Wall clock time and date at job start Tue Mar 31 2020 02:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00254 * 2 1 4 4 C 1.53000 * 109.47502 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47192 * 64.99869 * 4 3 2 6 6 C 1.46766 * 124.34898 * 270.02565 * 5 4 3 7 7 C 1.54480 * 105.47221 * 162.98294 * 6 5 4 8 8 H 1.09001 * 111.00102 * 267.28603 * 7 6 5 9 9 C 1.50703 * 110.96872 * 143.53526 * 7 6 5 10 10 O 1.21278 * 119.99757 * 6.16661 * 9 7 6 11 11 N 1.34775 * 119.99978 * 186.16594 * 9 7 6 12 12 C 1.46502 * 119.99985 * 0.02562 * 11 9 7 13 13 C 1.46496 * 119.99830 * 179.97438 * 11 9 7 14 14 C 1.50698 * 109.47204 * 90.00214 * 13 11 9 15 15 H 1.07999 * 119.99663 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00215 * 179.97438 * 14 13 11 17 17 N 1.31517 * 119.99799 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00084 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47262 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47014 * 120.00249 * 18 16 14 21 21 H 1.48503 * 109.47380 * 240.00195 * 18 16 14 22 22 C 1.54627 * 101.76536 * 25.41761 * 7 6 5 23 23 C 1.34413 * 124.34944 * 90.02751 * 5 4 3 24 24 O 1.21279 * 124.94390 * 0.66828 * 23 5 4 25 25 H 1.09004 * 109.47303 * 59.99942 * 1 2 3 26 26 H 1.08994 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46977 * 300.00224 * 1 2 3 28 28 H 1.09004 * 109.47347 * 59.99619 * 3 2 1 29 29 H 1.09005 * 109.47091 * 299.99867 * 3 2 1 30 30 H 1.08996 * 109.46757 * 305.00218 * 4 3 2 31 31 H 1.08999 * 109.47254 * 185.00099 * 4 3 2 32 32 H 1.09003 * 110.24225 * 43.98865 * 6 5 4 33 33 H 1.08996 * 110.32077 * 282.02069 * 6 5 4 34 34 H 1.09007 * 109.47254 * 89.99824 * 12 11 9 35 35 H 1.09001 * 109.47060 * 209.99576 * 12 11 9 36 36 H 1.08998 * 109.47356 * 330.00198 * 12 11 9 37 37 H 1.09003 * 109.46950 * 210.00199 * 13 11 9 38 38 H 1.08995 * 109.47525 * 329.99752 * 13 11 9 39 39 H 0.97001 * 119.99676 * 180.02562 * 17 16 14 40 40 H 1.09004 * 110.48832 * 216.52571 * 22 7 6 41 41 H 1.09002 * 110.59848 * 93.93277 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1376 -0.8811 -1.4487 7 6 4.1795 -1.0873 -2.9791 8 1 3.1850 -1.2984 -3.3722 9 6 5.1464 -2.1824 -3.3494 10 8 5.6788 -2.8405 -2.4808 11 7 5.4194 -2.4304 -4.6457 12 6 4.7766 -1.6351 -5.6948 13 6 6.3597 -3.4945 -5.0056 14 6 5.6101 -4.7906 -5.1766 15 1 4.5402 -4.8187 -5.0321 16 6 6.2900 -5.9403 -5.5186 17 7 7.5928 -5.9059 -5.6951 18 14 5.3609 -7.5470 -5.7300 19 1 3.9153 -7.3199 -5.4770 20 1 5.5478 -8.0483 -7.1153 21 1 5.8809 -8.5500 -4.7662 22 6 4.6876 0.2885 -3.4688 23 6 4.2833 1.2460 -2.3696 24 8 4.2470 2.4534 -2.4788 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0889 32 1 3.2913 -1.4170 -1.0189 33 1 5.0687 -1.2224 -0.9964 34 1 5.3932 -0.7649 -5.9203 35 1 4.6628 -2.2423 -6.5928 36 1 3.7956 -1.3062 -5.3518 37 1 6.8590 -3.2375 -5.9398 38 1 7.1023 -3.6058 -4.2155 39 1 8.0711 -6.7147 -5.9360 40 1 4.2062 0.5607 -4.4081 41 1 5.7713 0.2776 -3.5858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074457546.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:36 Heat of formation + Delta-G solvation = -132.798709 kcal Electronic energy + Delta-G solvation = -23084.334287 eV Core-core repulsion = 19577.763920 eV Total energy + Delta-G solvation = -3506.570367 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90965 -40.26548 -38.77787 -37.30859 -36.59022 -34.90180 -34.14174 -30.69881 -29.42292 -28.73155 -27.37082 -27.16110 -25.52882 -24.01821 -23.15868 -20.52980 -19.93809 -18.73294 -18.28783 -18.03773 -17.44236 -17.20329 -16.73146 -16.63196 -16.22178 -16.11098 -15.82434 -15.38956 -14.77612 -14.69291 -14.42671 -14.12902 -13.88575 -13.65251 -13.43931 -13.32217 -13.12343 -12.98120 -12.87635 -12.77944 -12.49612 -12.41468 -12.35632 -12.16090 -12.03569 -11.64935 -11.10981 -10.63885 -10.62298 -10.53397 -9.76407 -9.40449 -8.20048 -6.34410 1.39224 1.41396 1.46466 1.52952 1.76295 1.91507 2.31248 2.45556 2.85508 3.10092 3.20922 3.38163 3.74224 3.88024 4.04435 4.12448 4.18682 4.34444 4.46575 4.51186 4.53474 4.57366 4.58861 4.64815 4.75117 4.77754 4.83068 4.89957 4.94832 5.02053 5.07674 5.26846 5.48088 5.58579 5.85143 5.99682 6.08480 6.22814 6.71402 6.79238 7.06354 7.29719 7.45890 8.87187 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022367 B = 0.003956 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.564043 B = 7076.587653 C = 7747.842553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.606 5.606 6 C 0.128 3.872 7 C -0.105 4.105 8 H 0.139 0.861 9 C 0.511 3.489 10 O -0.588 6.588 11 N -0.603 5.603 12 C 0.073 3.927 13 C 0.258 3.742 14 C -0.541 4.541 15 H 0.056 0.944 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.967 3.033 19 H -0.265 1.265 20 H -0.271 1.271 21 H -0.283 1.283 22 C -0.137 4.137 23 C 0.519 3.481 24 O -0.569 6.569 25 H 0.042 0.958 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.025 0.975 38 H 0.000 1.000 39 H 0.266 0.734 40 H 0.137 0.863 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.058 14.826 7.809 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.030 4.030 4 C 0.000 4.000 5 N -0.339 5.339 6 C 0.005 3.995 7 C -0.127 4.127 8 H 0.157 0.843 9 C 0.298 3.702 10 O -0.469 6.469 11 N -0.333 5.333 12 C -0.069 4.069 13 C 0.137 3.863 14 C -0.579 4.579 15 H 0.074 0.926 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.791 3.209 19 H -0.189 1.189 20 H -0.197 1.197 21 H -0.209 1.209 22 C -0.177 4.177 23 C 0.308 3.692 24 O -0.450 6.450 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.043 0.957 38 H 0.018 0.982 39 H 0.075 0.925 40 H 0.155 0.845 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.564 14.871 8.207 21.737 hybrid contribution -0.099 -0.958 -0.179 0.980 sum -13.663 13.913 8.028 21.088 Atomic orbital electron populations 1.22868 0.79785 1.03533 1.00647 1.87876 1.21170 1.28159 1.95558 1.23014 0.93507 0.85048 1.01422 1.21664 0.92901 1.00116 0.85366 1.48323 1.65432 1.07688 1.12431 1.21868 1.03518 0.79970 0.94163 1.22113 1.00505 0.92868 0.97218 0.84312 1.20636 0.82604 0.84545 0.82371 1.90658 1.54316 1.52440 1.49513 1.48091 1.44266 1.34823 1.06162 1.22079 0.98448 0.95372 0.90988 1.18787 0.88161 0.84924 0.94449 1.21753 0.94493 0.94625 1.47056 0.92577 1.25843 0.95734 1.02738 0.94842 1.70059 1.08458 1.29909 1.48490 0.85378 0.78835 0.78711 0.77937 1.18942 1.19667 1.20905 1.22436 1.04275 0.91288 0.99676 1.21035 0.75482 0.87799 0.84911 1.90686 1.56040 1.14731 1.83498 0.93895 0.89027 0.92751 0.89856 0.93859 0.88071 0.87898 0.88419 0.91131 0.90802 0.91423 0.88690 0.95724 0.98179 0.92476 0.84504 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -7.86 9.88 -148.98 -1.47 -9.33 16 3 C 0.05 0.78 6.28 71.98 0.45 1.24 16 4 C 0.12 2.22 6.32 86.38 0.55 2.76 16 5 N -0.61 -14.23 2.88 -817.99 -2.36 -16.59 16 6 C 0.13 3.29 6.59 86.83 0.57 3.87 16 7 C -0.11 -2.74 2.57 -10.48 -0.03 -2.77 16 8 H 0.14 2.92 7.56 -2.39 -0.02 2.90 16 9 C 0.51 19.65 6.99 87.66 0.61 20.27 16 10 O -0.59 -28.67 15.15 -3.02 -0.05 -28.71 16 11 N -0.60 -23.96 2.86 -851.14 -2.43 -26.40 16 12 C 0.07 1.99 8.98 127.77 1.15 3.13 16 13 C 0.26 13.49 5.16 85.63 0.44 13.93 16 14 C -0.54 -30.36 9.39 25.60 0.24 -30.12 16 15 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 18 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 C -0.14 -3.11 5.04 30.59 0.15 -2.96 16 23 C 0.52 13.58 8.02 87.90 0.71 14.28 16 24 O -0.57 -18.12 17.59 -3.03 -0.05 -18.17 16 25 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 1.79 7.92 -2.39 -0.02 1.77 16 32 H 0.10 2.42 7.44 -2.39 -0.02 2.41 16 33 H 0.07 2.14 7.06 -2.39 -0.02 2.12 16 34 H 0.07 1.64 7.90 -2.38 -0.02 1.62 16 35 H 0.07 1.96 8.07 -2.39 -0.02 1.95 16 36 H 0.09 1.88 5.96 -2.39 -0.01 1.87 16 37 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 38 H 0.00 0.00 7.42 -2.39 -0.02 -0.01 16 39 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.14 2.36 7.10 -2.38 -0.02 2.34 16 41 H 0.10 2.55 7.89 -2.39 -0.02 2.53 16 Total: -1.00 -76.34 341.68 3.52 -72.82 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.01 Total: 9.32 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: 6.56 Total: 26.13 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -4.50 Total: -98.22 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -1.57 Total: -56.22 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -76.34 3.52 -72.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074457546.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.980 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds