Wall clock time and date at job start Tue Mar 31 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46493 * 119.99898 * 2 1 4 4 C 1.50706 * 109.47567 * 270.00190 * 3 2 1 5 5 H 1.08000 * 119.99524 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00150 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99809 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99916 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47160 * 89.99803 * 8 6 4 10 10 H 1.48500 * 109.46559 * 209.99872 * 8 6 4 11 11 H 1.48499 * 109.47053 * 329.99483 * 8 6 4 12 12 C 1.34770 * 119.99706 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00056 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00486 * 359.97438 * 12 2 1 15 15 C 1.52996 * 109.47491 * 180.02562 * 14 12 2 16 16 C 1.50702 * 109.47159 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00262 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72352 * 16 15 14 19 19 C 1.47151 * 120.98153 * 359.97438 * 18 16 15 20 20 C 1.53717 * 108.16446 * 129.42886 * 19 18 16 21 21 O 1.42967 * 109.14561 * 52.53739 * 20 19 18 22 22 C 1.42962 * 114.16617 * 297.29050 * 21 20 19 23 23 C 1.47151 * 120.98263 * 180.27616 * 18 16 15 24 24 H 1.08997 * 109.47117 * 269.99725 * 1 2 3 25 25 H 1.09002 * 109.47094 * 29.99787 * 1 2 3 26 26 H 1.09003 * 109.47214 * 149.99618 * 1 2 3 27 27 H 1.09001 * 109.47563 * 30.00286 * 3 2 1 28 28 H 1.09003 * 109.47007 * 150.00002 * 3 2 1 29 29 H 0.97006 * 120.00051 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46801 * 60.00195 * 14 12 2 31 31 H 1.09000 * 109.47461 * 300.00727 * 14 12 2 32 32 H 1.09004 * 109.47066 * 60.00201 * 15 14 12 33 33 H 1.08994 * 109.47405 * 300.00031 * 15 14 12 34 34 H 1.08997 * 109.67944 * 249.20758 * 19 18 16 35 35 H 1.09001 * 109.68346 * 9.76100 * 19 18 16 36 36 H 1.08998 * 109.65611 * 292.57311 * 20 19 18 37 37 H 1.08994 * 109.48424 * 172.39690 * 20 19 18 38 38 H 1.09008 * 109.51186 * 302.65841 * 22 21 20 39 39 H 1.08996 * 109.55507 * 182.53559 * 22 21 20 40 40 H 1.09000 * 109.68250 * 350.23937 * 23 18 16 41 41 H 1.09002 * 109.68088 * 110.79250 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3465 3.2570 -2.9126 8 14 3.7351 3.9280 -0.2528 9 1 5.1083 3.5057 0.1226 10 1 3.7509 5.3548 -0.6641 11 1 2.8293 3.7586 0.9117 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 6 1.6260 -4.9403 0.0001 17 8 0.4132 -4.9403 0.0001 18 7 2.2999 -6.1075 -0.0054 19 6 3.7712 -6.1327 -0.0127 20 6 4.2399 -7.0706 1.1114 21 8 3.5831 -8.3329 0.9733 22 6 2.1612 -8.2707 1.1081 23 6 1.5861 -7.3943 -0.0110 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6085 2.0284 0.5139 28 1 3.1499 1.1383 0.5138 29 1 3.8233 4.0829 -3.0898 30 1 0.7584 -2.5298 -0.8903 31 1 0.7590 -2.5302 0.8896 32 1 3.0062 -3.5775 0.8895 33 1 3.0062 -3.5775 -0.8904 34 1 4.1272 -6.5015 -0.9746 35 1 4.1565 -5.1280 0.1613 36 1 3.9920 -6.6352 2.0794 37 1 5.3184 -7.2117 1.0411 38 1 1.9058 -7.8396 2.0762 39 1 1.7436 -9.2748 1.0352 40 1 0.5236 -7.2254 0.1641 41 1 1.7263 -7.8877 -0.9728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126700719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:09 Heat of formation + Delta-G solvation = -135.882188 kcal Electronic energy + Delta-G solvation = -22606.620824 eV Core-core repulsion = 19099.916748 eV Total energy + Delta-G solvation = -3506.704077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.50908 -40.60812 -39.31231 -36.67510 -35.84366 -34.76052 -34.01308 -32.33813 -30.59462 -29.06358 -27.48448 -26.60591 -25.02374 -23.99341 -22.75590 -20.23129 -19.92420 -19.14954 -18.67318 -17.73236 -17.29768 -17.25442 -17.01303 -16.61097 -16.41440 -16.14034 -16.00692 -15.63425 -14.94066 -14.78573 -14.63453 -14.13236 -13.96325 -13.65845 -13.56872 -13.52605 -13.30597 -13.02470 -12.80658 -12.64545 -12.38393 -12.36193 -12.22126 -11.99839 -11.76637 -11.74527 -11.25385 -10.90488 -10.83054 -10.68679 -9.66555 -9.40352 -8.33938 -6.39538 1.34087 1.37715 1.46667 1.47025 1.72435 1.78250 2.31577 2.36804 2.85720 3.00439 3.34339 3.70710 3.79310 3.90164 4.00594 4.03408 4.09309 4.21000 4.26767 4.37996 4.48204 4.60071 4.65197 4.65648 4.74674 4.77512 4.83135 4.84294 4.89686 4.92688 4.96327 4.98417 5.34424 5.45408 5.60361 6.08932 6.18063 6.23371 6.61822 6.67283 6.99184 7.20638 7.38616 8.83154 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.003215 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.984469 B = 8707.024785 C = 9133.736661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.608 5.608 3 C 0.222 3.778 4 C -0.538 4.538 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.238 1.238 12 C 0.499 3.501 13 O -0.589 6.589 14 C -0.108 4.108 15 C -0.118 4.118 16 C 0.523 3.477 17 O -0.572 6.572 18 N -0.619 5.619 19 C 0.065 3.935 20 C 0.047 3.953 21 O -0.395 6.395 22 C 0.052 3.948 23 C 0.073 3.927 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.269 0.731 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.129 0.871 38 H 0.055 0.945 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 -21.771 11.162 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.339 5.339 3 C 0.100 3.900 4 C -0.577 4.577 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.773 3.227 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.161 1.161 12 C 0.288 3.712 13 O -0.470 6.470 14 C -0.148 4.148 15 C -0.158 4.158 16 C 0.313 3.687 17 O -0.452 6.452 18 N -0.353 5.353 19 C -0.058 4.058 20 C -0.030 4.030 21 O -0.313 6.313 22 C -0.025 4.025 23 C -0.049 4.049 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.146 0.854 38 H 0.073 0.927 39 H 0.146 0.854 40 H 0.111 0.889 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.985 -21.794 11.029 24.607 hybrid contribution 0.262 1.098 -0.257 1.157 sum -2.722 -20.696 10.772 23.490 Atomic orbital electron populations 1.21964 0.77783 1.03841 1.02971 1.47966 1.08404 1.06152 1.71407 1.19360 0.92863 0.82475 0.95295 1.21576 1.36827 1.06846 0.92434 0.95487 1.25887 0.95278 0.98937 0.98719 1.70057 1.42715 1.24507 1.21384 0.85670 0.79653 0.77620 0.79734 1.19887 1.20136 1.16101 1.21177 0.87823 0.86439 0.75743 1.90619 1.15917 1.88146 1.52339 1.21309 0.98308 0.89096 1.06111 1.21341 0.98548 0.89721 1.06174 1.20781 0.87481 0.85801 0.74683 1.90667 1.15127 1.87763 1.51597 1.48252 1.08018 1.05731 1.73285 1.22801 0.78372 1.03184 1.01400 1.23199 0.99232 0.83625 0.96963 1.87955 1.19635 1.30484 1.93236 1.23067 0.80892 1.01811 0.96759 1.22411 0.98380 0.83265 1.00871 0.90154 0.91496 0.89730 0.93223 0.95871 0.92242 0.88229 0.86796 0.87097 0.88281 0.89398 0.87462 0.92212 0.85368 0.92656 0.85438 0.88874 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.27 10.24 127.77 1.31 3.58 16 2 N -0.61 -24.77 2.86 -851.13 -2.43 -27.20 16 3 C 0.22 10.81 4.23 85.64 0.36 11.17 16 4 C -0.54 -31.82 9.94 25.60 0.25 -31.56 16 5 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 6 C 0.01 0.57 5.47 84.65 0.46 1.03 16 7 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 8 Si 0.95 44.18 27.47 68.60 1.88 46.06 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.24 -9.90 6.54 99.48 0.65 -9.24 16 12 C 0.50 19.71 7.67 87.66 0.67 20.38 16 13 O -0.59 -27.84 15.56 -3.04 -0.05 -27.89 16 14 C -0.11 -3.10 3.54 29.85 0.11 -2.99 16 15 C -0.12 -2.95 3.36 29.85 0.10 -2.85 16 16 C 0.52 12.86 7.71 87.66 0.68 13.54 16 17 O -0.57 -17.32 15.45 -3.04 -0.05 -17.37 16 18 N -0.62 -12.02 3.01 -816.44 -2.46 -14.48 16 19 C 0.06 0.95 6.56 86.50 0.57 1.51 16 20 C 0.05 0.59 7.00 72.22 0.51 1.09 16 21 O -0.39 -6.24 10.74 -148.98 -1.60 -7.84 16 22 C 0.05 0.68 6.99 72.10 0.50 1.18 16 23 C 0.07 1.20 6.64 86.37 0.57 1.77 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 26 H 0.08 2.14 6.44 -2.39 -0.02 2.13 16 27 H 0.05 2.21 7.13 -2.39 -0.02 2.20 16 28 H 0.02 1.19 6.85 -2.39 -0.02 1.17 16 29 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 30 H 0.10 2.83 7.36 -2.38 -0.02 2.81 16 31 H 0.11 2.82 8.06 -2.39 -0.02 2.80 16 32 H 0.11 2.54 7.63 -2.38 -0.02 2.52 16 33 H 0.10 2.58 7.96 -2.39 -0.02 2.56 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.11 1.49 6.06 -2.39 -0.01 1.47 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.71 7.08 -2.39 -0.02 1.70 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -80.04 335.16 2.65 -77.39 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.96 Total: 13.19 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.09 Total: 17.86 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -4.59 Total: -101.40 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -1.69 Total: -53.10 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -80.04 2.65 -77.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126700719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.491 kcal (2) G-P(sol) polarization free energy of solvation -80.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds