Wall clock time and date at job start Tue Mar 31 2020 03:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00070 * 2 1 4 4 O 1.21583 * 119.99974 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00099 * 179.97438 * 3 2 1 6 6 C 1.46494 * 119.99987 * 180.02562 * 5 3 2 7 7 H 1.08996 * 110.78386 * 31.76331 * 6 5 3 8 8 C 1.55157 * 110.72298 * 155.00312 * 6 5 3 9 9 C 1.54908 * 101.58535 * 153.86378 * 8 6 5 10 10 N 1.47426 * 104.83187 * 322.99352 * 9 8 6 11 11 C 1.34774 * 125.64437 * 204.09221 * 10 9 8 12 12 O 1.21588 * 119.99464 * 180.02562 * 11 10 9 13 13 N 1.34777 * 120.00327 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99873 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46684 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.46573 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99430 * 20 18 16 22 22 H 1.48494 * 109.47031 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99678 * 20 18 16 24 24 C 1.47020 * 108.70082 * 24.35365 * 10 9 8 25 25 H 1.08997 * 109.47115 * 59.99424 * 1 2 3 26 26 H 1.09002 * 109.46834 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46758 * 299.99274 * 1 2 3 28 28 H 0.96999 * 119.99856 * 180.02562 * 2 1 3 29 29 H 0.96999 * 119.99827 * 0.02562 * 5 3 2 30 30 H 1.09005 * 111.00495 * 35.78914 * 8 6 5 31 31 H 1.09000 * 111.00179 * 271.93941 * 8 6 5 32 32 H 1.09005 * 110.36763 * 204.15152 * 9 8 6 33 33 H 1.09005 * 110.45800 * 81.87822 * 9 8 6 34 34 H 0.96999 * 120.00047 * 359.97438 * 13 11 10 35 35 H 1.09000 * 109.47212 * 59.99645 * 14 13 11 36 36 H 1.09001 * 109.46577 * 299.99570 * 14 13 11 37 37 H 1.09000 * 109.47486 * 59.99935 * 15 14 13 38 38 H 1.09001 * 109.47362 * 299.99212 * 15 14 13 39 39 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.88090 * 118.13563 * 24 10 9 41 41 H 1.09002 * 109.88154 * 239.29553 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2191 2.4359 0.0011 7 1 3.6620 3.2039 0.5375 8 6 5.6325 2.2536 0.6148 9 6 6.4195 3.3979 -0.0712 10 7 5.8819 3.4563 -1.4427 11 6 6.5272 3.9477 -2.5190 12 8 5.9839 3.9458 -3.6068 13 7 7.7747 4.4413 -2.3896 14 6 8.4759 4.9759 -3.5596 15 6 9.8628 5.4686 -3.1417 16 6 10.5844 6.0180 -4.3454 17 1 10.1037 6.0118 -5.3124 18 6 11.8602 6.5237 -4.2127 19 7 12.4900 7.0027 -5.2632 20 14 12.6946 6.5273 -2.5415 21 1 13.4459 5.2592 -2.3605 22 1 13.6333 7.6749 -2.4594 23 1 11.6676 6.6506 -1.4759 24 6 4.5228 2.8955 -1.4405 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.9500 -0.8400 -0.0004 29 1 3.9716 0.3271 0.0005 30 1 6.0495 1.2810 0.3533 31 1 5.6092 2.3889 1.6961 32 1 7.4847 3.1672 -0.0908 33 1 6.2460 4.3423 0.4448 34 1 8.2079 4.4431 -1.5218 35 1 7.9061 5.8063 -3.9767 36 1 8.5792 4.1926 -4.3105 37 1 10.4328 4.6385 -2.7244 38 1 9.7592 6.2520 -2.3910 39 1 13.3878 7.3582 -5.1700 40 1 3.8067 3.6579 -1.7473 41 1 4.4725 2.0429 -2.1178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342650836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:44 Heat of formation + Delta-G solvation = -54.160206 kcal Electronic energy + Delta-G solvation = -22001.246640 eV Core-core repulsion = 18530.379046 eV Total energy + Delta-G solvation = -3470.867594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64993 -39.77780 -37.74765 -34.94405 -34.89694 -34.46724 -32.75805 -31.01654 -29.93364 -28.74231 -26.69183 -24.91514 -23.34523 -21.71239 -21.16823 -20.75270 -19.75069 -19.05079 -18.00156 -17.04752 -16.85316 -16.15897 -15.70617 -15.49328 -14.94854 -14.71846 -14.49687 -14.19921 -13.81311 -13.67533 -13.61946 -13.20803 -12.94250 -12.65209 -12.58391 -12.49076 -12.21911 -11.94793 -11.46794 -11.22294 -11.18035 -10.58647 -10.37712 -10.24630 -9.97038 -9.79520 -9.68167 -9.32011 -9.28364 -8.79669 -8.60832 -8.29117 -6.09645 -4.09524 2.22065 2.79217 2.88431 3.25493 3.33019 3.34552 3.49708 3.84118 4.09299 4.18077 4.38575 4.45151 4.68112 4.78409 4.91415 5.02676 5.15008 5.23121 5.30739 5.39054 5.40324 5.60225 5.64316 5.74779 6.01291 6.03992 6.10306 6.26591 6.29104 6.48210 6.59784 6.82833 7.08987 7.25924 7.30247 7.58316 7.68743 8.22116 8.24681 8.46818 8.90011 8.95636 9.50339 11.03406 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045097 B = 0.002625 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.738087 B =10665.409628 C =11088.431061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.751 5.751 3 C 0.703 3.297 4 O -0.585 6.585 5 N -0.735 5.735 6 C 0.153 3.847 7 H 0.109 0.891 8 C -0.136 4.136 9 C 0.101 3.899 10 N -0.642 5.642 11 C 0.718 3.282 12 O -0.589 6.589 13 N -0.739 5.739 14 C 0.148 3.852 15 C -0.021 4.021 16 C -0.521 4.521 17 H 0.076 0.924 18 C 0.068 3.932 19 N -0.898 5.898 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.117 3.883 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.398 0.602 29 H 0.398 0.602 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.391 0.609 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.022 0.978 39 H 0.264 0.736 40 H 0.072 0.928 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.559 -16.938 17.919 30.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.407 5.407 3 C 0.402 3.598 4 O -0.462 6.462 5 N -0.390 5.390 6 C 0.046 3.954 7 H 0.127 0.873 8 C -0.175 4.175 9 C -0.023 4.023 10 N -0.382 5.382 11 C 0.420 3.580 12 O -0.467 6.467 13 N -0.393 5.393 14 C 0.025 3.975 15 C -0.059 4.059 16 C -0.560 4.560 17 H 0.094 0.906 18 C -0.134 4.134 19 N -0.537 5.537 20 Si 0.710 3.290 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.008 4.008 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.231 0.769 29 H 0.233 0.767 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.224 0.776 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.330 -15.809 16.928 30.168 hybrid contribution 1.276 -0.796 1.189 1.917 sum -18.054 -16.605 18.118 30.495 Atomic orbital electron populations 1.21410 0.77972 1.02014 1.02437 1.44916 1.07890 1.07098 1.80766 1.15981 0.81745 0.84386 0.77660 1.90962 1.67731 1.30254 1.57285 1.45016 1.04658 1.09136 1.80208 1.21815 0.92022 0.86021 0.95508 0.87297 1.23060 0.93897 0.99675 1.00879 1.22232 0.98799 0.98484 0.82807 1.47485 1.16745 1.66657 1.07356 1.15522 0.81412 0.78365 0.82739 1.90920 1.67666 1.63245 1.24851 1.45532 1.14571 1.65720 1.13517 1.21401 0.93039 0.97639 0.85407 1.19795 0.91465 0.96206 0.98424 1.20920 0.99916 1.40262 0.94882 0.90565 1.25009 0.97086 0.94634 0.96648 1.69909 1.13318 1.41073 1.29368 0.86739 0.79545 0.77788 0.84909 1.20276 1.21293 1.19095 1.22110 0.83150 0.98946 0.96607 0.92225 0.90642 0.92321 0.76944 0.76728 0.89888 0.88995 0.90249 0.90965 0.77584 0.92061 0.92135 0.96517 0.96003 0.92577 0.90975 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.57 10.70 59.85 0.64 1.21 16 2 N -0.75 -4.57 5.72 -72.07 -0.41 -4.98 16 3 C 0.70 6.76 8.57 -86.92 -0.74 6.02 16 4 O -0.59 -8.36 15.99 5.29 0.08 -8.27 16 5 N -0.74 -5.24 5.11 -56.88 -0.29 -5.53 16 6 C 0.15 1.30 3.31 -66.09 -0.22 1.08 16 7 H 0.11 1.06 7.55 -51.93 -0.39 0.67 16 8 C -0.14 -0.83 6.72 -24.58 -0.17 -1.00 16 9 C 0.10 0.88 6.57 -2.53 -0.02 0.86 16 10 N -0.64 -8.55 3.33 -176.23 -0.59 -9.14 16 11 C 0.72 12.96 8.49 -86.92 -0.74 12.22 16 12 O -0.59 -13.24 16.67 5.29 0.09 -13.15 16 13 N -0.74 -12.88 5.52 -65.22 -0.36 -13.24 16 14 C 0.15 3.12 5.61 -4.04 -0.02 3.10 16 15 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 16 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 17 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 20 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 24 C 0.12 1.43 6.63 -3.06 -0.02 1.41 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.40 1.12 8.84 -40.82 -0.36 0.76 16 29 H 0.40 1.64 8.58 -40.82 -0.35 1.29 16 30 H 0.08 0.43 8.01 -51.93 -0.42 0.02 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.63 7.30 -51.93 -0.38 0.25 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.39 5.65 6.95 -40.82 -0.28 5.37 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 38 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -37.75 341.85 -8.38 -46.14 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.33 Total: 2.20 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -1.83 Total: 11.12 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.88 Total: -59.55 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.17 Total: -21.42 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.75 -8.38 -46.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342650836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.023 kcal (2) G-P(sol) polarization free energy of solvation -37.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds