Wall clock time and date at job start Tue Mar 31 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00495 * 2 1 4 4 H 1.09004 * 112.84510 * 21.69724 * 3 2 1 5 5 C 1.53774 * 113.61537 * 250.50329 * 3 2 1 6 6 C 1.53783 * 87.07878 * 220.01660 * 5 3 2 7 7 H 1.09001 * 113.61230 * 270.79906 * 6 5 3 8 8 N 1.46499 * 113.61689 * 139.97987 * 6 5 3 9 9 C 1.34780 * 119.99915 * 104.50556 * 8 6 5 10 10 O 1.21277 * 120.00214 * 359.97438 * 9 8 6 11 11 C 1.50707 * 119.99831 * 180.02562 * 9 8 6 12 12 H 1.08993 * 109.47076 * 319.99803 * 11 9 8 13 13 N 1.46897 * 109.46927 * 199.99926 * 11 9 8 14 14 C 1.52997 * 109.47050 * 80.00030 * 11 9 8 15 15 C 1.53004 * 109.47000 * 185.00267 * 14 11 9 16 16 C 1.50701 * 109.47211 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47266 * 60.00049 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47383 * 299.99456 * 20 18 16 24 24 C 1.53773 * 87.08183 * 25.43212 * 6 5 3 25 25 C 1.53002 * 113.61925 * 89.11707 * 24 6 5 26 26 C 1.53006 * 113.61891 * 220.02220 * 24 6 5 27 27 H 1.09003 * 109.46570 * 299.99369 * 1 2 3 28 28 H 1.08998 * 109.47406 * 59.99403 * 1 2 3 29 29 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 30 30 H 1.09000 * 113.61944 * 105.47336 * 5 3 2 31 31 H 1.08997 * 113.69414 * 334.56994 * 5 3 2 32 32 H 0.97003 * 120.00069 * 284.50766 * 8 6 5 33 33 H 1.00896 * 111.00360 * 176.04585 * 13 11 9 34 34 H 1.00910 * 110.99984 * 299.99857 * 13 11 9 35 35 H 1.09000 * 109.47849 * 64.99787 * 14 11 9 36 36 H 1.09007 * 109.47288 * 304.99380 * 14 11 9 37 37 H 1.09000 * 109.47211 * 59.99130 * 15 14 11 38 38 H 1.09007 * 109.46376 * 299.99672 * 15 14 11 39 39 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.46775 * 59.99305 * 25 24 6 41 41 H 1.09000 * 109.47430 * 180.02562 * 25 24 6 42 42 H 1.09009 * 109.46810 * 300.00476 * 25 24 6 43 43 H 1.08994 * 109.46744 * 59.99522 * 26 24 6 44 44 H 1.08990 * 109.47634 * 179.97438 * 26 24 6 45 45 H 1.09005 * 109.46325 * 300.00183 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3299 2.0717 0.3714 5 6 2.6905 1.6768 -1.3282 6 6 3.8011 2.3277 -0.4867 7 1 3.6120 3.3745 -0.2489 8 7 5.1482 2.0986 -1.0148 9 6 5.7981 3.0899 -1.6563 10 8 5.2675 4.1714 -1.7968 11 6 7.1837 2.8541 -2.2001 12 1 7.7565 2.2587 -1.4893 13 7 7.8536 4.1445 -2.4098 14 6 7.0886 2.1066 -3.5317 15 6 8.4952 1.7573 -4.0221 16 6 8.4016 1.0216 -5.3339 17 1 7.4354 0.8225 -5.7736 18 6 9.5490 0.5971 -5.9696 19 7 10.7255 0.8392 -5.4340 20 14 9.4326 -0.3218 -7.5918 21 1 8.7607 0.5369 -8.6000 22 1 10.7977 -0.6649 -8.0654 23 1 8.6472 -1.5674 -7.3999 24 6 3.4078 1.3574 0.6396 25 6 4.1554 0.0234 0.5884 26 6 3.4219 1.9949 2.0305 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 2.1217 2.3889 -1.9260 31 1 3.0275 0.8148 -1.9038 32 1 5.5725 1.2335 -0.9029 33 1 8.8067 4.0121 -2.7131 34 1 7.3415 4.7155 -3.0656 35 1 6.5933 2.7386 -4.2687 36 1 6.5141 1.1905 -3.3938 37 1 8.9905 1.1253 -3.2850 38 1 9.0697 2.6734 -4.1599 39 1 11.5327 0.5402 -5.8810 40 1 5.2269 0.2040 0.6738 41 1 3.8262 -0.6094 1.4126 42 1 3.9452 -0.4746 -0.3582 43 1 2.7172 2.8260 2.0563 44 1 3.1338 1.2516 2.7738 45 1 4.4243 2.3613 2.2520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424123337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:10 Heat of formation + Delta-G solvation = -80.904376 kcal Electronic energy + Delta-G solvation = -23122.374895 eV Core-core repulsion = 19753.887929 eV Total energy + Delta-G solvation = -3368.486965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82123 -39.03749 -36.76440 -35.39275 -33.23388 -32.82520 -30.75378 -29.87131 -27.79320 -27.27202 -26.52666 -24.58441 -23.07939 -22.66995 -20.67466 -19.79915 -18.90542 -17.28609 -17.17518 -16.20643 -15.79660 -15.65745 -15.23956 -14.79274 -14.65528 -14.40070 -14.10899 -13.98045 -13.57436 -13.43176 -13.07389 -12.90992 -12.40961 -12.37247 -12.20593 -12.09126 -12.00492 -11.67855 -11.63542 -11.08119 -11.02399 -10.91522 -10.84854 -10.70356 -10.69544 -9.97392 -9.88209 -9.60154 -9.27887 -9.18705 -8.86335 -8.43010 -8.16852 -6.07713 -4.10903 2.94315 3.18734 3.29186 3.33920 3.36471 3.69968 4.12596 4.27561 4.40222 4.55084 4.65864 4.95406 4.96826 5.06701 5.12364 5.14438 5.21688 5.28436 5.35300 5.37746 5.45865 5.48773 5.60417 5.66104 5.76789 5.78159 5.79305 5.80949 5.92222 6.10638 6.21240 6.30397 6.53139 6.62308 6.88809 6.97999 7.45995 7.52779 7.62817 7.74883 7.89227 7.92518 8.32018 8.50669 8.94862 9.53948 11.03173 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.003546 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.107337 B = 7894.676868 C = 8733.926712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.071 3.929 4 H 0.089 0.911 5 C -0.170 4.170 6 C 0.135 3.865 7 H 0.114 0.886 8 N -0.721 5.721 9 C 0.527 3.473 10 O -0.540 6.540 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.831 5.831 14 C -0.137 4.137 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.087 4.087 25 C -0.125 4.125 26 C -0.137 4.137 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.403 0.597 33 H 0.354 0.646 34 H 0.345 0.655 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.262 0.738 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.166 -0.490 14.246 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.013 3.987 4 H 0.106 0.894 5 C -0.209 4.209 6 C 0.029 3.971 7 H 0.132 0.868 8 N -0.374 5.374 9 C 0.314 3.686 10 O -0.416 6.416 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.363 5.363 14 C -0.177 4.177 15 C -0.012 4.012 16 C -0.563 4.563 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.088 4.088 25 C -0.183 4.183 26 C -0.195 4.195 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.239 0.761 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.345 0.241 14.895 22.864 hybrid contribution 0.015 -1.101 -1.932 2.223 sum -17.329 -0.859 12.963 21.658 Atomic orbital electron populations 1.22778 0.81432 1.02653 0.99842 1.87947 1.19290 1.26975 1.94556 1.23662 0.93251 0.85280 0.96521 0.89359 1.23993 0.97884 1.01580 0.97476 1.22169 0.81953 0.99520 0.93425 0.86833 1.45943 1.16831 1.15935 1.58657 1.20926 0.87798 0.83465 0.76410 1.90617 1.68734 1.24926 1.57293 1.21479 0.91333 0.92614 0.98706 0.88636 1.58747 1.07074 1.14222 1.56223 1.22376 1.02405 0.99032 0.93865 1.19098 0.89307 0.96693 0.96143 1.21149 0.92564 1.36538 1.06015 0.92775 1.25007 0.95423 0.96075 0.97776 1.69937 0.97433 1.46600 1.39260 0.86645 0.77098 0.80300 0.83900 1.20230 1.21213 1.20205 1.22526 0.94624 0.96620 0.95004 1.21420 0.99089 0.94512 1.03244 1.21761 1.02359 1.00257 0.95084 0.94172 0.94068 0.89762 0.90854 0.88579 0.76079 0.83087 0.84164 0.92704 0.92555 0.96328 0.96415 0.92824 0.92204 0.91684 0.91473 0.92501 0.92173 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.86 101.05 1.10 1.31 16 2 O -0.37 -3.74 9.80 -35.23 -0.35 -4.08 16 3 C 0.07 0.67 3.70 -25.92 -0.10 0.58 16 4 H 0.09 0.71 7.72 -51.93 -0.40 0.31 16 5 C -0.17 -1.88 7.36 -25.92 -0.19 -2.07 16 6 C 0.14 1.58 3.65 -67.12 -0.25 1.33 16 7 H 0.11 1.45 7.49 -51.93 -0.39 1.06 16 8 N -0.72 -9.49 5.26 -53.02 -0.28 -9.77 16 9 C 0.53 8.78 7.08 -10.98 -0.08 8.70 16 10 O -0.54 -10.55 15.89 5.56 0.09 -10.46 16 11 C 0.07 1.27 3.21 -68.86 -0.22 1.05 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.83 -14.50 8.94 -5.66 -0.05 -14.55 16 14 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 15 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 C -0.09 -0.83 1.35 -153.70 -0.21 -1.03 16 25 C -0.13 -1.18 7.46 37.16 0.28 -0.91 16 26 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.15 7.66 -51.93 -0.40 0.75 16 32 H 0.40 4.70 6.58 -40.82 -0.27 4.43 16 33 H 0.35 6.18 7.55 -39.29 -0.30 5.88 16 34 H 0.35 6.11 8.58 -39.29 -0.34 5.78 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.06 0.53 7.04 -51.93 -0.37 0.17 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.69 7.19 -51.92 -0.37 0.32 16 43 H 0.06 0.43 7.95 -51.93 -0.41 0.02 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -31.47 362.22 -7.19 -38.67 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -7.79 Total: 11.20 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 0.01 Total: -7.43 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.41 Total: -49.69 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.26 Total: -14.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.47 -7.19 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.236 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds