Wall clock time and date at job start Tue Mar 31 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47047 * 2 1 4 4 C 1.52997 * 109.47474 * 185.27282 * 3 2 1 5 5 H 1.08995 * 109.47334 * 175.13413 * 4 3 2 6 6 N 1.46899 * 109.47219 * 295.13656 * 4 3 2 7 7 C 1.46902 * 110.99664 * 273.95348 * 6 4 3 8 8 C 1.52999 * 109.47215 * 153.81810 * 7 6 4 9 9 C 1.53003 * 109.47043 * 273.81700 * 7 6 4 10 10 C 1.50705 * 109.47051 * 55.13287 * 4 3 2 11 11 O 1.21281 * 119.99827 * 240.00220 * 10 4 3 12 12 N 1.34780 * 120.00019 * 59.99965 * 10 4 3 13 13 C 1.47576 * 134.49367 * 180.02562 * 12 10 4 14 14 C 1.53942 * 86.11725 * 204.65740 * 13 12 10 15 15 O 1.42906 * 113.73843 * 90.73876 * 14 13 12 16 16 C 1.50699 * 113.74169 * 221.93813 * 14 13 12 17 17 H 1.08002 * 120.00377 * 358.07915 * 16 14 13 18 18 C 1.37874 * 119.99741 * 178.07517 * 16 14 13 19 19 N 1.31511 * 120.00247 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00114 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47192 * 59.99941 * 20 18 16 22 22 H 1.48496 * 109.47422 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47131 * 300.00663 * 20 18 16 24 24 C 1.47927 * 134.49854 * 0.03033 * 12 10 4 25 25 H 1.09001 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47609 * 300.00025 * 1 2 3 27 27 H 1.09001 * 109.47142 * 60.00548 * 1 2 3 28 28 H 1.08997 * 109.47609 * 239.99975 * 2 1 3 29 29 H 1.09001 * 109.47142 * 119.99451 * 2 1 3 30 30 H 1.08999 * 109.46962 * 65.26809 * 3 2 1 31 31 H 1.08995 * 109.46827 * 305.27518 * 3 2 1 32 32 H 1.00902 * 111.00058 * 37.90299 * 6 4 3 33 33 H 1.08998 * 109.47134 * 33.81962 * 7 6 4 34 34 H 1.09006 * 109.47187 * 59.99789 * 8 7 6 35 35 H 1.08995 * 109.47331 * 179.97438 * 8 7 6 36 36 H 1.08997 * 109.47189 * 300.00059 * 8 7 6 37 37 H 1.09006 * 109.47046 * 300.00020 * 9 7 6 38 38 H 1.09007 * 109.47068 * 60.00008 * 9 7 6 39 39 H 1.08999 * 109.47425 * 179.97438 * 9 7 6 40 40 H 1.09004 * 113.77101 * 90.35411 * 13 12 10 41 41 H 1.09002 * 113.86827 * 318.97543 * 13 12 10 42 42 H 0.96699 * 113.99628 * 181.92486 * 15 14 13 43 43 H 0.97003 * 120.00400 * 180.02562 * 19 18 16 44 44 H 1.08994 * 113.87027 * 41.07551 * 24 12 10 45 45 H 1.09003 * 113.76554 * 269.58173 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5642 1.4447 -0.1326 5 1 3.9199 2.4713 -0.2195 6 7 4.1599 0.8190 1.0555 7 6 4.3389 1.8006 2.1336 8 6 4.3213 1.0831 3.4848 9 6 5.6790 2.5168 1.9539 10 6 3.9626 0.6692 -1.3618 11 8 4.6728 -0.3084 -1.2583 12 7 3.5296 1.0621 -2.5762 13 6 3.7135 0.5607 -3.9519 14 6 3.4200 2.0024 -4.4048 15 8 4.5879 2.8176 -4.5221 16 6 2.5202 2.0882 -5.6106 17 1 2.1720 1.1853 -6.0900 18 6 2.1413 3.3196 -6.1017 19 7 2.5656 4.4192 -5.5183 20 14 1.0253 3.4261 -7.5959 21 1 -0.2616 2.7457 -7.3021 22 1 0.7687 4.8520 -7.9215 23 1 1.6819 2.7651 -8.7523 24 6 2.6791 2.1692 -3.0655 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.7557 1.9284 0.9334 31 1 1.6015 1.9829 -0.8389 32 1 3.6058 0.0358 1.3680 33 1 3.5297 2.5300 2.0990 34 1 5.1306 0.3537 3.5195 35 1 4.4546 1.8114 4.2847 36 1 3.3667 0.5729 3.6128 37 1 6.4883 1.7874 1.9886 38 1 5.6916 3.0280 0.9912 39 1 5.8117 3.2455 2.7536 40 1 2.9566 -0.1599 -4.2618 41 1 4.7294 0.2302 -4.1687 42 1 4.4051 3.7320 -4.7779 43 1 2.2988 5.2855 -5.8635 44 1 2.8701 3.1228 -2.5734 45 1 1.6192 1.9197 -3.1158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356577995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:53 Heat of formation + Delta-G solvation = -63.887218 kcal Electronic energy + Delta-G solvation = -24056.162640 eV Core-core repulsion = 20688.413595 eV Total energy + Delta-G solvation = -3367.749046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.81588 -38.10237 -36.55209 -34.73932 -33.83786 -32.21058 -31.39737 -28.86128 -27.42739 -27.15146 -25.42519 -25.22374 -23.54469 -21.78095 -20.35187 -19.54512 -18.18640 -17.28226 -16.30572 -16.02016 -15.72417 -15.19934 -14.89883 -14.58901 -14.27316 -14.12279 -14.04949 -13.39030 -13.00774 -12.83627 -12.63066 -12.37709 -12.26617 -12.12530 -12.04215 -11.82062 -11.56726 -11.53496 -11.42613 -11.19021 -11.06228 -11.02890 -10.98544 -10.66791 -10.53632 -10.52139 -10.27580 -9.51896 -9.08566 -8.75420 -8.39879 -8.18669 -7.73584 -6.38345 -4.48627 3.16000 3.22018 3.24281 3.35680 3.49869 4.18349 4.30466 4.79440 4.85707 4.86538 4.93460 4.98920 5.04561 5.21121 5.27228 5.52158 5.56283 5.59798 5.61526 5.72076 5.75910 5.79962 5.81776 5.86675 5.93665 6.01445 6.08084 6.13823 6.23431 6.24773 6.32203 6.34774 6.42920 6.54347 6.66208 6.71831 7.09423 7.15916 7.49159 7.63576 7.84216 8.54265 8.59939 8.95495 9.22683 9.44525 10.68120 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.004567 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.396638 B = 6129.819707 C = 6555.333870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.147 4.147 4 C 0.077 3.923 5 H 0.098 0.902 6 N -0.662 5.662 7 C 0.078 3.922 8 C -0.153 4.153 9 C -0.141 4.141 10 C 0.538 3.462 11 O -0.546 6.546 12 N -0.635 5.635 13 C 0.113 3.887 14 C 0.239 3.761 15 O -0.572 6.572 16 C -0.537 4.537 17 H 0.070 0.930 18 C 0.073 3.927 19 N -0.899 5.899 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.081 3.919 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.344 0.656 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.391 0.609 43 H 0.273 0.727 44 H 0.065 0.935 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -1.979 12.932 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.186 4.186 4 C -0.037 4.037 5 H 0.116 0.884 6 N -0.295 5.295 7 C -0.031 4.031 8 C -0.210 4.210 9 C -0.199 4.199 10 C 0.326 3.674 11 O -0.424 6.424 12 N -0.370 5.370 13 C -0.009 4.009 14 C 0.197 3.803 15 O -0.384 6.384 16 C -0.576 4.576 17 H 0.088 0.912 18 C -0.129 4.129 19 N -0.539 5.539 20 Si 0.733 3.267 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.042 4.042 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.165 0.835 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.245 0.755 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.791 -2.843 13.132 13.555 hybrid contribution -1.919 0.916 -0.599 2.209 sum -3.711 -1.927 12.533 13.212 Atomic orbital electron populations 1.21732 0.95501 1.01531 1.01795 1.21526 0.96127 0.96325 1.02277 1.22260 0.95211 0.98041 1.03098 1.21443 0.93041 0.98803 0.90372 0.88438 1.60195 1.54951 1.09771 1.04565 1.21528 0.97585 0.93631 0.90364 1.21961 1.02093 1.00889 0.96096 1.21818 0.97074 0.99776 1.01221 1.19907 0.80262 0.84445 0.82763 1.90621 1.38335 1.27774 1.85703 1.50224 1.50098 1.31589 1.05079 1.23378 1.00938 0.98444 0.78135 1.19850 0.83540 0.86265 0.90654 1.86072 1.32525 1.27895 1.91885 1.21486 1.29420 0.93302 1.13353 0.91187 1.25047 0.95555 0.95341 0.96987 1.69393 1.45452 0.98119 1.40908 0.86425 0.80667 0.77209 0.82427 1.19933 1.21031 1.19862 1.24279 0.95123 0.88228 0.96550 0.92825 0.93061 0.92337 0.91390 0.92339 0.91547 0.90103 0.83459 0.93884 0.91645 0.91993 0.92915 0.91889 0.92713 0.92829 0.89952 0.91327 0.75482 0.91690 0.91633 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.64 5.42 -26.73 -0.14 -1.79 16 3 C -0.15 -1.98 4.89 -26.73 -0.13 -2.11 16 4 C 0.08 1.23 2.39 -68.86 -0.16 1.06 16 5 H 0.10 1.59 7.20 -51.93 -0.37 1.21 16 6 N -0.66 -9.65 5.55 -100.95 -0.56 -10.21 16 7 C 0.08 0.92 3.01 -67.71 -0.20 0.72 16 8 C -0.15 -1.45 9.17 37.16 0.34 -1.11 16 9 C -0.14 -1.70 9.41 37.16 0.35 -1.35 16 10 C 0.54 10.94 5.87 -10.98 -0.06 10.87 16 11 O -0.55 -12.85 17.16 5.56 0.10 -12.75 16 12 N -0.63 -13.26 3.57 -178.02 -0.64 -13.89 16 13 C 0.11 2.48 8.22 -2.97 -0.02 2.46 16 14 C 0.24 5.66 1.40 -90.84 -0.13 5.53 16 15 O -0.57 -14.67 13.49 -35.23 -0.48 -15.15 16 16 C -0.54 -13.34 8.61 -34.44 -0.30 -13.63 16 17 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 19 N -0.90 -22.43 11.20 55.43 0.62 -21.81 16 20 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C 0.08 1.69 6.33 -2.77 -0.02 1.68 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.09 6.88 -51.93 -0.36 0.73 16 29 H 0.06 0.71 6.63 -51.93 -0.34 0.37 16 30 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 31 H 0.08 1.17 6.34 -51.93 -0.33 0.84 16 32 H 0.34 4.75 6.22 -39.29 -0.24 4.51 16 33 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.74 7.53 -51.93 -0.39 0.35 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 41 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 42 H 0.39 10.05 6.60 45.56 0.30 10.35 16 43 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.08 1.58 7.99 -51.93 -0.41 1.17 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -27.87 357.52 -7.91 -35.77 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -7.11 Total: 15.69 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.21 Total: 2.73 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.58 Total: -45.91 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.38 Total: -27.90 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.87 -7.91 -35.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356577995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.114 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds