Wall clock time and date at job start Tue Mar 31 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47047 * 2 1 4 4 C 1.52997 * 109.47474 * 185.27282 * 3 2 1 5 5 H 1.08995 * 109.47334 * 175.13413 * 4 3 2 6 6 N 1.46899 * 109.47219 * 295.13656 * 4 3 2 7 7 C 1.46902 * 110.99664 * 273.95348 * 6 4 3 8 8 C 1.52999 * 109.47215 * 153.81810 * 7 6 4 9 9 C 1.53003 * 109.47043 * 273.81700 * 7 6 4 10 10 C 1.50705 * 109.47051 * 55.13287 * 4 3 2 11 11 O 1.21281 * 119.99827 * 240.00220 * 10 4 3 12 12 N 1.34780 * 120.00019 * 59.99965 * 10 4 3 13 13 C 1.47576 * 134.49367 * 180.02562 * 12 10 4 14 14 C 1.53942 * 86.11725 * 204.65740 * 13 12 10 15 15 O 1.42906 * 113.73843 * 90.73876 * 14 13 12 16 16 C 1.50699 * 113.74169 * 221.93813 * 14 13 12 17 17 H 1.08002 * 120.00377 * 358.07915 * 16 14 13 18 18 C 1.37874 * 119.99741 * 178.07517 * 16 14 13 19 19 N 1.31511 * 120.00247 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00114 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47192 * 59.99941 * 20 18 16 22 22 H 1.48496 * 109.47422 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47131 * 300.00663 * 20 18 16 24 24 C 1.47927 * 134.49854 * 0.03033 * 12 10 4 25 25 H 1.09001 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47609 * 300.00025 * 1 2 3 27 27 H 1.09001 * 109.47142 * 60.00548 * 1 2 3 28 28 H 1.08997 * 109.47609 * 239.99975 * 2 1 3 29 29 H 1.09001 * 109.47142 * 119.99451 * 2 1 3 30 30 H 1.08999 * 109.46962 * 65.26809 * 3 2 1 31 31 H 1.08995 * 109.46827 * 305.27518 * 3 2 1 32 32 H 1.00902 * 111.00058 * 37.90299 * 6 4 3 33 33 H 1.08998 * 109.47134 * 33.81962 * 7 6 4 34 34 H 1.09006 * 109.47187 * 59.99789 * 8 7 6 35 35 H 1.08995 * 109.47331 * 179.97438 * 8 7 6 36 36 H 1.08997 * 109.47189 * 300.00059 * 8 7 6 37 37 H 1.09006 * 109.47046 * 300.00020 * 9 7 6 38 38 H 1.09007 * 109.47068 * 60.00008 * 9 7 6 39 39 H 1.08999 * 109.47425 * 179.97438 * 9 7 6 40 40 H 1.09004 * 113.77101 * 90.35411 * 13 12 10 41 41 H 1.09002 * 113.86827 * 318.97543 * 13 12 10 42 42 H 0.96699 * 113.99628 * 181.92486 * 15 14 13 43 43 H 0.97003 * 120.00400 * 180.02562 * 19 18 16 44 44 H 1.08994 * 113.87027 * 41.07551 * 24 12 10 45 45 H 1.09003 * 113.76554 * 269.58173 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5642 1.4447 -0.1326 5 1 3.9199 2.4713 -0.2195 6 7 4.1599 0.8190 1.0555 7 6 4.3389 1.8006 2.1336 8 6 4.3213 1.0831 3.4848 9 6 5.6790 2.5168 1.9539 10 6 3.9626 0.6692 -1.3618 11 8 4.6728 -0.3084 -1.2583 12 7 3.5296 1.0621 -2.5762 13 6 3.7135 0.5607 -3.9519 14 6 3.4200 2.0024 -4.4048 15 8 4.5879 2.8176 -4.5221 16 6 2.5202 2.0882 -5.6106 17 1 2.1720 1.1853 -6.0900 18 6 2.1413 3.3196 -6.1017 19 7 2.5656 4.4192 -5.5183 20 14 1.0253 3.4261 -7.5959 21 1 -0.2616 2.7457 -7.3021 22 1 0.7687 4.8520 -7.9215 23 1 1.6819 2.7651 -8.7523 24 6 2.6791 2.1692 -3.0655 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.7557 1.9284 0.9334 31 1 1.6015 1.9829 -0.8389 32 1 3.6058 0.0358 1.3680 33 1 3.5297 2.5300 2.0990 34 1 5.1306 0.3537 3.5195 35 1 4.4546 1.8114 4.2847 36 1 3.3667 0.5729 3.6128 37 1 6.4883 1.7874 1.9886 38 1 5.6916 3.0280 0.9912 39 1 5.8117 3.2455 2.7536 40 1 2.9566 -0.1599 -4.2618 41 1 4.7294 0.2302 -4.1687 42 1 4.4051 3.7320 -4.7779 43 1 2.2988 5.2855 -5.8635 44 1 2.8701 3.1228 -2.5734 45 1 1.6192 1.9197 -3.1158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356577995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:53 Heat of formation + Delta-G solvation = -83.385239 kcal Electronic energy + Delta-G solvation = -24057.008138 eV Core-core repulsion = 20688.413595 eV Total energy + Delta-G solvation = -3368.594543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40070 -39.60113 -38.02836 -35.92129 -35.57288 -34.14058 -32.47430 -30.47964 -28.65403 -28.04537 -27.12122 -26.95579 -24.82236 -22.91453 -21.68769 -20.93061 -19.85812 -19.10088 -17.78977 -17.47138 -17.00831 -16.92334 -16.31456 -16.02205 -15.63216 -15.56041 -15.23856 -14.73944 -14.48641 -14.26331 -14.01262 -13.71843 -13.55148 -13.43880 -13.40213 -13.09480 -12.89644 -12.84834 -12.75104 -12.54912 -12.37908 -12.24017 -12.21365 -12.15117 -11.96106 -11.71966 -11.57274 -11.30573 -10.82054 -10.59857 -10.19274 -9.49331 -9.34862 -8.25043 -6.42158 1.48118 1.50640 1.57435 1.75332 1.93732 2.41597 2.97121 3.12150 3.49926 3.74886 3.78958 3.85547 4.04119 4.07371 4.19538 4.19849 4.36941 4.41762 4.49690 4.55961 4.61642 4.67745 4.77875 4.81535 4.81694 4.83803 4.90087 4.93960 4.95793 4.98650 5.06176 5.16915 5.22168 5.26737 5.31283 5.35728 5.38437 5.73403 5.94932 6.02741 6.43992 6.62879 6.93549 7.28400 7.33575 7.45612 8.80611 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.004567 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.396638 B = 6129.819707 C = 6555.333870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.138 4.138 4 C 0.087 3.913 5 H 0.094 0.906 6 N -0.677 5.677 7 C 0.077 3.923 8 C -0.147 4.147 9 C -0.141 4.141 10 C 0.532 3.468 11 O -0.583 6.583 12 N -0.635 5.635 13 C 0.111 3.889 14 C 0.219 3.781 15 O -0.587 6.587 16 C -0.558 4.558 17 H 0.070 0.930 18 C 0.037 3.963 19 N -0.915 5.915 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.277 1.277 24 C 0.102 3.898 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.349 0.651 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.387 0.613 43 H 0.276 0.724 44 H 0.064 0.936 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 -1.534 14.392 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.177 4.177 4 C -0.027 4.027 5 H 0.112 0.888 6 N -0.311 5.311 7 C -0.032 4.032 8 C -0.204 4.204 9 C -0.199 4.199 10 C 0.322 3.678 11 O -0.464 6.464 12 N -0.369 5.369 13 C -0.012 4.012 14 C 0.178 3.822 15 O -0.399 6.399 16 C -0.596 4.596 17 H 0.088 0.912 18 C -0.164 4.164 19 N -0.555 5.555 20 Si 0.790 3.210 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.202 1.202 24 C -0.021 4.021 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.241 0.759 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.506 -2.395 14.611 15.215 hybrid contribution -1.304 0.759 -1.052 1.839 sum -4.810 -1.636 13.559 14.480 Atomic orbital electron populations 1.21696 0.93818 1.02225 1.02342 1.21486 0.97540 0.95735 1.01173 1.22214 0.92907 0.98448 1.04107 1.21315 0.94888 0.97512 0.88952 0.88765 1.60136 1.55179 1.10791 1.05006 1.21647 0.97513 0.93473 0.90564 1.21917 1.02425 1.01040 0.95025 1.21836 0.97084 0.99922 1.01031 1.20802 0.79176 0.84232 0.83566 1.90590 1.39934 1.29603 1.86251 1.50253 1.50142 1.31456 1.05097 1.23376 1.00567 0.98036 0.79210 1.20134 0.83387 0.86814 0.91885 1.86059 1.33909 1.27871 1.92049 1.21696 1.30017 0.93688 1.14195 0.91187 1.25693 0.96617 0.94961 0.99166 1.69455 1.45896 0.98428 1.41764 0.85494 0.79146 0.77134 0.79177 1.19170 1.20731 1.20209 1.24029 0.95267 0.88135 0.94678 0.92138 0.91087 0.93158 0.94744 0.91209 0.88701 0.91062 0.82995 0.92718 0.92472 0.90065 0.91809 0.93172 0.94802 0.90322 0.88371 0.92854 0.75906 0.91467 0.91708 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.91 71.98 0.71 -2.20 16 2 C -0.12 -3.01 5.42 30.60 0.17 -2.85 16 3 C -0.14 -3.45 4.89 30.60 0.15 -3.30 16 4 C 0.09 2.71 2.39 44.17 0.11 2.82 16 5 H 0.09 3.02 7.20 -2.39 -0.02 3.00 16 6 N -0.68 -19.00 5.55 -473.31 -2.63 -21.63 16 7 C 0.08 1.65 3.01 44.92 0.14 1.78 16 8 C -0.15 -2.37 9.17 71.98 0.66 -1.71 16 9 C -0.14 -3.23 9.41 71.98 0.68 -2.56 16 10 C 0.53 21.85 5.87 87.66 0.51 22.37 16 11 O -0.58 -28.01 17.16 -3.03 -0.05 -28.06 16 12 N -0.64 -26.83 3.57 -839.35 -3.00 -29.83 16 13 C 0.11 4.96 8.22 86.49 0.71 5.67 16 14 C 0.22 10.50 1.40 -10.88 -0.02 10.49 16 15 O -0.59 -30.78 13.49 -148.98 -2.01 -32.79 16 16 C -0.56 -27.68 8.61 25.60 0.22 -27.46 16 17 H 0.07 3.39 7.81 -2.91 -0.02 3.36 16 18 C 0.04 1.77 5.39 84.65 0.46 2.23 16 19 N -0.92 -45.43 11.20 21.45 0.24 -45.19 16 20 Si 0.97 38.87 29.54 68.60 2.03 40.90 16 21 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 24 C 0.10 4.24 6.33 86.43 0.55 4.79 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.03 1.08 6.88 -2.39 -0.02 1.07 16 29 H 0.07 1.56 6.63 -2.39 -0.02 1.54 16 30 H 0.09 1.88 7.48 -2.39 -0.02 1.86 16 31 H 0.07 1.94 6.34 -2.39 -0.02 1.93 16 32 H 0.35 9.09 6.22 -89.69 -0.56 8.54 16 33 H 0.05 1.07 7.18 -2.39 -0.02 1.05 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 37 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.03 0.90 7.53 -2.38 -0.02 0.88 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 4.01 8.09 -2.38 -0.02 3.99 16 41 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.39 20.35 6.60 -74.06 -0.49 19.86 16 43 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 44 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.09 3.55 7.99 -2.39 -0.02 3.53 16 Total: -1.00 -59.89 357.52 -0.45 -60.34 By element: Atomic # 1 Polarization: 46.28 SS G_CDS: -0.07 Total: 46.21 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.04 Total: 10.06 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -5.39 Total: -96.65 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -2.06 Total: -60.85 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -59.89 -0.45 -60.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356577995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.046 kcal (2) G-P(sol) polarization free energy of solvation -59.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds