Wall clock time and date at job start Tue Mar 31 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46493 * 119.99898 * 2 1 4 4 C 1.50706 * 109.47567 * 270.00190 * 3 2 1 5 5 H 1.08000 * 119.99524 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00150 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99809 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99916 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47160 * 89.99803 * 8 6 4 10 10 H 1.48500 * 109.46559 * 209.99872 * 8 6 4 11 11 H 1.48499 * 109.47053 * 329.99483 * 8 6 4 12 12 C 1.34770 * 119.99706 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00056 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00486 * 359.97438 * 12 2 1 15 15 C 1.52996 * 109.47491 * 180.02562 * 14 12 2 16 16 C 1.50702 * 109.47159 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00262 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72352 * 16 15 14 19 19 C 1.47151 * 120.98153 * 359.97438 * 18 16 15 20 20 C 1.53717 * 108.16446 * 129.42886 * 19 18 16 21 21 O 1.42967 * 109.14561 * 52.53739 * 20 19 18 22 22 C 1.42962 * 114.16617 * 297.29050 * 21 20 19 23 23 C 1.47151 * 120.98263 * 180.27616 * 18 16 15 24 24 H 1.08997 * 109.47117 * 269.99725 * 1 2 3 25 25 H 1.09002 * 109.47094 * 29.99787 * 1 2 3 26 26 H 1.09003 * 109.47214 * 149.99618 * 1 2 3 27 27 H 1.09001 * 109.47563 * 30.00286 * 3 2 1 28 28 H 1.09003 * 109.47007 * 150.00002 * 3 2 1 29 29 H 0.97006 * 120.00051 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46801 * 60.00195 * 14 12 2 31 31 H 1.09000 * 109.47461 * 300.00727 * 14 12 2 32 32 H 1.09004 * 109.47066 * 60.00201 * 15 14 12 33 33 H 1.08994 * 109.47405 * 300.00031 * 15 14 12 34 34 H 1.08997 * 109.67944 * 249.20758 * 19 18 16 35 35 H 1.09001 * 109.68346 * 9.76100 * 19 18 16 36 36 H 1.08998 * 109.65611 * 292.57311 * 20 19 18 37 37 H 1.08994 * 109.48424 * 172.39690 * 20 19 18 38 38 H 1.09008 * 109.51186 * 302.65841 * 22 21 20 39 39 H 1.08996 * 109.55507 * 182.53559 * 22 21 20 40 40 H 1.09000 * 109.68250 * 350.23937 * 23 18 16 41 41 H 1.09002 * 109.68088 * 110.79250 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3465 3.2570 -2.9126 8 14 3.7351 3.9280 -0.2528 9 1 5.1083 3.5057 0.1226 10 1 3.7509 5.3548 -0.6641 11 1 2.8293 3.7586 0.9117 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 6 1.6260 -4.9403 0.0001 17 8 0.4132 -4.9403 0.0001 18 7 2.2999 -6.1075 -0.0054 19 6 3.7712 -6.1327 -0.0127 20 6 4.2399 -7.0706 1.1114 21 8 3.5831 -8.3329 0.9733 22 6 2.1612 -8.2707 1.1081 23 6 1.5861 -7.3943 -0.0110 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6085 2.0284 0.5139 28 1 3.1499 1.1383 0.5138 29 1 3.8233 4.0829 -3.0898 30 1 0.7584 -2.5298 -0.8903 31 1 0.7590 -2.5302 0.8896 32 1 3.0062 -3.5775 0.8895 33 1 3.0062 -3.5775 -0.8904 34 1 4.1272 -6.5015 -0.9746 35 1 4.1565 -5.1280 0.1613 36 1 3.9920 -6.6352 2.0794 37 1 5.3184 -7.2117 1.0411 38 1 1.9058 -7.8396 2.0762 39 1 1.7436 -9.2748 1.0352 40 1 0.5236 -7.2254 0.1641 41 1 1.7263 -7.8877 -0.9728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126700719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:09 Heat of formation + Delta-G solvation = -109.184092 kcal Electronic energy + Delta-G solvation = -22605.463108 eV Core-core repulsion = 19099.916748 eV Total energy + Delta-G solvation = -3505.546360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59159 -39.17043 -38.40706 -35.02390 -34.97078 -33.04617 -32.44591 -31.57512 -28.85148 -28.11340 -26.16015 -25.28679 -24.20654 -22.53365 -21.62838 -19.31163 -18.49007 -17.57026 -16.97561 -16.80501 -16.32157 -16.18177 -15.69470 -15.54979 -15.33976 -15.15572 -14.83473 -14.11598 -13.81222 -13.68324 -13.02987 -12.89467 -12.68546 -12.34760 -12.26438 -12.16511 -11.99143 -11.78009 -11.76829 -11.35907 -11.13622 -11.10292 -10.86903 -10.55601 -10.52181 -10.14937 -9.91383 -9.55010 -9.03937 -8.87395 -8.59649 -7.70813 -6.09286 -4.08127 2.46190 2.58205 3.28634 3.33248 3.34711 3.36122 3.41859 3.83229 4.31929 4.36823 4.39051 4.60536 4.67323 4.82663 4.86658 4.93945 5.10284 5.15520 5.18979 5.22313 5.29254 5.37069 5.42556 5.53901 5.60982 5.73831 5.86402 5.97352 5.99509 6.13258 6.21900 6.67630 6.69385 6.93118 7.05807 7.32826 7.60394 7.95284 8.23779 8.46410 8.91198 8.96976 9.50924 11.04150 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.003215 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.984469 B = 8707.024785 C = 9133.736661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.597 5.597 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.506 3.494 13 O -0.547 6.547 14 C -0.123 4.123 15 C -0.123 4.123 16 C 0.520 3.480 17 O -0.540 6.540 18 N -0.621 5.621 19 C 0.069 3.931 20 C 0.047 3.953 21 O -0.381 6.381 22 C 0.048 3.952 23 C 0.076 3.924 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 -20.939 9.061 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.328 5.328 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.293 3.707 13 O -0.425 6.425 14 C -0.163 4.163 15 C -0.163 4.163 16 C 0.310 3.690 17 O -0.416 6.416 18 N -0.357 5.357 19 C -0.054 4.054 20 C -0.031 4.031 21 O -0.299 6.299 22 C -0.029 4.029 23 C -0.047 4.047 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.716 -20.916 8.918 22.899 hybrid contribution 0.192 0.926 0.496 1.068 sum -2.525 -19.989 9.414 22.239 Atomic orbital electron populations 1.21699 0.80749 1.03192 1.00583 1.47828 1.06419 1.07122 1.71481 1.19670 0.92453 0.80117 0.98357 1.21339 1.36932 1.07189 0.91289 0.90779 1.24867 0.95256 0.97349 0.95598 1.69900 1.41498 1.23573 1.18672 0.86831 0.80088 0.79734 0.82918 1.19908 1.21072 1.19069 1.20325 0.88014 0.85200 0.77118 1.90651 1.13898 1.87413 1.50563 1.21395 0.98364 0.91488 1.05071 1.21412 0.98966 0.90081 1.05825 1.20937 0.87991 0.85309 0.74773 1.90682 1.13985 1.87291 1.49683 1.48168 1.06939 1.05871 1.74727 1.22614 0.79816 1.02508 1.00477 1.23087 0.98195 0.84374 0.97426 1.87966 1.19029 1.29685 1.93243 1.22999 0.81431 1.00938 0.97563 1.22279 0.98828 0.83789 0.99784 0.93568 0.90568 0.91825 0.95229 0.94543 0.92557 0.88548 0.88884 0.88137 0.87798 0.90116 0.87838 0.92377 0.87366 0.92590 0.87634 0.88026 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.24 59.85 0.61 1.91 16 2 N -0.60 -12.39 2.86 -182.95 -0.52 -12.91 16 3 C 0.21 5.27 4.23 -5.19 -0.02 5.25 16 4 C -0.53 -15.28 9.94 -34.44 -0.34 -15.62 16 5 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 8 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 12 C 0.51 10.12 7.67 -10.99 -0.08 10.03 16 13 O -0.55 -12.82 15.56 5.55 0.09 -12.73 16 14 C -0.12 -1.84 3.54 -27.89 -0.10 -1.94 16 15 C -0.12 -1.60 3.36 -27.88 -0.09 -1.69 16 16 C 0.52 6.69 7.71 -10.98 -0.08 6.61 16 17 O -0.54 -8.45 15.45 5.55 0.09 -8.37 16 18 N -0.62 -6.45 3.01 -171.99 -0.52 -6.97 16 19 C 0.07 0.56 6.56 -3.31 -0.02 0.54 16 20 C 0.05 0.34 7.00 37.53 0.26 0.60 16 21 O -0.38 -3.41 10.74 -35.23 -0.38 -3.79 16 22 C 0.05 0.36 6.99 37.33 0.26 0.62 16 23 C 0.08 0.68 6.64 -3.51 -0.02 0.65 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 26 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 27 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 28 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.10 1.43 7.36 -51.93 -0.38 1.05 16 31 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 32 H 0.10 1.21 7.63 -51.93 -0.40 0.82 16 33 H 0.10 1.37 7.96 -51.93 -0.41 0.96 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.79 6.06 -51.93 -0.31 0.47 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.98 7.08 -51.93 -0.37 0.61 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -36.17 335.16 -6.14 -42.31 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.32 Total: -1.45 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 0.27 Total: 8.96 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.27 Total: -46.86 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.21 Total: -24.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.17 -6.14 -42.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126700719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.870 kcal (2) G-P(sol) polarization free energy of solvation -36.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds