Wall clock time and date at job start Tue Mar 31 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00257 * 2 1 4 4 O 1.20825 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00023 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.46800 * 186.62457 * 5 3 2 7 7 H 1.09004 * 109.45332 * 304.32470 * 6 5 3 8 8 C 1.53041 * 109.46366 * 64.29995 * 6 5 3 9 9 C 1.53114 * 109.28040 * 179.19718 * 8 6 5 10 10 C 1.53127 * 109.15740 * 302.34370 * 9 8 6 11 11 C 1.53040 * 109.27803 * 57.65700 * 10 9 8 12 12 N 1.46843 * 109.46116 * 184.35089 * 6 5 3 13 13 C 1.46904 * 111.00174 * 54.14745 * 12 6 5 14 14 C 1.50695 * 109.47354 * 194.40645 * 13 12 6 15 15 O 1.21301 * 120.00048 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00478 * 179.97438 * 14 13 12 17 17 C 1.37091 * 120.00556 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99871 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00398 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00341 * 180.27479 * 19 17 16 21 21 Si 1.86806 * 119.99644 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47061 * 90.00172 * 21 19 17 23 23 H 1.48500 * 109.46913 * 209.99507 * 21 19 17 24 24 H 1.48493 * 109.47277 * 329.99711 * 21 19 17 25 25 H 1.08998 * 109.46954 * 60.00312 * 1 2 3 26 26 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47369 * 300.00270 * 1 2 3 28 28 H 1.08998 * 109.47471 * 66.62684 * 5 3 2 29 29 H 1.09000 * 109.46938 * 306.61983 * 5 3 2 30 30 H 1.09000 * 109.50278 * 59.24658 * 8 6 5 31 31 H 1.09003 * 109.53517 * 299.15860 * 8 6 5 32 32 H 1.08998 * 109.52464 * 182.44028 * 9 8 6 33 33 H 1.09004 * 109.52288 * 62.24754 * 9 8 6 34 34 H 1.08991 * 109.50387 * 297.71450 * 10 9 8 35 35 H 1.08996 * 109.49799 * 177.59503 * 10 9 8 36 36 H 1.08996 * 109.45790 * 180.80427 * 11 10 9 37 37 H 1.09001 * 109.45540 * 60.82865 * 11 10 9 38 38 H 1.09004 * 109.47228 * 74.40463 * 13 12 6 39 39 H 1.09000 * 109.46659 * 314.40573 * 13 12 6 40 40 H 0.97003 * 119.99439 * 0.02562 * 16 14 13 41 41 H 0.96995 * 119.99797 * 179.72808 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0007 2.7324 0.1660 7 1 3.5426 3.3393 -0.6151 8 6 3.5538 3.2442 1.5373 9 6 4.0080 4.6965 1.7075 10 6 5.5290 4.7696 1.5459 11 6 5.9186 4.2136 0.1743 12 7 5.4626 2.8223 0.0612 13 6 5.9395 2.2119 -1.1870 14 6 7.4295 2.0013 -1.1061 15 8 8.0347 2.3272 -0.1066 16 7 8.0896 1.4500 -2.1437 17 6 9.4450 1.2580 -2.0698 18 1 9.9838 1.5481 -1.1799 19 6 10.1256 0.6901 -3.1398 20 7 11.4241 0.5010 -3.0669 21 14 9.1938 0.1889 -4.6793 22 1 9.1575 1.3296 -5.6293 23 1 9.8767 -0.9651 -5.3175 24 1 7.8068 -0.1964 -4.3150 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.9502 0.8869 -0.9441 29 1 3.9615 0.6814 0.8240 30 1 4.0005 2.6291 2.3185 31 1 2.4675 3.1918 1.6096 32 1 3.7297 5.0512 2.6999 33 1 3.5309 5.3185 0.9502 34 1 6.0068 4.1786 2.3271 35 1 5.8536 5.8071 1.6236 36 1 7.0021 4.2511 0.0617 37 1 5.4513 4.8136 -0.6067 38 1 5.7107 2.8711 -2.0245 39 1 5.4444 1.2521 -1.3344 40 1 7.6056 1.1891 -2.9428 41 1 11.8985 0.1009 -3.8123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050052691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:53 Heat of formation + Delta-G solvation = -137.464446 kcal Electronic energy + Delta-G solvation = -23157.646081 eV Core-core repulsion = 19650.873393 eV Total energy + Delta-G solvation = -3506.772688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75915 -40.68099 -39.35126 -37.49233 -35.97221 -34.65430 -33.68072 -33.53133 -29.81039 -29.09856 -27.77517 -26.27350 -24.18039 -23.39135 -21.56053 -21.17676 -20.64242 -20.13535 -18.78289 -17.75354 -17.59090 -17.47751 -16.90122 -16.56596 -16.17526 -15.55522 -15.44443 -15.20954 -14.89639 -14.73534 -14.41347 -14.29245 -13.98609 -13.78376 -13.70503 -13.44668 -13.04115 -12.90929 -12.82774 -12.49862 -12.37860 -12.04762 -11.95860 -11.77765 -11.69380 -11.59799 -11.44305 -11.21150 -11.13512 -10.32613 -10.19472 -9.21427 -8.37952 -5.98222 1.15709 1.32112 1.37508 1.46265 1.69547 2.00425 2.25557 2.61916 3.17994 3.23202 3.58561 3.73556 3.89466 4.01191 4.09871 4.23751 4.28308 4.32119 4.33147 4.36165 4.38765 4.51499 4.53834 4.62959 4.74067 4.84837 4.88830 4.95269 5.02664 5.07735 5.21128 5.31179 5.40546 5.50204 5.57037 5.93426 6.05231 6.18477 6.63852 6.72746 6.92852 7.44377 8.02222 8.79829 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016721 B = 0.004536 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.156869 B = 6170.739760 C = 7523.384481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.472 3.528 4 O -0.528 6.528 5 C -0.118 4.118 6 C 0.102 3.898 7 H 0.051 0.949 8 C -0.112 4.112 9 C -0.112 4.112 10 C -0.111 4.111 11 C 0.059 3.941 12 N -0.525 5.525 13 C 0.042 3.958 14 C 0.455 3.545 15 O -0.602 6.602 16 N -0.594 5.594 17 C -0.324 4.324 18 H 0.055 0.945 19 C -0.015 4.015 20 N -0.937 5.937 21 Si 0.962 3.038 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.229 1.229 25 H 0.063 0.937 26 H 0.128 0.872 27 H 0.063 0.937 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.389 0.611 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.677 1.154 2.425 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.316 3.684 4 O -0.418 6.418 5 C -0.156 4.156 6 C -0.006 4.006 7 H 0.069 0.931 8 C -0.149 4.149 9 C -0.150 4.150 10 C -0.148 4.148 11 C -0.069 4.069 12 N -0.250 5.250 13 C -0.089 4.089 14 C 0.242 3.758 15 O -0.485 6.485 16 N -0.236 5.236 17 C -0.454 4.454 18 H 0.074 0.926 19 C -0.213 4.213 20 N -0.578 5.578 21 Si 0.782 3.218 22 H -0.184 1.184 23 H -0.202 1.202 24 H -0.152 1.152 25 H 0.081 0.919 26 H 0.146 0.854 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.144 0.856 40 H 0.224 0.776 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.120 1.336 3.417 24.398 hybrid contribution -0.001 0.140 -1.486 1.492 sum -24.121 1.476 1.932 24.244 Atomic orbital electron populations 1.23536 0.74756 1.05581 1.02601 1.86518 1.25044 1.32888 1.83711 1.23709 0.92120 0.81223 0.71343 1.90643 1.67789 1.36902 1.46435 1.21625 0.87046 0.99144 1.07740 1.21370 0.86137 0.94084 0.98982 0.93135 1.21688 1.00926 0.96896 0.95436 1.21523 0.94714 0.96287 1.02431 1.21531 0.96621 1.00639 0.96045 1.22093 1.00139 0.86810 0.97830 1.61405 1.10041 1.18754 1.34790 1.22015 0.91367 1.02856 0.92646 1.20797 0.90364 0.81329 0.83292 1.90540 1.70446 1.54656 1.32875 1.42030 1.07167 1.57594 1.16800 1.18987 0.82995 1.40183 1.03196 0.92637 1.26080 0.96461 0.96654 1.02147 1.69806 1.09370 1.44526 1.34063 0.85404 0.79897 0.78990 0.77484 1.18391 1.20161 1.15182 0.91853 0.85387 0.91831 0.85572 0.86015 0.91640 0.90408 0.90459 0.91865 0.92521 0.90577 0.92393 0.94462 0.90532 0.85580 0.77605 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.37 -6.73 10.57 -51.43 -0.54 -7.27 16 3 C 0.47 9.76 7.56 71.23 0.54 10.30 16 4 O -0.53 -13.07 13.95 21.97 0.31 -12.76 16 5 C -0.12 -2.34 5.07 29.85 0.15 -2.19 16 6 C 0.10 2.41 1.56 44.94 0.07 2.48 16 7 H 0.05 1.22 7.88 -2.38 -0.02 1.20 16 8 C -0.11 -2.52 5.10 30.65 0.16 -2.37 16 9 C -0.11 -2.41 6.00 30.67 0.18 -2.23 16 10 C -0.11 -2.88 6.09 30.65 0.19 -2.69 16 11 C 0.06 1.82 5.11 86.33 0.44 2.26 16 12 N -0.52 -15.72 4.15 -875.61 -3.64 -19.35 16 13 C 0.04 1.27 5.25 85.55 0.45 1.72 16 14 C 0.45 20.18 7.46 87.66 0.65 20.84 16 15 O -0.60 -32.78 14.28 -3.09 -0.04 -32.82 16 16 N -0.59 -27.59 5.09 -306.99 -1.56 -29.15 16 17 C -0.32 -18.86 10.16 84.04 0.85 -18.01 16 18 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 19 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 20 N -0.94 -56.47 13.96 21.66 0.30 -56.16 16 21 Si 0.96 38.45 27.74 68.60 1.90 40.35 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 23 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 24 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 25 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 26 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 28 H 0.13 2.11 5.79 -2.39 -0.01 2.10 16 29 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.74 6.16 -2.39 -0.01 1.73 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 2.27 6.19 -2.39 -0.01 2.26 16 37 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 39 H 0.13 2.99 5.37 -2.39 -0.01 2.98 16 40 H 0.39 14.87 5.76 -92.71 -0.53 14.34 16 41 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.57 328.21 2.52 -74.04 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.45 Total: 31.82 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.35 Total: 11.31 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -4.90 Total: -104.67 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.28 Total: -52.85 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.35 kcal Total: -76.57 2.52 -74.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050052691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.420 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds