Wall clock time and date at job start Tue Mar 31 2020 03:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99949 * 2 1 4 4 C 1.53241 * 109.33967 * 187.25138 * 3 2 1 5 5 N 1.47074 * 108.52331 * 306.17315 * 4 3 2 6 6 C 1.34776 * 120.88355 * 231.18537 * 5 4 3 7 7 O 1.21582 * 119.99901 * 5.26816 * 6 5 4 8 8 N 1.34777 * 120.00117 * 185.26965 * 6 5 4 9 9 N 1.40095 * 120.00077 * 185.14389 * 8 6 5 10 10 C 1.34780 * 120.00160 * 174.78808 * 9 8 6 11 11 O 1.21282 * 119.99757 * 0.26830 * 10 9 8 12 12 C 1.50699 * 119.99931 * 180.27456 * 10 9 8 13 13 C 1.52999 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.47473 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99835 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00136 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00072 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00031 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47247 * 60.00043 * 18 16 14 20 20 H 1.48499 * 109.47278 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47221 * 300.00150 * 18 16 14 22 22 C 1.47085 * 118.23547 * 51.46113 * 5 4 3 23 23 C 1.46900 * 111.00293 * 124.30708 * 2 1 3 24 24 H 1.09005 * 109.47449 * 59.99870 * 1 2 3 25 25 H 1.09006 * 109.47145 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47378 * 299.99715 * 1 2 3 27 27 H 1.09007 * 109.48580 * 67.29699 * 3 2 1 28 28 H 1.08993 * 109.51716 * 307.23365 * 3 2 1 29 29 H 1.08999 * 109.62609 * 186.46456 * 4 3 2 30 30 H 1.09001 * 109.78453 * 65.98520 * 4 3 2 31 31 H 0.97000 * 119.99690 * 5.14310 * 8 6 5 32 32 H 0.97007 * 120.00161 * 355.05244 * 9 8 6 33 33 H 1.09003 * 109.47182 * 299.99341 * 12 10 9 34 34 H 1.08997 * 109.47539 * 59.99992 * 12 10 9 35 35 H 1.09001 * 109.47211 * 300.00531 * 13 12 10 36 36 H 1.09002 * 109.47351 * 59.99718 * 13 12 10 37 37 H 0.96998 * 119.99966 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.62984 * 68.25097 * 22 5 4 39 39 H 1.09007 * 109.62670 * 188.83323 * 22 5 4 40 40 H 1.09001 * 109.49066 * 292.71199 * 23 2 1 41 41 H 1.09005 * 109.49138 * 52.75506 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5164 1.3312 -0.1825 5 7 4.0869 0.4460 0.8442 6 6 5.1055 0.8582 1.6245 7 8 5.5016 2.0054 1.5514 8 7 5.6850 -0.0012 2.4860 9 7 6.6698 0.4532 3.3727 10 6 7.1741 -0.3800 4.3044 11 8 6.7788 -1.5246 4.3718 12 6 8.2290 0.1106 5.2622 13 6 8.6258 -1.0241 6.2088 14 6 9.6811 -0.5338 7.1662 15 1 10.0333 0.4854 7.1060 16 6 10.1963 -1.3859 8.1199 17 7 9.7671 -2.6269 8.1936 18 14 11.5040 -0.7779 9.3072 19 1 10.9662 0.3598 10.0957 20 1 11.8892 -1.8792 10.2259 21 1 12.6966 -0.3309 8.5436 22 6 3.5205 -0.9032 0.9925 23 6 1.9955 -0.7730 1.1328 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 1.7555 1.8530 0.9480 28 1 1.5456 1.9341 -0.8179 29 1 3.9255 2.3351 -0.0688 30 1 3.7591 0.9470 -1.1733 31 1 5.4202 -0.9343 2.4920 32 1 6.9861 1.3687 3.3188 33 1 9.1042 0.4393 4.7017 34 1 7.8340 0.9451 5.8416 35 1 7.7505 -1.3526 6.7692 36 1 9.0207 -1.8590 5.6298 37 1 10.1293 -3.2263 8.8647 38 1 3.7607 -1.5000 0.1126 39 1 3.9323 -1.3773 1.8835 40 1 1.7555 -0.2615 2.0650 41 1 1.5453 -1.7657 1.1364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293341589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:31 Heat of formation + Delta-G solvation = -45.468117 kcal Electronic energy + Delta-G solvation = -22204.668403 eV Core-core repulsion = 18734.177726 eV Total energy + Delta-G solvation = -3470.490677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.85700 -40.60558 -39.16460 -36.56203 -35.79947 -35.55584 -33.40010 -32.51022 -31.57548 -29.38639 -27.59566 -25.44048 -24.87716 -23.86251 -22.77559 -21.98879 -20.65621 -19.47078 -18.84096 -18.58923 -17.32023 -17.08242 -16.73464 -16.46074 -16.40056 -16.20010 -15.86981 -15.70778 -15.27388 -15.03800 -14.72885 -14.26727 -14.22777 -13.72527 -13.26018 -13.11431 -12.83493 -12.78992 -12.53901 -12.50651 -12.41466 -12.29694 -12.11329 -11.91767 -11.67208 -11.55270 -11.32795 -11.03775 -10.53795 -10.08372 -9.46603 -9.25861 -8.16678 -6.29830 0.54407 1.42578 1.44645 1.48323 1.55881 1.91410 2.10767 2.44348 2.88618 3.16057 3.16938 3.73700 3.88874 3.93246 3.99845 4.15271 4.25888 4.41409 4.46913 4.53348 4.60114 4.62808 4.69257 4.74462 4.79957 4.99990 5.01277 5.04604 5.17547 5.43008 5.51113 5.63258 5.64025 5.86605 5.94871 5.96580 6.16430 6.18763 6.64778 6.86630 6.96934 7.39955 7.42236 8.95617 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041998 B = 0.002629 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.543289 B =10649.498425 C =11081.605530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.046 3.954 4 C 0.133 3.867 5 N -0.620 5.620 6 C 0.710 3.290 7 O -0.621 6.621 8 N -0.541 5.541 9 N -0.507 5.507 10 C 0.519 3.481 11 O -0.578 6.578 12 C -0.107 4.107 13 C 0.043 3.957 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.972 3.028 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.263 1.263 22 C 0.108 3.892 23 C 0.043 3.957 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.022 0.978 27 H 0.026 0.974 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.429 0.571 32 H 0.438 0.562 33 H 0.113 0.887 34 H 0.112 0.888 35 H -0.012 1.012 36 H -0.011 1.011 37 H 0.263 0.737 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.028 0.972 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.129 7.540 -19.153 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.083 4.083 4 C 0.011 3.989 5 N -0.359 5.359 6 C 0.411 3.589 7 O -0.501 6.501 8 N -0.294 5.294 9 N -0.258 5.258 10 C 0.307 3.693 11 O -0.455 6.455 12 C -0.148 4.148 13 C 0.005 3.995 14 C -0.581 4.581 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.796 3.204 19 H -0.188 1.188 20 H -0.214 1.214 21 H -0.188 1.188 22 C -0.014 4.014 23 C -0.086 4.086 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.274 0.726 32 H 0.282 0.718 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.007 0.993 36 H 0.007 0.993 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.046 0.954 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.979 7.168 -19.504 27.478 hybrid contribution 0.289 0.105 1.543 1.573 sum -17.690 7.274 -17.962 26.238 Atomic orbital electron populations 1.22427 0.85554 1.03103 1.01202 1.61985 1.09159 1.13368 1.42687 1.22511 0.94302 0.89855 1.01658 1.21758 0.92254 0.94771 0.90117 1.47314 1.33666 1.17225 1.37651 1.15623 0.80553 0.83691 0.79007 1.90895 1.67730 1.18641 1.72826 1.43830 1.37544 1.12440 1.35589 1.44961 1.35443 1.16124 1.29229 1.21752 0.82690 0.85024 0.79791 1.90669 1.62183 1.20332 1.72295 1.21633 0.96121 1.01347 0.95717 1.18709 0.94974 0.92777 0.93010 1.21672 1.22047 0.98577 1.15834 0.90506 1.26084 0.99481 0.94927 0.99784 1.70153 1.44753 1.06748 1.35947 0.85404 0.78989 0.77812 0.78223 1.18823 1.21438 1.18805 1.22097 0.93504 0.82478 1.03361 1.22568 0.94153 1.00187 0.91674 0.89970 0.90220 0.95940 0.95539 0.87120 0.89430 0.89245 0.72614 0.71803 0.86892 0.86996 0.99347 0.99296 0.92857 0.88389 0.89927 0.95363 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.58 127.69 1.22 1.45 16 2 N -0.55 -6.86 4.88 -920.52 -4.49 -11.35 16 3 C 0.05 0.59 5.62 86.38 0.49 1.08 16 4 C 0.13 2.17 6.61 86.35 0.57 2.74 16 5 N -0.62 -12.42 3.00 -835.05 -2.51 -14.92 16 6 C 0.71 19.22 8.42 179.05 1.51 20.73 16 7 O -0.62 -20.31 15.65 -3.98 -0.06 -20.37 16 8 N -0.54 -15.13 6.11 -184.75 -1.13 -16.26 16 9 N -0.51 -15.43 6.26 -173.53 -1.09 -16.52 16 10 C 0.52 19.48 7.95 87.66 0.70 20.17 16 11 O -0.58 -26.31 15.83 -3.03 -0.05 -26.36 16 12 C -0.11 -4.12 5.64 29.85 0.17 -3.95 16 13 C 0.04 2.31 4.26 29.85 0.13 2.44 16 14 C -0.54 -30.19 9.11 25.60 0.23 -29.95 16 15 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 16 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 17 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 18 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 22 C 0.11 1.63 6.52 86.50 0.56 2.19 16 23 C 0.04 0.57 5.64 86.54 0.49 1.06 16 24 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.08 0.60 8.08 -2.38 -0.02 0.58 16 26 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.11 0.98 8.11 -2.39 -0.02 0.96 16 29 H 0.09 1.66 7.04 -2.39 -0.02 1.65 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.43 11.31 5.66 -213.32 -1.21 10.11 16 32 H 0.44 11.82 8.01 -213.32 -1.71 10.11 16 33 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 34 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 35 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 36 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 37 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.28 5.84 -2.38 -0.01 1.26 16 40 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.11 1.05 8.06 -2.38 -0.02 1.03 16 Total: -1.00 -76.60 338.86 -2.36 -78.96 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -1.87 Total: 20.92 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 6.53 Total: 18.13 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -8.93 Total: -117.09 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -0.11 Total: -46.73 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -76.60 -2.36 -78.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293341589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.489 kcal (2) G-P(sol) polarization free energy of solvation -76.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds