -0.14 -2.26 16 14 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 15 N -0.61 -14.60 2.78 -172.32 -0.48 -15.08 16 16 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 17 H 0.08 2.54 8.05 -52.49 -0.42 2.12 16 18 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 19 N -0.91 -28.32 13.97 55.49 0.78 -27.55 16 20 Si 0.88 22.77 24.36 -169.99 -4.14 18.63 16 21 H -0.29 -7.28 6.70 56.52 0.38 -6.90 16 22 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 23 H -0.27 -6.81 6.49 56.52 0.37 -6.45 16 24 C 0.13 2.83 4.19 -3.71 -0.02 2.81 16 25 C -0.12 -2.28 5.27 -26.61 -0.14 -2.42 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.82 6.92 -51.93 -0.36 0.46 16 29 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 31 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 32 H 0.13 2.10 6.47 -52.48 -0.34 1.76 16 33 H 0.07 1.05 6.64 -51.93 -0.34 0.71 16 34 H 0.06 1.18 6.85 -51.93 -0.36 0.82 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.02 0.50 7.02 -51.93 -0.36 0.13 16 40 H 0.07 1.72 4.49 -51.93 -0.23 1.48 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.31 6.90 -51.92 -0.36 0.95 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -32.47 324.65 -9.45 -41.92 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.13 Total: 1.90 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -4.32 Total: -17.82 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.25 Total: -49.51 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.47 -9.45 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048599392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.479 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds