Wall clock time and date at job start Tue Mar 31 2020 02:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00446 * 2 1 4 4 H 1.09002 * 109.46984 * 330.00066 * 3 2 1 5 5 C 1.52997 * 109.46906 * 89.99887 * 3 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 3 8 8 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 9 9 H 1.08993 * 109.47194 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46907 * 59.99687 * 8 7 6 11 11 O 1.21279 * 120.00068 * 239.99984 * 10 8 7 12 12 N 1.34777 * 119.99769 * 60.00708 * 10 8 7 13 13 C 1.46496 * 120.00266 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.47317 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00342 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00033 * 179.97438 * 14 13 12 17 17 C 1.37100 * 120.00332 * 180.02562 * 16 14 13 18 18 H 1.07995 * 119.99325 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00074 * 180.02562 * 17 16 14 20 20 N 1.31405 * 119.99679 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00091 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47029 * 89.99969 * 21 19 17 23 23 H 1.48502 * 109.46888 * 209.99778 * 21 19 17 24 24 H 1.48502 * 109.47110 * 330.00111 * 21 19 17 25 25 C 1.53000 * 109.47231 * 209.99746 * 3 2 1 26 26 H 1.08998 * 109.47775 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47115 * 300.00419 * 1 2 3 28 28 H 1.09000 * 109.46923 * 59.99773 * 1 2 3 29 29 H 1.08996 * 109.47853 * 300.00254 * 5 3 2 30 30 H 1.09002 * 109.47153 * 60.00282 * 5 3 2 31 31 H 1.09000 * 109.47486 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 6 5 3 33 33 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 34 34 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 35 35 H 0.97008 * 120.00332 * 359.97438 * 12 10 8 36 36 H 1.09000 * 109.46684 * 299.99693 * 13 12 10 37 37 H 1.08996 * 109.47366 * 59.99254 * 13 12 10 38 38 H 0.97004 * 119.99471 * 359.97438 * 16 14 13 39 39 H 0.97002 * 119.99871 * 179.97438 * 20 19 17 40 40 H 1.08992 * 109.47399 * 300.00058 * 25 3 2 41 41 H 1.09004 * 109.46724 * 60.00544 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7712 1.4425 6 6 2.8407 3.1686 1.4426 7 6 4.1895 3.1258 0.7215 8 6 3.9820 2.6599 -0.7210 9 1 4.9428 2.6299 -1.2348 10 6 3.0627 3.6197 -1.4316 11 8 2.0127 3.2249 -1.8926 12 7 3.4075 4.9168 -1.5547 13 6 2.5141 5.8498 -2.2459 14 6 3.1274 7.2263 -2.2453 15 8 4.2050 7.4100 -1.7196 16 7 2.4790 8.2532 -2.8297 17 6 3.0372 9.5055 -2.8296 18 1 3.9962 9.6691 -2.3609 19 6 2.3684 10.5642 -3.4317 20 7 2.9032 11.7645 -3.4311 21 14 0.7092 10.2813 -4.2418 22 1 -0.3708 10.4911 -3.2444 23 1 0.5377 11.2369 -5.3655 24 1 0.6417 8.8910 -4.7595 25 6 3.3590 1.2631 -0.7212 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.2570 1.8014 1.9564 30 1 2.8829 1.0773 1.9563 31 1 2.9889 3.5004 2.4703 32 1 2.1758 3.8628 0.9286 33 1 4.8543 2.4316 1.2354 34 1 4.6330 4.1215 0.7212 35 1 4.2472 5.2327 -1.1857 36 1 2.3668 5.5177 -3.2736 37 1 1.5531 5.8803 -1.7327 38 1 1.6178 8.1061 -3.2510 39 1 2.4365 12.5036 -3.8517 40 1 4.0242 0.5692 -0.2074 41 1 3.2111 0.9312 -1.7489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354390063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:23 Heat of formation + Delta-G solvation = -157.302150 kcal Electronic energy + Delta-G solvation = -22928.154922 eV Core-core repulsion = 19420.522007 eV Total energy + Delta-G solvation = -3507.632916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71958 -40.39509 -39.13671 -37.06364 -36.30349 -35.35685 -33.84642 -32.12619 -31.09032 -29.31087 -27.31769 -26.41826 -24.18264 -23.33736 -22.09639 -21.47594 -20.83051 -20.22069 -18.09540 -17.87226 -17.34250 -16.93302 -16.71358 -16.55872 -16.52080 -16.03479 -15.56104 -15.43428 -15.07709 -14.85466 -14.47492 -14.29751 -14.01834 -13.97991 -13.63497 -13.22441 -13.12714 -13.01756 -12.96907 -12.57181 -12.46032 -12.01860 -11.95608 -11.81053 -11.59277 -11.46240 -11.39260 -10.66924 -10.59735 -10.38803 -10.33412 -10.08727 -8.46721 -6.08636 1.29644 1.32536 1.42440 1.59946 1.79062 2.03968 2.19213 2.81292 2.87542 3.09637 3.65462 3.74099 3.78251 3.97959 4.11903 4.19658 4.23940 4.36281 4.39704 4.43139 4.48492 4.53439 4.54586 4.64554 4.70715 4.82278 4.95561 5.04682 5.09207 5.13469 5.23445 5.25702 5.34183 5.41136 5.48095 5.87403 6.31643 6.46891 6.52682 6.77369 7.17549 7.29367 7.76961 8.69780 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028013 B = 0.003486 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.307165 B = 8029.930938 C = 8546.990883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.404 6.404 3 C 0.071 3.929 4 H 0.068 0.932 5 C -0.134 4.134 6 C -0.121 4.121 7 C -0.111 4.111 8 C -0.099 4.099 9 H 0.128 0.872 10 C 0.517 3.483 11 O -0.573 6.573 12 N -0.709 5.709 13 C 0.117 3.883 14 C 0.445 3.555 15 O -0.613 6.613 16 N -0.579 5.579 17 C -0.331 4.331 18 H 0.064 0.936 19 C -0.007 4.007 20 N -0.926 5.926 21 Si 0.958 3.042 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.234 1.234 25 C -0.091 4.091 26 H 0.100 0.900 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.413 0.587 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.391 0.609 39 H 0.281 0.719 40 H 0.095 0.905 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 -22.034 6.811 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.324 6.324 3 C 0.014 3.986 4 H 0.086 0.914 5 C -0.171 4.171 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.120 4.120 9 H 0.145 0.855 10 C 0.306 3.694 11 O -0.453 6.453 12 N -0.363 5.363 13 C -0.011 4.011 14 C 0.233 3.767 15 O -0.498 6.498 16 N -0.219 5.219 17 C -0.460 4.460 18 H 0.082 0.918 19 C -0.207 4.207 20 N -0.566 5.566 21 Si 0.778 3.222 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.157 1.157 25 C -0.129 4.129 26 H 0.119 0.881 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.227 0.773 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.988 -22.100 6.771 23.456 hybrid contribution -0.707 1.131 -0.506 1.427 sum -4.695 -20.969 6.264 22.383 Atomic orbital electron populations 1.22867 0.80425 1.03446 1.00004 1.87786 1.20631 1.28751 1.95219 1.22510 0.95888 0.84348 0.95832 0.91400 1.21990 1.01419 0.97117 0.96620 1.21535 0.96519 0.96178 1.01607 1.21631 0.97945 1.03044 0.92282 1.21405 0.99500 0.93126 0.97928 0.85461 1.21180 0.87145 0.82208 0.78893 1.90606 1.26414 1.77787 1.50472 1.45801 1.24418 1.08167 1.57901 1.20855 0.94219 0.85900 1.00088 1.20520 0.86575 0.86943 0.82694 1.90526 1.24064 1.84935 1.50320 1.41949 1.20711 1.07732 1.51493 1.19034 1.05592 0.84547 1.36858 0.91774 1.26051 1.03244 0.94003 0.97448 1.69776 1.41089 1.01322 1.44370 0.85456 0.77393 0.80367 0.78967 1.18095 1.19816 1.15713 1.21312 0.95473 0.94989 1.01077 0.88119 0.93695 0.94698 0.92224 0.90121 0.89858 0.94114 0.87854 0.90711 0.74825 0.88085 0.88126 0.77307 0.90911 0.88655 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.82 113.37 1.23 1.77 16 2 O -0.40 -9.55 10.35 -148.98 -1.54 -11.09 16 3 C 0.07 1.63 2.32 30.59 0.07 1.70 16 4 H 0.07 1.90 5.16 -2.39 -0.01 1.89 16 5 C -0.13 -2.51 5.54 30.59 0.17 -2.34 16 6 C -0.12 -2.24 5.70 30.60 0.17 -2.07 16 7 C -0.11 -1.80 5.36 30.60 0.16 -1.63 16 8 C -0.10 -1.87 3.01 -11.56 -0.03 -1.90 16 9 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 10 C 0.52 13.70 5.64 87.66 0.49 14.20 16 11 O -0.57 -18.30 13.66 -3.03 -0.04 -18.34 16 12 N -0.71 -20.27 5.42 -466.80 -2.53 -22.80 16 13 C 0.12 3.71 6.15 85.63 0.53 4.23 16 14 C 0.45 18.94 7.85 87.66 0.69 19.63 16 15 O -0.61 -30.76 15.24 -3.06 -0.05 -30.81 16 16 N -0.58 -26.23 5.09 -306.99 -1.56 -27.79 16 17 C -0.33 -18.61 10.16 84.04 0.85 -17.76 16 18 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 19 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 20 N -0.93 -54.04 13.96 21.66 0.30 -53.74 16 21 Si 0.96 37.77 27.74 68.60 1.90 39.68 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.23 -7.87 6.52 99.48 0.65 -7.23 16 25 C -0.09 -1.82 4.74 30.58 0.14 -1.67 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.04 0.76 7.87 -2.39 -0.02 0.74 16 28 H 0.03 0.70 8.08 -2.39 -0.02 0.68 16 29 H 0.06 1.12 7.87 -2.39 -0.02 1.10 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 0.94 7.22 -2.39 -0.02 0.93 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.25 7.56 -2.39 -0.02 1.23 16 35 H 0.41 11.86 6.85 -92.70 -0.64 11.22 16 36 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.39 14.91 5.76 -92.71 -0.53 14.37 16 39 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 Total: -1.00 -71.72 330.28 1.25 -70.47 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: -0.18 Total: 40.21 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 4.95 Total: 14.22 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -3.79 Total: -104.34 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -1.63 Total: -60.24 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.90 Total: 39.68 kcal Total: -71.72 1.25 -70.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354390063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.836 kcal (2) G-P(sol) polarization free energy of solvation -71.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds