Wall clock time and date at job start Tue Mar 31 2020 03:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47466 * 2 1 4 4 C 1.53005 * 112.90694 * 53.05598 * 3 2 1 5 5 C 1.52996 * 109.46690 * 65.70117 * 4 3 2 6 6 C 1.53789 * 113.61284 * 281.80852 * 3 2 1 7 7 H 1.08996 * 113.61135 * 334.56676 * 6 3 2 8 8 N 1.46901 * 113.61101 * 105.38477 * 6 3 2 9 9 C 1.46909 * 110.99725 * 204.99769 * 8 6 3 10 10 C 1.50687 * 109.47073 * 180.02562 * 9 8 6 11 11 O 1.21293 * 120.00293 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00243 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00586 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99877 * 0.02562 * 13 12 10 15 15 C 1.38954 * 120.00244 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99780 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00010 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47244 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47244 * 120.00231 * 17 15 13 20 20 H 1.48504 * 109.47201 * 240.00394 * 17 15 13 21 21 C 1.53777 * 87.07889 * 220.01695 * 6 3 2 22 22 C 1.53779 * 113.61794 * 184.30924 * 3 2 1 23 23 H 1.08995 * 113.61279 * 254.61352 * 22 3 2 24 24 O 1.42898 * 113.61142 * 25.43424 * 22 3 2 25 25 C 1.42905 * 113.99921 * 209.99831 * 24 22 3 26 26 H 1.09001 * 109.46992 * 54.53306 * 1 2 3 27 27 H 1.09005 * 109.47389 * 174.53285 * 1 2 3 28 28 H 1.09001 * 109.47357 * 294.53309 * 1 2 3 29 29 H 1.09003 * 109.46903 * 239.99824 * 2 1 3 30 30 H 1.08998 * 109.47065 * 120.00243 * 2 1 3 31 31 H 1.08998 * 109.46918 * 185.70082 * 4 3 2 32 32 H 1.09003 * 109.46800 * 305.70079 * 4 3 2 33 33 H 1.08999 * 109.47725 * 295.84079 * 5 4 3 34 34 H 1.09004 * 109.47562 * 55.84306 * 5 4 3 35 35 H 1.09006 * 109.46960 * 175.84135 * 5 4 3 36 36 H 1.00892 * 111.00306 * 328.94680 * 8 6 3 37 37 H 1.08997 * 109.46832 * 300.00761 * 9 8 6 38 38 H 1.08995 * 109.46776 * 59.99893 * 9 8 6 39 39 H 0.97002 * 119.99749 * 0.02562 * 12 10 9 40 40 H 0.97003 * 120.00116 * 179.97438 * 16 15 13 41 41 H 1.09007 * 113.61392 * 270.88621 * 21 6 3 42 42 H 1.09000 * 113.61659 * 139.98174 * 21 6 3 43 43 H 1.08995 * 109.47090 * 179.97438 * 25 24 22 44 44 H 1.08997 * 109.47103 * 299.99865 * 25 24 22 45 45 H 1.09001 * 109.46439 * 59.99853 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4400 2.2863 1.1264 5 6 1.9174 1.7480 2.4766 6 6 1.9736 2.1193 -1.3793 7 1 2.0053 1.4170 -2.2122 8 7 0.8871 3.1005 -1.5014 9 6 0.4852 3.2691 -2.9044 10 6 -0.6280 4.2810 -2.9899 11 8 -1.0459 4.8096 -1.9813 12 7 -1.1601 4.5981 -4.1869 13 6 -2.1732 5.5184 -4.2647 14 1 -2.5448 5.9897 -3.3668 15 6 -2.7214 5.8457 -5.4989 16 7 -2.2689 5.2726 -6.5915 17 14 -4.1013 7.1001 -5.6049 18 1 -4.4261 7.5951 -4.2430 19 1 -3.6709 8.2389 -6.4554 20 1 -5.3038 6.4641 -6.2007 21 6 3.3385 2.7465 -1.0500 22 6 3.5701 1.5549 -0.1059 23 1 4.0538 1.8269 0.8322 24 8 4.1839 0.4319 -0.7416 25 6 5.5106 0.1595 -0.2859 26 1 -0.3633 0.5963 -0.8370 27 1 -0.3634 -1.0230 -0.0979 28 1 -0.3634 0.4267 0.9349 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.7601 3.3222 1.0144 32 1 0.3522 2.2350 1.0788 33 1 1.5350 0.7376 2.6208 34 1 3.0071 1.7303 2.4960 35 1 1.5503 2.3928 3.2752 36 1 0.0987 2.8403 -0.9283 37 1 1.3379 3.6172 -3.4872 38 1 0.1400 2.3141 -3.3005 39 1 -0.8266 4.1746 -4.9933 40 1 -2.6518 5.5008 -7.4531 41 1 3.2660 3.7042 -0.5344 42 1 4.0234 2.7716 -1.8975 43 1 5.9062 -0.7068 -0.8161 44 1 6.1455 1.0244 -0.4779 45 1 5.4919 -0.0472 0.7842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191363845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:52 Heat of formation + Delta-G solvation = -92.111605 kcal Electronic energy + Delta-G solvation = -23459.439865 eV Core-core repulsion = 20090.466918 eV Total energy + Delta-G solvation = -3368.972947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62478 -40.03225 -37.70448 -36.09041 -35.21122 -33.47295 -33.18878 -32.17045 -28.65456 -27.43271 -26.55998 -26.06328 -24.26587 -23.88526 -22.01211 -21.10087 -19.92358 -19.14683 -18.10837 -17.28315 -16.89944 -16.68812 -16.43064 -16.06666 -15.93049 -15.58880 -15.39758 -15.13970 -14.61437 -14.54025 -14.05975 -13.81820 -13.64622 -13.50289 -13.36613 -13.11159 -12.97494 -12.85848 -12.58310 -12.41892 -12.38559 -12.24273 -12.11584 -12.09738 -11.78337 -11.51799 -11.35266 -11.09719 -10.90136 -10.30353 -10.26698 -10.01934 -9.27244 -8.46984 -5.95894 1.36374 1.41397 1.56053 2.04269 2.29044 2.73710 2.96985 3.20091 3.44142 3.56084 3.62761 3.92928 4.03035 4.12746 4.27331 4.33144 4.41234 4.42680 4.48989 4.53012 4.56545 4.60784 4.63188 4.65896 4.75124 4.86201 4.89987 4.99618 5.03392 5.11174 5.12885 5.16241 5.28752 5.37481 5.39591 5.40852 5.51106 5.63220 5.93128 6.16438 6.36494 6.44469 6.59575 7.12009 7.55410 8.10455 8.70812 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.003404 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.241118 B = 8223.367591 C = 8583.000359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.070 4.070 4 C -0.097 4.097 5 C -0.145 4.145 6 C 0.069 3.931 7 H 0.069 0.931 8 N -0.661 5.661 9 C 0.064 3.936 10 C 0.440 3.560 11 O -0.620 6.620 12 N -0.574 5.574 13 C -0.333 4.333 14 H 0.079 0.921 15 C -0.014 4.014 16 N -0.921 5.921 17 Si 0.994 3.006 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.270 1.270 21 C -0.145 4.145 22 C 0.081 3.919 23 H 0.092 0.908 24 O -0.384 6.384 25 C 0.025 3.975 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.344 0.656 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.395 0.605 40 H 0.278 0.722 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.046 0.954 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.846 -12.515 12.912 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.132 4.132 3 C -0.071 4.071 4 C -0.134 4.134 5 C -0.203 4.203 6 C -0.041 4.041 7 H 0.087 0.913 8 N -0.293 5.293 9 C -0.069 4.069 10 C 0.227 3.773 11 O -0.506 6.506 12 N -0.211 5.211 13 C -0.463 4.463 14 H 0.097 0.903 15 C -0.214 4.214 16 N -0.562 5.562 17 Si 0.818 3.182 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.195 1.195 21 C -0.184 4.184 22 C 0.022 3.978 23 H 0.110 0.890 24 O -0.302 6.302 25 C -0.071 4.071 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.164 0.836 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.064 0.936 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.837 -11.716 13.230 22.445 hybrid contribution -0.912 -0.124 -0.980 1.344 sum 12.926 -11.840 12.250 21.385 Atomic orbital electron populations 1.21812 0.96247 1.01571 1.01379 1.21255 0.95001 0.94574 1.02338 1.22371 0.94459 0.95897 0.94383 1.21205 1.00232 0.98580 0.93413 1.21748 1.01456 1.01330 0.95719 1.23182 0.91745 0.92105 0.97078 0.91346 1.60302 1.13178 1.49319 1.06543 1.21575 0.96339 0.96541 0.92420 1.20814 0.86407 0.86707 0.83354 1.90480 1.65742 1.58079 1.36342 1.41947 1.33023 1.38368 1.07755 1.19717 1.12956 1.19079 0.94501 0.90263 1.26067 1.01101 1.00164 0.94030 1.69687 1.43723 1.43989 0.98843 0.84854 0.77450 0.77640 0.78281 1.19716 1.19594 1.19537 1.23549 0.96211 0.98429 1.00176 1.23010 0.93079 0.86336 0.95339 0.89000 1.87849 1.29894 1.48020 1.64480 1.22978 0.82621 1.01509 0.99982 0.94801 0.92064 0.92034 0.92230 0.90783 0.91964 0.92001 0.92134 0.92090 0.92270 0.83566 0.88432 0.92309 0.77090 0.91304 0.89026 0.91524 0.88631 0.93572 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.23 71.98 0.66 -2.58 16 2 C -0.09 -1.92 4.57 30.59 0.14 -1.78 16 3 C -0.07 -1.52 0.43 -51.65 -0.02 -1.54 16 4 C -0.10 -2.09 3.89 30.59 0.12 -1.97 16 5 C -0.15 -2.37 9.55 71.98 0.69 -1.68 16 6 C 0.07 1.83 3.31 45.44 0.15 1.98 16 7 H 0.07 1.91 7.75 -2.39 -0.02 1.89 16 8 N -0.66 -22.09 5.67 -492.86 -2.79 -24.88 16 9 C 0.06 2.36 6.01 85.55 0.51 2.88 16 10 C 0.44 21.71 7.82 87.65 0.69 22.40 16 11 O -0.62 -35.14 15.78 -3.07 -0.05 -35.18 16 12 N -0.57 -30.39 5.29 -307.00 -1.62 -32.02 16 13 C -0.33 -19.33 9.68 84.04 0.81 -18.52 16 14 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 15 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 16 N -0.92 -50.67 13.05 21.66 0.28 -50.39 16 17 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 C -0.15 -3.47 7.36 31.12 0.23 -3.24 16 22 C 0.08 1.61 3.63 31.12 0.11 1.72 16 23 H 0.09 1.52 6.43 -2.39 -0.02 1.51 16 24 O -0.38 -7.77 9.53 -148.98 -1.42 -9.19 16 25 C 0.03 0.34 10.85 113.37 1.23 1.57 16 26 H 0.03 0.84 7.56 -2.39 -0.02 0.83 16 27 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.06 1.24 6.83 -2.39 -0.02 1.23 16 29 H 0.06 1.33 7.56 -2.39 -0.02 1.31 16 30 H 0.07 1.32 7.36 -2.39 -0.02 1.30 16 31 H 0.06 1.54 7.27 -2.39 -0.02 1.52 16 32 H 0.06 1.49 5.89 -2.39 -0.01 1.47 16 33 H 0.06 0.91 7.25 -2.39 -0.02 0.90 16 34 H 0.06 0.87 6.64 -2.39 -0.02 0.85 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.34 12.08 6.65 -89.70 -0.60 11.48 16 37 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 39 H 0.40 20.01 7.90 -92.71 -0.73 19.28 16 40 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.09 2.31 7.61 -2.38 -0.02 2.29 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -66.34 355.31 1.88 -64.47 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -0.34 Total: 42.64 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 5.79 Total: -1.08 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -4.13 Total: -107.28 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -1.47 Total: -44.38 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -66.34 1.88 -64.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191363845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.644 kcal (2) G-P(sol) polarization free energy of solvation -66.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds