Wall clock time and date at job start Tue Mar 31 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00495 * 2 1 4 4 H 1.09004 * 112.84510 * 21.69724 * 3 2 1 5 5 C 1.53774 * 113.61537 * 250.50329 * 3 2 1 6 6 C 1.53783 * 87.07878 * 220.01660 * 5 3 2 7 7 H 1.09001 * 113.61230 * 270.79906 * 6 5 3 8 8 N 1.46499 * 113.61689 * 139.97987 * 6 5 3 9 9 C 1.34780 * 119.99915 * 104.50556 * 8 6 5 10 10 O 1.21277 * 120.00214 * 359.97438 * 9 8 6 11 11 C 1.50707 * 119.99831 * 180.02562 * 9 8 6 12 12 H 1.08993 * 109.47076 * 319.99803 * 11 9 8 13 13 N 1.46897 * 109.46927 * 199.99926 * 11 9 8 14 14 C 1.52997 * 109.47050 * 80.00030 * 11 9 8 15 15 C 1.53004 * 109.47000 * 185.00267 * 14 11 9 16 16 C 1.50701 * 109.47211 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47266 * 60.00049 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47383 * 299.99456 * 20 18 16 24 24 C 1.53773 * 87.08183 * 25.43212 * 6 5 3 25 25 C 1.53002 * 113.61925 * 89.11707 * 24 6 5 26 26 C 1.53006 * 113.61891 * 220.02220 * 24 6 5 27 27 H 1.09003 * 109.46570 * 299.99369 * 1 2 3 28 28 H 1.08998 * 109.47406 * 59.99403 * 1 2 3 29 29 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 30 30 H 1.09000 * 113.61944 * 105.47336 * 5 3 2 31 31 H 1.08997 * 113.69414 * 334.56994 * 5 3 2 32 32 H 0.97003 * 120.00069 * 284.50766 * 8 6 5 33 33 H 1.00896 * 111.00360 * 176.04585 * 13 11 9 34 34 H 1.00910 * 110.99984 * 299.99857 * 13 11 9 35 35 H 1.09000 * 109.47849 * 64.99787 * 14 11 9 36 36 H 1.09007 * 109.47288 * 304.99380 * 14 11 9 37 37 H 1.09000 * 109.47211 * 59.99130 * 15 14 11 38 38 H 1.09007 * 109.46376 * 299.99672 * 15 14 11 39 39 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.46775 * 59.99305 * 25 24 6 41 41 H 1.09000 * 109.47430 * 180.02562 * 25 24 6 42 42 H 1.09009 * 109.46810 * 300.00476 * 25 24 6 43 43 H 1.08994 * 109.46744 * 59.99522 * 26 24 6 44 44 H 1.08990 * 109.47634 * 179.97438 * 26 24 6 45 45 H 1.09005 * 109.46325 * 300.00183 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3299 2.0717 0.3714 5 6 2.6905 1.6768 -1.3282 6 6 3.8011 2.3277 -0.4867 7 1 3.6120 3.3745 -0.2489 8 7 5.1482 2.0986 -1.0148 9 6 5.7981 3.0899 -1.6563 10 8 5.2675 4.1714 -1.7968 11 6 7.1837 2.8541 -2.2001 12 1 7.7565 2.2587 -1.4893 13 7 7.8536 4.1445 -2.4098 14 6 7.0886 2.1066 -3.5317 15 6 8.4952 1.7573 -4.0221 16 6 8.4016 1.0216 -5.3339 17 1 7.4354 0.8225 -5.7736 18 6 9.5490 0.5971 -5.9696 19 7 10.7255 0.8392 -5.4340 20 14 9.4326 -0.3218 -7.5918 21 1 8.7607 0.5369 -8.6000 22 1 10.7977 -0.6649 -8.0654 23 1 8.6472 -1.5674 -7.3999 24 6 3.4078 1.3574 0.6396 25 6 4.1554 0.0234 0.5884 26 6 3.4219 1.9949 2.0305 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 2.1217 2.3889 -1.9260 31 1 3.0275 0.8148 -1.9038 32 1 5.5725 1.2335 -0.9029 33 1 8.8067 4.0121 -2.7131 34 1 7.3415 4.7155 -3.0656 35 1 6.5933 2.7386 -4.2687 36 1 6.5141 1.1905 -3.3938 37 1 8.9905 1.1253 -3.2850 38 1 9.0697 2.6734 -4.1599 39 1 11.5327 0.5402 -5.8810 40 1 5.2269 0.2040 0.6738 41 1 3.8262 -0.6094 1.4126 42 1 3.9452 -0.4746 -0.3582 43 1 2.7172 2.8260 2.0563 44 1 3.1338 1.2516 2.7738 45 1 4.4243 2.3613 2.2520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424123337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:10 Heat of formation + Delta-G solvation = -103.416887 kcal Electronic energy + Delta-G solvation = -23123.351110 eV Core-core repulsion = 19753.887929 eV Total energy + Delta-G solvation = -3369.463181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77137 -40.25212 -37.58791 -36.96956 -34.83812 -34.35378 -31.68515 -31.54421 -28.50685 -28.47913 -27.56606 -26.11542 -24.32746 -23.50879 -22.33158 -21.14550 -19.82874 -18.80926 -18.14134 -17.94764 -16.70214 -16.58159 -16.41861 -16.21338 -15.92355 -15.80991 -15.39409 -15.00035 -14.76123 -14.57729 -14.28990 -14.14650 -13.89933 -13.48493 -13.20450 -13.11520 -12.93767 -12.91116 -12.77271 -12.64167 -12.53746 -12.31373 -11.84343 -11.79710 -11.72083 -11.60552 -11.52212 -11.31927 -10.71018 -10.55738 -10.33102 -9.97746 -9.64369 -8.21434 -6.31950 1.39793 1.41315 1.49302 1.60311 2.10067 2.40001 2.93990 3.12084 3.30815 3.47033 3.74165 3.77426 3.81389 3.85038 4.12724 4.23751 4.25570 4.30260 4.47010 4.54103 4.59888 4.65417 4.66269 4.79742 4.82680 4.89468 4.89878 4.96005 5.00792 5.05710 5.08615 5.12123 5.37959 5.42381 5.46114 5.55166 5.65553 5.80439 6.07262 6.21233 6.30986 6.47686 6.54159 6.83243 7.23587 7.37124 8.89147 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.003546 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.107337 B = 7894.676868 C = 8733.926712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.387 6.387 3 C 0.080 3.920 4 H 0.106 0.894 5 C -0.172 4.172 6 C 0.127 3.873 7 H 0.105 0.895 8 N -0.706 5.706 9 C 0.529 3.471 10 O -0.571 6.571 11 C 0.079 3.921 12 H 0.109 0.891 13 N -0.829 5.829 14 C -0.120 4.120 15 C 0.031 3.969 16 C -0.547 4.547 17 H 0.054 0.946 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.958 3.042 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.267 1.267 24 C -0.078 4.078 25 C -0.125 4.125 26 C -0.135 4.135 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.411 0.589 33 H 0.352 0.648 34 H 0.344 0.656 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.530 -1.323 14.836 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.306 6.306 3 C 0.021 3.979 4 H 0.124 0.876 5 C -0.211 4.211 6 C 0.021 3.979 7 H 0.123 0.877 8 N -0.358 5.358 9 C 0.316 3.684 10 O -0.449 6.449 11 C -0.036 4.036 12 H 0.127 0.873 13 N -0.361 5.361 14 C -0.160 4.160 15 C -0.006 4.006 16 C -0.585 4.585 17 H 0.072 0.928 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.783 3.217 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.192 1.192 24 C -0.079 4.079 25 C -0.183 4.183 26 C -0.192 4.192 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.249 0.751 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.734 -0.624 15.507 24.327 hybrid contribution 0.410 -0.860 -2.093 2.300 sum -18.324 -1.484 13.414 22.758 Atomic orbital electron populations 1.22960 0.79996 1.03668 1.00681 1.87921 1.20938 1.27142 1.94553 1.23621 0.93500 0.85711 0.95038 0.87610 1.23972 0.97915 1.01016 0.98242 1.22330 0.80973 0.99718 0.94851 0.87738 1.45859 1.17291 1.15431 1.57259 1.20723 0.87427 0.83623 0.76665 1.90606 1.69236 1.26262 1.58839 1.21422 0.92290 0.92291 0.97580 0.87348 1.58763 1.06993 1.14257 1.56045 1.22124 0.99431 0.99489 0.94951 1.18962 0.91564 0.95298 0.94818 1.21597 0.92687 1.36850 1.07349 0.92771 1.25858 0.95087 0.96955 1.01354 1.70049 0.98087 1.47641 1.40835 0.85602 0.77303 0.79209 0.79555 1.19641 1.20754 1.19230 1.22473 0.94537 0.95940 0.94990 1.21421 0.99358 0.94484 1.02994 1.21755 1.02415 1.00768 0.94311 0.92728 0.93815 0.88770 0.91147 0.89649 0.75092 0.83262 0.84345 0.93779 0.91742 0.97930 0.97905 0.92698 0.91828 0.90938 0.92493 0.91622 0.91106 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.86 113.37 1.23 1.52 16 2 O -0.39 -7.11 9.80 -148.98 -1.46 -8.57 16 3 C 0.08 1.36 3.70 31.12 0.12 1.48 16 4 H 0.11 1.44 7.72 -2.38 -0.02 1.42 16 5 C -0.17 -3.66 7.36 31.12 0.23 -3.43 16 6 C 0.13 2.82 3.65 45.52 0.17 2.99 16 7 H 0.10 2.58 7.49 -2.39 -0.02 2.56 16 8 N -0.71 -17.97 5.26 -440.04 -2.31 -20.28 16 9 C 0.53 17.32 7.08 87.66 0.62 17.94 16 10 O -0.57 -22.18 15.89 -3.02 -0.05 -22.23 16 11 C 0.08 2.70 3.21 44.17 0.14 2.84 16 12 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 13 N -0.83 -28.95 8.94 -171.81 -1.54 -30.49 16 14 C -0.12 -4.74 4.78 30.59 0.15 -4.59 16 15 C 0.03 1.52 4.74 29.85 0.14 1.66 16 16 C -0.55 -30.23 9.11 25.60 0.23 -30.00 16 17 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 18 C 0.01 0.34 5.46 84.65 0.46 0.80 16 19 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 20 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 C -0.08 -1.36 1.35 -51.66 -0.07 -1.43 16 25 C -0.13 -2.17 7.46 71.98 0.54 -1.63 16 26 C -0.14 -1.96 9.20 71.98 0.66 -1.30 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.00 7.66 -2.39 -0.02 1.98 16 32 H 0.41 9.12 6.58 -92.71 -0.61 8.51 16 33 H 0.35 12.43 7.55 -89.70 -0.68 11.76 16 34 H 0.34 12.25 8.58 -89.69 -0.77 11.48 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.00 0.14 6.87 -2.38 -0.02 0.12 16 39 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 40 H 0.06 1.03 7.04 -2.39 -0.02 1.02 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.10 7.19 -2.38 -0.02 1.09 16 43 H 0.06 0.84 7.95 -2.39 -0.02 0.82 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -66.34 362.22 0.50 -65.83 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -1.07 Total: 37.54 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.62 Total: -13.15 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -3.56 Total: -104.98 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.51 Total: -30.80 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -66.34 0.50 -65.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.585 kcal (2) G-P(sol) polarization free energy of solvation -66.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds