Wall clock time and date at job start Tue Mar 31 2020 02:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 116.99605 * 2 1 4 4 O 1.20825 * 120.00425 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00117 * 180.02562 * 3 2 1 6 6 C 1.53118 * 109.52588 * 179.97438 * 5 3 2 7 7 C 1.53036 * 109.28068 * 177.61923 * 6 5 3 8 8 N 1.46843 * 109.52229 * 300.82162 * 7 6 5 9 9 C 1.46902 * 110.99818 * 185.83572 * 8 7 6 10 10 C 1.50702 * 109.47027 * 169.99758 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72353 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50694 * 109.47550 * 180.02562 * 13 12 10 15 15 H 1.08008 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00446 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99703 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00230 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47041 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46896 * 120.00102 * 18 16 14 21 21 H 1.48504 * 109.47040 * 240.00259 * 18 16 14 22 22 C 1.46848 * 111.20193 * 61.74013 * 8 7 6 23 23 C 1.53031 * 109.52183 * 298.25870 * 22 8 7 24 24 H 1.09008 * 109.46567 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47318 * 299.99216 * 1 2 3 26 26 H 1.08995 * 109.47310 * 60.00050 * 1 2 3 27 27 H 1.08994 * 109.52671 * 59.86718 * 5 3 2 28 28 H 1.09001 * 109.50142 * 57.67724 * 6 5 3 29 29 H 1.08995 * 109.50409 * 297.56346 * 6 5 3 30 30 H 1.08996 * 109.46465 * 180.80442 * 7 6 5 31 31 H 1.09004 * 109.45131 * 60.83038 * 7 6 5 32 32 H 1.09004 * 109.47131 * 50.00001 * 9 8 7 33 33 H 1.08994 * 109.47471 * 289.99751 * 9 8 7 34 34 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 35 35 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 36 36 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 37 37 H 0.97000 * 119.99614 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.45649 * 58.27112 * 22 8 7 39 39 H 1.08995 * 109.46466 * 178.24178 * 22 8 7 40 40 H 1.09001 * 109.50516 * 299.23843 * 23 22 8 41 41 H 1.09000 * 109.50603 * 179.12077 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0017 2.7429 -0.0011 7 6 5.5291 2.8170 0.0583 8 7 6.0059 2.1468 1.2748 9 6 7.4560 2.3179 1.4360 10 6 7.8696 1.8366 2.8029 11 8 7.0384 1.3941 3.5673 12 7 9.1642 1.8921 3.1737 13 6 9.5673 1.4186 4.5002 14 6 11.0555 1.5896 4.6639 15 1 11.6425 2.0094 3.8602 16 6 11.6678 1.2111 5.8398 17 7 10.9530 0.7004 6.8185 18 14 13.5125 1.4237 6.0429 19 1 14.0817 2.0164 4.8060 20 1 13.7834 2.3237 7.1926 21 1 14.1389 0.1004 6.2919 22 6 5.6405 0.7245 1.2755 23 6 4.1165 0.5881 1.2525 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.9567 0.7793 -0.8893 28 1 3.5788 3.2482 0.8672 29 1 3.6490 3.2268 -0.9119 30 1 5.8418 3.8610 0.0725 31 1 5.9508 2.3234 -0.8173 32 1 7.7116 3.3722 1.3294 33 1 7.9772 1.7388 0.6739 34 1 9.8291 2.2457 2.5623 35 1 9.0491 1.9968 5.2652 36 1 9.3086 0.3648 4.6038 37 1 11.3838 0.4337 7.6457 38 1 6.0619 0.2410 0.3942 39 1 6.0342 0.2489 2.1737 40 1 3.6954 1.0595 2.1405 41 1 3.8458 -0.4677 1.2373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049801028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:46 Heat of formation + Delta-G solvation = -151.472803 kcal Electronic energy + Delta-G solvation = -22316.833766 eV Core-core repulsion = 18809.453630 eV Total energy + Delta-G solvation = -3507.380136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.78434 -40.74646 -39.17621 -37.54986 -36.08684 -34.73884 -34.29245 -31.82970 -30.27514 -29.03552 -27.87605 -25.45435 -24.16644 -24.10353 -22.18273 -21.28839 -20.69283 -18.90710 -18.62244 -17.87334 -17.49573 -17.42979 -17.14013 -16.51358 -16.43336 -15.79979 -15.57982 -15.16214 -14.98327 -14.59643 -14.40390 -14.14446 -14.09091 -13.85917 -13.77057 -13.17029 -12.98634 -12.86440 -12.81264 -12.68454 -12.41983 -12.21107 -12.16855 -11.85252 -11.71555 -11.52058 -11.42986 -11.33895 -10.79649 -10.55196 -9.75913 -9.18975 -8.27932 -6.44192 1.10598 1.44127 1.45203 1.58623 1.73643 1.86261 2.30110 2.49448 3.07134 3.09069 3.52477 3.71955 3.81499 4.01399 4.14710 4.23286 4.29033 4.30526 4.35656 4.38250 4.47902 4.51447 4.65910 4.69091 4.77991 4.86292 4.98900 5.06815 5.14604 5.14912 5.27459 5.28404 5.38910 5.52507 5.74325 5.87722 6.01329 6.21705 6.67279 6.68129 7.00843 7.25791 7.59589 8.84514 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043057 B = 0.002689 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.148465 B =10412.029389 C =10828.145984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.468 3.532 4 O -0.537 6.537 5 C -0.075 4.075 6 C -0.096 4.096 7 C 0.061 3.939 8 N -0.549 5.549 9 C 0.051 3.949 10 C 0.492 3.508 11 O -0.585 6.585 12 N -0.711 5.711 13 C 0.268 3.732 14 C -0.553 4.553 15 H 0.085 0.915 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.985 3.015 19 H -0.252 1.252 20 H -0.280 1.280 21 H -0.279 1.279 22 C 0.055 3.945 23 C -0.097 4.097 24 H 0.130 0.870 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.135 0.865 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.408 0.592 35 H -0.017 1.017 36 H -0.014 1.014 37 H 0.268 0.732 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 0.825 -20.493 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.313 3.687 4 O -0.427 6.427 5 C -0.094 4.094 6 C -0.134 4.134 7 C -0.066 4.066 8 N -0.274 5.274 9 C -0.079 4.079 10 C 0.279 3.721 11 O -0.466 6.466 12 N -0.362 5.362 13 C 0.145 3.855 14 C -0.591 4.591 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.808 3.192 19 H -0.175 1.175 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.072 4.072 23 C -0.135 4.135 24 H 0.149 0.851 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.152 0.848 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.244 0.756 35 H 0.001 0.999 36 H 0.004 0.996 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.374 0.947 -19.382 24.149 hybrid contribution 0.949 -0.256 0.150 0.994 sum -13.425 0.691 -19.232 23.465 Atomic orbital electron populations 1.23540 0.74994 1.05662 1.02424 1.86516 1.24880 1.32974 1.83560 1.24144 0.92609 0.81082 0.70907 1.90645 1.67951 1.37339 1.46729 1.21245 0.85742 1.00059 1.02372 1.21472 0.95406 0.93149 1.03383 1.22176 0.94117 1.00436 0.89833 1.61463 1.12185 1.14278 1.39506 1.21921 0.89340 1.04489 0.92176 1.21450 0.81951 0.78250 0.90434 1.90619 1.52003 1.47947 1.56020 1.46190 1.08452 1.63390 1.18143 1.18479 0.94776 0.92297 0.79912 1.21669 0.92349 1.43226 1.01837 0.89708 1.26085 1.04569 0.94082 0.95065 1.70152 1.38419 1.42473 1.06078 0.85113 0.77434 0.77879 0.78793 1.17493 1.20619 1.20499 1.22133 0.95372 0.88245 1.01488 1.21451 0.94982 1.01257 0.95770 0.85147 0.92491 0.91584 0.84752 0.92511 0.89074 0.88607 0.92025 0.85371 0.89146 0.75621 0.99859 0.99591 0.92323 0.92760 0.91726 0.93014 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -7.08 10.50 -51.35 -0.54 -7.62 16 3 C 0.47 10.32 7.26 71.24 0.52 10.84 16 4 O -0.54 -14.73 15.73 21.97 0.35 -14.38 16 5 C -0.08 -1.39 2.69 -11.46 -0.03 -1.42 16 6 C -0.10 -1.80 4.68 30.65 0.14 -1.65 16 7 C 0.06 1.04 5.46 86.33 0.47 1.51 16 8 N -0.55 -13.89 4.40 -900.94 -3.96 -17.85 16 9 C 0.05 1.27 5.45 85.56 0.47 1.74 16 10 C 0.49 19.05 7.50 87.66 0.66 19.71 16 11 O -0.59 -28.59 14.33 -3.04 -0.04 -28.64 16 12 N -0.71 -29.23 5.55 -466.79 -2.59 -31.82 16 13 C 0.27 14.68 5.43 85.63 0.46 15.14 16 14 C -0.55 -29.86 9.28 25.60 0.24 -29.62 16 15 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 16 C 0.00 0.07 5.46 84.65 0.46 0.53 16 17 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 18 Si 0.98 42.13 29.54 68.60 2.03 44.16 16 19 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.06 1.41 5.11 86.32 0.44 1.85 16 23 C -0.10 -2.20 5.31 30.65 0.16 -2.03 16 24 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 26 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 27 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.37 8.04 -2.39 -0.02 1.35 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.40 8.01 -2.39 -0.02 1.38 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.13 2.49 7.99 -2.38 -0.02 2.47 16 33 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 34 H 0.41 13.52 8.32 -92.71 -0.77 12.75 16 35 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 36 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 2.22 5.78 -2.39 -0.01 2.21 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -77.28 340.55 0.96 -76.31 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.25 Total: 17.84 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 5.19 Total: 18.17 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -6.27 Total: -105.84 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -0.24 Total: -50.63 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -77.28 0.96 -76.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049801028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.160 kcal (2) G-P(sol) polarization free energy of solvation -77.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds