Wall clock time and date at job start Tue Mar 31 2020 02:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00254 * 2 1 4 4 C 1.53000 * 109.47502 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47192 * 64.99869 * 4 3 2 6 6 C 1.46766 * 124.34898 * 270.02565 * 5 4 3 7 7 C 1.54480 * 105.47221 * 162.98294 * 6 5 4 8 8 H 1.09001 * 111.00102 * 267.28603 * 7 6 5 9 9 C 1.50703 * 110.96872 * 143.53526 * 7 6 5 10 10 O 1.21278 * 119.99757 * 6.16661 * 9 7 6 11 11 N 1.34775 * 119.99978 * 186.16594 * 9 7 6 12 12 C 1.46502 * 119.99985 * 0.02562 * 11 9 7 13 13 C 1.46496 * 119.99830 * 179.97438 * 11 9 7 14 14 C 1.50698 * 109.47204 * 90.00214 * 13 11 9 15 15 H 1.07999 * 119.99663 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00215 * 179.97438 * 14 13 11 17 17 N 1.31517 * 119.99799 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00084 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47262 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47014 * 120.00249 * 18 16 14 21 21 H 1.48503 * 109.47380 * 240.00195 * 18 16 14 22 22 C 1.54627 * 101.76536 * 25.41761 * 7 6 5 23 23 C 1.34413 * 124.34944 * 90.02751 * 5 4 3 24 24 O 1.21279 * 124.94390 * 0.66828 * 23 5 4 25 25 H 1.09004 * 109.47303 * 59.99942 * 1 2 3 26 26 H 1.08994 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46977 * 300.00224 * 1 2 3 28 28 H 1.09004 * 109.47347 * 59.99619 * 3 2 1 29 29 H 1.09005 * 109.47091 * 299.99867 * 3 2 1 30 30 H 1.08996 * 109.46757 * 305.00218 * 4 3 2 31 31 H 1.08999 * 109.47254 * 185.00099 * 4 3 2 32 32 H 1.09003 * 110.24225 * 43.98865 * 6 5 4 33 33 H 1.08996 * 110.32077 * 282.02069 * 6 5 4 34 34 H 1.09007 * 109.47254 * 89.99824 * 12 11 9 35 35 H 1.09001 * 109.47060 * 209.99576 * 12 11 9 36 36 H 1.08998 * 109.47356 * 330.00198 * 12 11 9 37 37 H 1.09003 * 109.46950 * 210.00199 * 13 11 9 38 38 H 1.08995 * 109.47525 * 329.99752 * 13 11 9 39 39 H 0.97001 * 119.99676 * 180.02562 * 17 16 14 40 40 H 1.09004 * 110.48832 * 216.52571 * 22 7 6 41 41 H 1.09002 * 110.59848 * 93.93277 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1376 -0.8811 -1.4487 7 6 4.1795 -1.0873 -2.9791 8 1 3.1850 -1.2984 -3.3722 9 6 5.1464 -2.1824 -3.3494 10 8 5.6788 -2.8405 -2.4808 11 7 5.4194 -2.4304 -4.6457 12 6 4.7766 -1.6351 -5.6948 13 6 6.3597 -3.4945 -5.0056 14 6 5.6101 -4.7906 -5.1766 15 1 4.5402 -4.8187 -5.0321 16 6 6.2900 -5.9403 -5.5186 17 7 7.5928 -5.9059 -5.6951 18 14 5.3609 -7.5470 -5.7300 19 1 3.9153 -7.3199 -5.4770 20 1 5.5478 -8.0483 -7.1153 21 1 5.8809 -8.5500 -4.7662 22 6 4.6876 0.2885 -3.4688 23 6 4.2833 1.2460 -2.3696 24 8 4.2470 2.4534 -2.4788 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0889 32 1 3.2913 -1.4170 -1.0189 33 1 5.0687 -1.2224 -0.9964 34 1 5.3932 -0.7649 -5.9203 35 1 4.6628 -2.2423 -6.5928 36 1 3.7956 -1.3062 -5.3518 37 1 6.8590 -3.2375 -5.9398 38 1 7.1023 -3.6058 -4.2155 39 1 8.0711 -6.7147 -5.9360 40 1 4.2062 0.5607 -4.4081 41 1 5.7713 0.2776 -3.5858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074457546.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:37 Heat of formation + Delta-G solvation = -108.388205 kcal Electronic energy + Delta-G solvation = -23083.275768 eV Core-core repulsion = 19577.763920 eV Total energy + Delta-G solvation = -3505.511848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.73842 -38.83479 -38.00581 -36.12924 -34.91328 -33.48669 -32.49072 -29.59528 -27.76551 -27.59056 -26.53759 -25.87247 -23.93701 -23.01502 -21.72124 -19.48205 -18.48756 -17.27539 -16.91955 -16.68399 -16.49364 -15.88862 -15.58757 -15.35043 -15.24886 -14.53214 -14.51630 -14.10108 -13.69181 -13.44469 -13.17671 -12.78050 -12.50624 -12.31833 -12.27254 -12.15428 -12.03776 -11.84405 -11.48650 -11.29392 -11.22984 -11.14743 -10.87135 -10.60812 -10.18524 -10.03803 -9.82339 -9.64144 -8.99651 -8.71952 -8.46084 -7.70758 -6.06795 -4.11652 2.54619 2.90525 3.26944 3.28621 3.36596 3.40578 3.52233 3.82013 4.34151 4.42161 4.50609 4.77626 4.85343 4.93045 4.99365 5.03629 5.10937 5.14086 5.26187 5.28990 5.35699 5.43932 5.50494 5.59223 5.64183 5.68368 5.87114 5.90388 6.07098 6.19428 6.46178 6.84126 6.99843 7.08356 7.39906 7.48181 7.89308 8.12945 8.19977 8.33501 8.85069 9.00660 9.53649 11.01364 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022367 B = 0.003956 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.564043 B = 7076.587653 C = 7747.842553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.043 3.957 4 C 0.129 3.871 5 N -0.612 5.612 6 C 0.121 3.879 7 C -0.122 4.122 8 H 0.111 0.889 9 C 0.516 3.484 10 O -0.536 6.536 11 N -0.597 5.597 12 C 0.080 3.920 13 C 0.244 3.756 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.144 4.144 23 C 0.520 3.480 24 O -0.541 6.541 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.263 0.737 40 H 0.108 0.892 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.773 14.175 7.971 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.035 4.035 4 C 0.007 3.993 5 N -0.345 5.345 6 C -0.002 4.002 7 C -0.144 4.144 8 H 0.129 0.871 9 C 0.301 3.699 10 O -0.413 6.413 11 N -0.328 5.328 12 C -0.064 4.064 13 C 0.125 3.875 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.184 4.184 23 C 0.308 3.692 24 O -0.419 6.419 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.242 14.188 8.377 19.946 hybrid contribution -0.831 -0.789 -0.275 1.179 sum -12.073 13.399 8.102 19.772 Atomic orbital electron populations 1.22733 0.81074 1.02869 0.99757 1.87917 1.19664 1.27458 1.95382 1.23051 0.94398 0.85293 1.00738 1.21410 0.91994 0.99783 0.86159 1.48249 1.66143 1.08280 1.11833 1.22028 1.04221 0.79371 0.94562 1.22244 1.01098 0.94348 0.96703 0.87075 1.19783 0.82683 0.84086 0.83331 1.90684 1.52287 1.50242 1.48123 1.48109 1.44826 1.35477 1.04414 1.21761 0.96496 0.95469 0.92681 1.19329 0.87978 0.83534 0.96617 1.21461 0.94493 0.93377 1.47230 0.92355 1.24938 0.94876 0.99051 0.95247 1.69942 1.06891 1.28786 1.47710 0.86440 0.79969 0.83381 0.77601 1.19801 1.20981 1.20858 1.22418 1.04325 0.92896 0.98773 1.20910 0.75797 0.88101 0.84375 1.90695 1.54597 1.13632 1.82971 0.94198 0.89498 0.94237 0.92301 0.92860 0.89203 0.88444 0.89066 0.89170 0.93422 0.90653 0.92358 0.94864 0.93729 0.92740 0.87342 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.11 9.88 -35.23 -0.35 -4.46 16 3 C 0.04 0.40 6.28 37.16 0.23 0.63 16 4 C 0.13 1.29 6.32 -4.04 -0.03 1.26 16 5 N -0.61 -7.66 2.88 -172.41 -0.50 -8.16 16 6 C 0.12 1.63 6.59 -3.12 -0.02 1.60 16 7 C -0.12 -1.70 2.57 -90.14 -0.23 -1.94 16 8 H 0.11 1.38 7.56 -51.93 -0.39 0.99 16 9 C 0.52 9.98 6.99 -10.98 -0.08 9.91 16 10 O -0.54 -12.66 15.15 5.56 0.08 -12.57 16 11 N -0.60 -11.95 2.86 -182.96 -0.52 -12.47 16 12 C 0.08 1.18 8.98 59.85 0.54 1.72 16 13 C 0.24 6.20 5.16 -5.20 -0.03 6.17 16 14 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 18 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.14 -1.81 5.04 -26.74 -0.13 -1.95 16 23 C 0.52 7.29 8.02 -10.86 -0.09 7.20 16 24 O -0.54 -9.04 17.59 5.56 0.10 -8.94 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.92 7.92 -51.93 -0.41 0.51 16 32 H 0.09 1.20 7.44 -51.93 -0.39 0.81 16 33 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 34 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 35 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.06 0.70 5.96 -51.93 -0.31 0.39 16 37 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 38 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 40 H 0.11 1.16 7.10 -51.93 -0.37 0.79 16 41 H 0.11 1.43 7.89 -51.93 -0.41 1.02 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -34.34 341.68 -5.82 -40.16 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.36 Total: -2.40 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 0.86 Total: 12.67 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.28 Total: -46.11 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.17 Total: -25.98 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.34 -5.82 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074457546.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.232 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds