Wall clock time and date at job start Tue Mar 31 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00257 * 2 1 4 4 O 1.20825 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00023 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.46800 * 186.62457 * 5 3 2 7 7 H 1.09004 * 109.45332 * 304.32470 * 6 5 3 8 8 C 1.53041 * 109.46366 * 64.29995 * 6 5 3 9 9 C 1.53114 * 109.28040 * 179.19718 * 8 6 5 10 10 C 1.53127 * 109.15740 * 302.34370 * 9 8 6 11 11 C 1.53040 * 109.27803 * 57.65700 * 10 9 8 12 12 N 1.46843 * 109.46116 * 184.35089 * 6 5 3 13 13 C 1.46904 * 111.00174 * 54.14745 * 12 6 5 14 14 C 1.50695 * 109.47354 * 194.40645 * 13 12 6 15 15 O 1.21301 * 120.00048 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00478 * 179.97438 * 14 13 12 17 17 C 1.37091 * 120.00556 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99871 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00398 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00341 * 180.27479 * 19 17 16 21 21 Si 1.86806 * 119.99644 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47061 * 90.00172 * 21 19 17 23 23 H 1.48500 * 109.46913 * 209.99507 * 21 19 17 24 24 H 1.48493 * 109.47277 * 329.99711 * 21 19 17 25 25 H 1.08998 * 109.46954 * 60.00312 * 1 2 3 26 26 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47369 * 300.00270 * 1 2 3 28 28 H 1.08998 * 109.47471 * 66.62684 * 5 3 2 29 29 H 1.09000 * 109.46938 * 306.61983 * 5 3 2 30 30 H 1.09000 * 109.50278 * 59.24658 * 8 6 5 31 31 H 1.09003 * 109.53517 * 299.15860 * 8 6 5 32 32 H 1.08998 * 109.52464 * 182.44028 * 9 8 6 33 33 H 1.09004 * 109.52288 * 62.24754 * 9 8 6 34 34 H 1.08991 * 109.50387 * 297.71450 * 10 9 8 35 35 H 1.08996 * 109.49799 * 177.59503 * 10 9 8 36 36 H 1.08996 * 109.45790 * 180.80427 * 11 10 9 37 37 H 1.09001 * 109.45540 * 60.82865 * 11 10 9 38 38 H 1.09004 * 109.47228 * 74.40463 * 13 12 6 39 39 H 1.09000 * 109.46659 * 314.40573 * 13 12 6 40 40 H 0.97003 * 119.99439 * 0.02562 * 16 14 13 41 41 H 0.96995 * 119.99797 * 179.72808 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0007 2.7324 0.1660 7 1 3.5426 3.3393 -0.6151 8 6 3.5538 3.2442 1.5373 9 6 4.0080 4.6965 1.7075 10 6 5.5290 4.7696 1.5459 11 6 5.9186 4.2136 0.1743 12 7 5.4626 2.8223 0.0612 13 6 5.9395 2.2119 -1.1870 14 6 7.4295 2.0013 -1.1061 15 8 8.0347 2.3272 -0.1066 16 7 8.0896 1.4500 -2.1437 17 6 9.4450 1.2580 -2.0698 18 1 9.9838 1.5481 -1.1799 19 6 10.1256 0.6901 -3.1398 20 7 11.4241 0.5010 -3.0669 21 14 9.1938 0.1889 -4.6793 22 1 9.1575 1.3296 -5.6293 23 1 9.8767 -0.9651 -5.3175 24 1 7.8068 -0.1964 -4.3150 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.9502 0.8869 -0.9441 29 1 3.9615 0.6814 0.8240 30 1 4.0005 2.6291 2.3185 31 1 2.4675 3.1918 1.6096 32 1 3.7297 5.0512 2.6999 33 1 3.5309 5.3185 0.9502 34 1 6.0068 4.1786 2.3271 35 1 5.8536 5.8071 1.6236 36 1 7.0021 4.2511 0.0617 37 1 5.4513 4.8136 -0.6067 38 1 5.7107 2.8711 -2.0245 39 1 5.4444 1.2521 -1.3344 40 1 7.6056 1.1891 -2.9428 41 1 11.8985 0.1009 -3.8123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050052691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:54 Heat of formation + Delta-G solvation = -113.473388 kcal Electronic energy + Delta-G solvation = -23156.605751 eV Core-core repulsion = 19650.873393 eV Total energy + Delta-G solvation = -3505.732358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.84416 -39.35572 -37.81056 -36.61180 -34.04164 -33.49242 -32.43059 -31.63047 -28.92535 -27.71178 -26.92198 -24.50041 -22.98879 -22.33680 -20.57585 -19.59733 -19.30867 -18.26060 -17.87492 -16.78572 -16.74002 -15.98987 -15.48092 -14.94346 -14.80806 -14.54863 -14.26466 -13.92908 -13.45928 -13.39008 -13.20233 -13.02443 -12.80380 -12.46168 -12.40730 -12.17430 -12.01958 -11.72976 -11.49510 -11.16606 -11.05814 -10.92252 -10.70434 -10.60228 -10.56482 -10.21257 -10.09097 -9.95581 -9.51606 -8.55788 -8.16277 -7.93924 -6.29595 -3.80847 2.02385 2.48328 3.03077 3.07373 3.15837 3.75028 3.90335 4.11402 4.50271 4.66618 4.71129 4.84213 4.87079 4.91853 5.05038 5.17384 5.21747 5.25941 5.26589 5.32266 5.52325 5.61501 5.61796 5.70917 5.82609 5.87146 5.94618 6.03125 6.04996 6.07660 6.19834 6.28845 6.45080 6.55025 7.19821 7.32134 7.57037 7.60507 8.16327 8.62250 8.97263 9.44324 9.85851 10.83644 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016721 B = 0.004536 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.156869 B = 6170.739760 C = 7523.384481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.466 3.534 4 O -0.506 6.506 5 C -0.119 4.119 6 C 0.098 3.902 7 H 0.050 0.950 8 C -0.114 4.114 9 C -0.118 4.118 10 C -0.115 4.115 11 C 0.059 3.941 12 N -0.508 5.508 13 C 0.032 3.968 14 C 0.454 3.546 15 O -0.556 6.556 16 N -0.593 5.593 17 C -0.303 4.303 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.882 5.882 21 Si 0.879 3.121 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.024 0.976 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.369 0.631 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.078 1.814 4.029 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.394 6.394 5 C -0.157 4.157 6 C -0.010 4.010 7 H 0.068 0.932 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.153 4.153 11 C -0.068 4.068 12 N -0.233 5.233 13 C -0.099 4.099 14 C 0.240 3.760 15 O -0.437 6.437 16 N -0.233 5.233 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.523 5.523 21 Si 0.705 3.295 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.195 1.195 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.202 0.798 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.482 1.999 5.007 21.180 hybrid contribution -1.143 -0.101 -2.130 2.420 sum -21.626 1.898 2.877 21.899 Atomic orbital electron populations 1.23250 0.76470 1.03636 1.02480 1.86535 1.23349 1.33618 1.84129 1.23785 0.92171 0.81217 0.71962 1.90648 1.67320 1.36178 1.45238 1.21656 0.86890 1.00290 1.06824 1.21369 0.88312 0.92752 0.98606 0.93236 1.21707 1.00867 0.96704 0.95927 1.21553 0.96380 0.96357 1.01242 1.21572 0.95279 1.00400 0.98007 1.22179 1.02534 0.86109 0.96005 1.61476 1.08077 1.18824 1.34922 1.22066 0.96243 1.00325 0.91285 1.19608 0.87859 0.83852 0.84702 1.90551 1.68586 1.53518 1.31045 1.42217 1.08852 1.56743 1.15468 1.19421 0.80743 1.38500 1.04518 0.86262 1.25024 0.95533 0.97570 0.98010 1.69621 1.06869 1.43481 1.32297 0.86692 0.79754 0.79306 0.83737 1.19711 1.20210 1.19501 0.91962 0.88156 0.91916 0.86968 0.86451 0.91173 0.90781 0.92066 0.92494 0.90753 0.91837 0.88305 0.95820 0.93171 0.88968 0.79805 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.82 10.57 -39.26 -0.41 -4.23 16 3 C 0.47 5.45 7.56 36.00 0.27 5.72 16 4 O -0.51 -6.89 13.95 -18.75 -0.26 -7.15 16 5 C -0.12 -1.35 5.07 -27.88 -0.14 -1.49 16 6 C 0.10 1.28 1.56 -67.72 -0.11 1.17 16 7 H 0.05 0.68 7.88 -51.93 -0.41 0.27 16 8 C -0.11 -1.41 5.10 -26.65 -0.14 -1.54 16 9 C -0.12 -1.39 6.00 -26.61 -0.16 -1.55 16 10 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 11 C 0.06 0.93 5.11 -3.83 -0.02 0.91 16 12 N -0.51 -7.98 4.15 -228.11 -0.95 -8.93 16 13 C 0.03 0.52 5.25 -4.98 -0.03 0.50 16 14 C 0.45 10.08 7.46 -10.99 -0.08 10.00 16 15 O -0.56 -14.49 14.28 5.54 0.08 -14.41 16 16 N -0.59 -13.89 5.09 -10.97 -0.06 -13.94 16 17 C -0.30 -8.48 10.16 -14.94 -0.15 -8.63 16 18 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 21 Si 0.88 19.22 27.74 -169.99 -4.71 14.51 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.34 6.52 56.52 0.37 -4.98 16 25 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 28 H 0.11 1.17 5.79 -51.93 -0.30 0.87 16 29 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.91 6.16 -51.93 -0.32 0.59 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.87 6.19 -51.93 -0.32 1.54 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.09 1.28 5.37 -51.93 -0.28 1.00 16 40 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -32.85 328.21 -6.40 -39.25 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.07 Total: 9.10 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 0.26 Total: 5.75 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.23 Total: -47.78 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.60 Total: -25.79 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.85 -6.40 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050052691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.219 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds