Wall clock time and date at job start Tue Mar 31 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47184 * 2 1 4 4 C 1.53006 * 109.47145 * 299.99689 * 3 2 1 5 5 C 1.52994 * 109.47428 * 59.99738 * 3 2 1 6 6 N 1.46901 * 109.47314 * 180.02562 * 3 2 1 7 7 C 1.46896 * 111.00308 * 175.62926 * 6 3 2 8 8 H 1.09004 * 109.47240 * 10.82005 * 7 6 3 9 9 C 1.53007 * 109.46987 * 250.82344 * 7 6 3 10 10 C 1.50700 * 109.47288 * 130.82278 * 7 6 3 11 11 O 1.21280 * 120.00084 * 25.25605 * 10 7 6 12 12 N 1.34777 * 120.00014 * 205.25470 * 10 7 6 13 13 C 1.47072 * 136.05846 * 184.75477 * 12 10 7 14 14 C 1.53238 * 88.08397 * 207.20657 * 13 12 10 15 15 O 1.42900 * 114.19416 * 87.72551 * 14 13 12 16 16 C 1.50697 * 114.32837 * 220.47335 * 14 13 12 17 17 H 1.07991 * 120.00390 * 93.75585 * 16 14 13 18 18 C 1.37879 * 119.99644 * 273.76052 * 16 14 13 19 19 N 1.31518 * 120.00119 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99971 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46970 * 60.00006 * 20 18 16 22 22 H 1.48498 * 109.47330 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47263 * 300.00096 * 20 18 16 24 24 C 1.47068 * 136.05600 * 5.13177 * 12 10 7 25 25 H 1.09003 * 109.47511 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47220 * 300.00286 * 1 2 3 27 27 H 1.09005 * 109.47064 * 60.00372 * 1 2 3 28 28 H 1.09000 * 109.47220 * 239.99714 * 2 1 3 29 29 H 1.08996 * 109.47134 * 119.99763 * 2 1 3 30 30 H 1.08997 * 109.46833 * 54.83589 * 4 3 2 31 31 H 1.08998 * 109.47033 * 174.83559 * 4 3 2 32 32 H 1.08994 * 109.46947 * 294.83851 * 4 3 2 33 33 H 1.09001 * 109.46939 * 61.22078 * 5 3 2 34 34 H 1.08995 * 109.47548 * 181.21793 * 5 3 2 35 35 H 1.09000 * 109.47235 * 301.22019 * 5 3 2 36 36 H 1.00901 * 110.99890 * 51.66701 * 6 3 2 37 37 H 1.08994 * 109.47028 * 304.14500 * 9 7 6 38 38 H 1.08996 * 109.46718 * 64.14352 * 9 7 6 39 39 H 1.08998 * 109.47141 * 184.14534 * 9 7 6 40 40 H 1.08997 * 113.46477 * 321.94348 * 13 12 10 41 41 H 1.09004 * 113.46045 * 92.37727 * 13 12 10 42 42 H 0.96696 * 113.99890 * 86.30866 * 15 14 13 43 43 H 0.97000 * 120.00082 * 179.97438 * 19 18 16 44 44 H 1.09004 * 113.46768 * 267.62147 * 24 12 10 45 45 H 1.09000 * 113.47087 * 38.00336 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 1.5300 2.1638 1.2491 6 7 3.5090 1.4425 -0.0006 7 6 4.0354 2.8099 -0.1051 8 1 3.2234 3.5235 0.0342 9 6 4.6600 3.0116 -1.4873 10 6 5.0830 3.0274 0.9561 11 8 5.6935 2.0820 1.4084 12 7 5.3416 4.2725 1.4026 13 6 6.3074 4.8871 2.3259 14 6 5.2767 5.9904 2.5880 15 8 4.3541 5.6925 3.6378 16 6 5.8613 7.3760 2.6839 17 1 5.9007 8.0073 1.8087 18 6 6.3459 7.8378 3.8894 19 7 6.2975 7.0691 4.9554 20 14 7.0712 9.5550 4.0083 21 1 6.0408 10.5549 3.6291 22 1 7.5172 9.8087 5.4018 23 1 8.2316 9.6671 3.0885 24 6 4.7779 5.6135 1.1860 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.4440 2.0843 -1.2968 31 1 1.8159 3.2146 -1.2043 32 1 1.9670 1.7060 -2.1368 33 1 1.9111 1.6627 2.1390 34 1 1.8754 3.1975 1.2383 35 1 0.4402 2.1449 1.2601 36 1 3.8703 0.8583 -0.7398 37 1 5.4224 2.2512 -1.6560 38 1 3.8871 2.9270 -2.2511 39 1 5.1155 4.0005 -1.5393 40 1 6.5190 4.2756 3.2030 41 1 7.2112 5.2455 1.8332 42 1 4.6712 5.9312 4.5195 43 1 6.6388 7.3938 5.8034 44 1 5.2702 6.1674 0.3867 45 1 3.6917 5.6182 1.0949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356558756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:52 Heat of formation + Delta-G solvation = -72.457791 kcal Electronic energy + Delta-G solvation = -23960.648862 eV Core-core repulsion = 20592.528168 eV Total energy + Delta-G solvation = -3368.120694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40854 -40.02879 -38.66019 -35.86497 -35.05930 -34.12118 -31.29323 -30.28966 -29.30639 -28.31046 -27.31017 -26.83634 -25.31846 -23.79240 -21.66982 -19.91288 -19.87997 -19.19490 -18.19800 -17.27426 -17.00104 -16.56427 -16.26194 -15.97196 -15.71838 -15.39455 -14.97488 -14.74768 -14.41522 -14.35502 -14.25736 -13.73926 -13.56460 -13.41541 -13.26096 -13.16659 -12.99253 -12.76131 -12.74513 -12.71977 -12.28035 -12.22528 -12.16828 -12.15119 -12.01674 -11.60484 -11.41608 -11.34611 -10.80063 -10.56748 -10.26910 -9.52355 -9.31464 -8.26391 -6.45265 1.49003 1.49499 1.58084 1.74612 1.96252 2.40438 2.95776 3.12133 3.55264 3.76728 3.77853 3.98581 4.03296 4.07800 4.19655 4.21904 4.45774 4.47954 4.55136 4.59519 4.61541 4.68477 4.72977 4.73895 4.78718 4.84356 4.93122 4.96415 5.01287 5.04050 5.13069 5.15200 5.22187 5.24336 5.24895 5.46862 5.50314 5.72980 5.89632 6.07323 6.50148 6.62467 6.98915 7.29043 7.31689 7.45441 8.79331 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.029419 B = 0.003919 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.538461 B = 7142.306125 C = 7356.735570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.110 3.890 4 C -0.179 4.179 5 C -0.141 4.141 6 N -0.678 5.678 7 C 0.086 3.914 8 H 0.097 0.903 9 C -0.158 4.158 10 C 0.531 3.469 11 O -0.590 6.590 12 N -0.641 5.641 13 C 0.078 3.922 14 C 0.218 3.782 15 O -0.586 6.586 16 C -0.551 4.551 17 H 0.084 0.916 18 C 0.025 3.975 19 N -0.924 5.924 20 Si 0.975 3.025 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.117 3.883 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.353 0.647 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.084 0.916 42 H 0.387 0.613 43 H 0.275 0.725 44 H 0.113 0.887 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.935 -6.356 -14.220 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C 0.020 3.980 4 C -0.237 4.237 5 C -0.199 4.199 6 N -0.311 5.311 7 C -0.027 4.027 8 H 0.115 0.885 9 C -0.216 4.216 10 C 0.321 3.679 11 O -0.470 6.470 12 N -0.375 5.375 13 C -0.046 4.046 14 C 0.177 3.823 15 O -0.399 6.399 16 C -0.589 4.589 17 H 0.102 0.898 18 C -0.175 4.175 19 N -0.565 5.565 20 Si 0.799 3.201 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.192 1.192 24 C -0.005 4.005 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.174 0.826 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.102 0.898 42 H 0.242 0.758 43 H 0.085 0.915 44 H 0.131 0.869 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.933 -7.343 -13.680 18.431 hybrid contribution 1.067 1.007 0.513 1.554 sum -8.866 -6.336 -13.167 17.092 Atomic orbital electron populations 1.21882 0.94034 1.02366 1.02513 1.21472 0.96922 0.93948 1.02166 1.21082 0.85392 0.96639 0.94885 1.22658 1.03229 1.00491 0.97340 1.21964 1.01665 0.99026 0.97206 1.60004 1.07776 1.08950 1.54396 1.21275 0.95375 0.92951 0.93138 0.88532 1.22264 1.02264 1.03256 0.93865 1.21212 0.84224 0.79788 0.82668 1.90575 1.54284 1.41509 1.60674 1.49851 1.35793 1.06226 1.45625 1.23926 0.95671 0.94050 0.90974 1.19817 0.85933 0.91103 0.85493 1.85993 1.46212 1.86917 1.20742 1.21721 1.40409 0.99811 0.96916 0.89785 1.25904 0.94750 1.01820 0.95016 1.69371 1.47296 1.38524 1.01338 0.85346 0.78851 0.78788 0.77096 1.19153 1.21313 1.19186 1.23326 0.99581 0.79563 0.98037 0.91850 0.92711 0.91162 0.90897 0.93047 0.90193 0.92721 0.91189 0.94654 0.94405 0.89811 0.82562 0.91906 0.88403 0.91330 0.95575 0.89810 0.75770 0.91548 0.86876 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.22 71.98 0.66 -1.53 16 2 C -0.11 -2.01 5.20 30.59 0.16 -1.85 16 3 C 0.11 2.42 0.73 3.53 0.00 2.42 16 4 C -0.18 -2.90 7.16 71.98 0.52 -2.39 16 5 C -0.14 -3.72 8.08 71.98 0.58 -3.14 16 6 N -0.68 -18.73 5.62 -452.09 -2.54 -21.27 16 7 C 0.09 2.54 1.88 44.17 0.08 2.63 16 8 H 0.10 2.77 4.63 -2.39 -0.01 2.76 16 9 C -0.16 -3.50 8.93 71.98 0.64 -2.86 16 10 C 0.53 22.33 7.29 87.66 0.64 22.97 16 11 O -0.59 -29.89 17.40 -3.03 -0.05 -29.94 16 12 N -0.64 -27.72 3.69 -859.16 -3.17 -30.89 16 13 C 0.08 3.79 8.02 83.10 0.67 4.45 16 14 C 0.22 10.63 1.57 -11.29 -0.02 10.61 16 15 O -0.59 -31.60 13.54 -148.98 -2.02 -33.61 16 16 C -0.55 -27.31 8.69 25.60 0.22 -27.09 16 17 H 0.08 3.86 7.81 -2.92 -0.02 3.83 16 18 C 0.02 1.25 5.39 84.65 0.46 1.70 16 19 N -0.92 -49.11 11.01 21.45 0.24 -48.87 16 20 Si 0.97 39.56 29.54 68.60 2.03 41.59 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 24 C 0.12 4.58 7.74 83.19 0.64 5.22 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.86 6.40 -2.39 -0.02 0.84 16 27 H 0.07 0.84 6.32 -2.38 -0.02 0.82 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.08 6.17 -2.39 -0.01 1.07 16 31 H 0.05 0.95 6.44 -2.39 -0.02 0.94 16 32 H 0.07 0.94 7.86 -2.39 -0.02 0.92 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 1.12 6.48 -2.39 -0.02 1.10 16 35 H 0.08 1.76 6.36 -2.39 -0.02 1.75 16 36 H 0.35 8.44 8.07 -89.69 -0.72 7.71 16 37 H 0.06 1.44 8.09 -2.39 -0.02 1.42 16 38 H 0.10 1.54 6.98 -2.39 -0.02 1.52 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 3.87 8.10 -2.39 -0.02 3.85 16 42 H 0.39 21.67 6.32 -74.06 -0.47 21.20 16 43 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.11 3.76 8.10 -2.38 -0.02 3.74 16 45 H 0.08 2.78 8.12 -2.39 -0.02 2.76 16 Total: -1.00 -65.46 351.44 -0.46 -65.92 By element: Atomic # 1 Polarization: 46.12 SS G_CDS: -0.20 Total: 45.92 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 5.26 Total: 11.15 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -5.48 Total: -101.03 kcal Atomic # 8 Polarization: -61.48 SS G_CDS: -2.07 Total: -63.55 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -65.46 -0.46 -65.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356558756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.537 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds