Wall clock time and date at job start Tue Mar 31 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.08999 * 109.50919 * 300.09649 * 4 2 1 6 6 C 1.53291 * 109.51288 * 180.02562 * 4 2 1 7 7 N 1.47148 * 108.38763 * 187.77432 * 6 4 2 8 8 C 1.34778 * 120.98493 * 230.51646 * 7 6 4 9 9 O 1.21281 * 119.99824 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.00458 * 179.97438 * 8 7 6 11 11 H 1.09005 * 109.46719 * 319.99475 * 10 8 7 12 12 N 1.46896 * 109.47239 * 199.99881 * 10 8 7 13 13 C 1.53001 * 109.47217 * 79.99110 * 10 8 7 14 14 C 1.53008 * 109.47044 * 185.00099 * 13 10 8 15 15 C 1.50693 * 109.47090 * 180.02562 * 14 13 10 16 16 H 1.08006 * 120.00296 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00311 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99855 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00265 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47019 * 90.00277 * 19 17 15 21 21 H 1.48500 * 109.46887 * 210.00196 * 19 17 15 22 22 H 1.48501 * 109.46971 * 330.00109 * 19 17 15 23 23 C 1.47148 * 118.03567 * 50.52872 * 7 6 4 24 24 C 1.53294 * 108.38911 * 309.47062 * 23 7 6 25 25 O 1.42954 * 109.51212 * 60.25210 * 4 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09005 * 109.68059 * 307.49535 * 6 4 2 34 34 H 1.09005 * 109.68663 * 68.00977 * 6 4 2 35 35 H 1.00901 * 110.99961 * 176.04311 * 12 10 8 36 36 H 1.00895 * 111.00027 * 299.99416 * 12 10 8 37 37 H 1.08990 * 109.47289 * 305.00640 * 13 10 8 38 38 H 1.08998 * 109.46564 * 65.00655 * 13 10 8 39 39 H 1.09002 * 109.47124 * 300.00403 * 14 13 10 40 40 H 1.09000 * 109.46868 * 60.00283 * 14 13 10 41 41 H 0.97000 * 120.00344 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.68136 * 69.19502 * 23 7 6 43 43 H 1.09004 * 109.68476 * 189.74828 * 23 7 6 44 44 H 1.08995 * 109.51550 * 172.22214 * 24 23 7 45 45 H 1.09003 * 109.50928 * 292.37812 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6756 -0.2091 2.1397 6 6 3.5729 -0.7214 1.2505 7 7 4.0362 -1.5769 2.3545 8 6 4.9515 -1.1336 3.2389 9 8 5.4063 -0.0144 3.1312 10 6 5.4098 -2.0283 4.3614 11 1 4.5570 -2.5793 4.7582 12 7 6.0037 -1.2110 5.4278 13 6 6.4535 -3.0148 3.8337 14 6 6.8270 -4.0029 4.9407 15 6 7.8554 -4.9741 4.4210 16 1 8.2077 -4.8945 3.4032 17 6 8.3473 -5.9638 5.2453 18 7 7.9188 -6.0606 6.4848 19 14 9.6216 -7.1683 4.6009 20 1 10.9826 -6.6292 4.8499 21 1 9.4695 -8.4702 5.2988 22 1 9.4255 -7.3628 3.1418 23 6 3.4707 -2.9310 2.4642 24 6 1.9428 -2.8234 2.4038 25 8 1.5688 -2.0710 1.2471 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.9408 -1.1140 0.3025 34 1 3.9400 0.2949 1.3941 35 1 6.2604 -1.7809 6.2198 36 1 6.7969 -0.6901 5.0849 37 1 6.0417 -3.5595 2.9842 38 1 7.3428 -2.4689 3.5187 39 1 7.2389 -3.4580 5.7902 40 1 5.9377 -4.5487 5.2557 41 1 8.2646 -6.7571 7.0646 42 1 3.8284 -3.5462 1.6384 43 1 3.7700 -3.3782 3.4122 44 1 1.5095 -3.8218 2.3444 45 1 1.5777 -2.3198 3.2989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424185002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:10 Heat of formation + Delta-G solvation = -99.667918 kcal Electronic energy + Delta-G solvation = -23513.878021 eV Core-core repulsion = 20144.577408 eV Total energy + Delta-G solvation = -3369.300613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.50466 -38.70183 -35.81561 -35.51330 -34.65574 -32.88824 -30.60971 -29.92983 -28.39090 -27.19247 -26.26695 -24.51646 -23.64058 -22.14175 -20.53071 -20.30886 -18.91491 -17.62986 -16.81509 -16.36104 -15.99354 -15.76832 -15.04805 -14.91594 -14.62482 -14.37510 -14.29710 -14.05454 -13.53083 -13.51566 -13.21001 -12.88585 -12.71445 -12.39226 -12.33037 -12.10502 -11.81715 -11.56439 -11.41150 -11.22097 -11.11255 -10.98577 -10.93441 -10.70774 -10.58207 -10.21623 -10.01989 -9.89971 -9.30619 -9.22109 -8.53874 -8.46782 -8.22705 -6.11373 -4.14626 2.84411 2.90539 3.25472 3.32301 3.35303 3.48494 4.36746 4.41001 4.61284 4.66169 4.74161 4.86185 4.95064 5.03933 5.09811 5.14657 5.22805 5.24923 5.37730 5.40511 5.47102 5.49533 5.60522 5.64222 5.64812 5.69187 5.74013 5.82570 5.85483 6.05227 6.09490 6.23856 6.40103 6.50044 6.82471 6.98501 7.31295 7.47361 7.53943 7.59554 7.85239 7.86968 8.27771 8.35586 8.91199 9.50565 10.99484 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.003516 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.102433 B = 7961.796947 C = 8378.498714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.151 4.151 4 C 0.083 3.917 5 H 0.062 0.938 6 C 0.083 3.917 7 N -0.619 5.619 8 C 0.529 3.471 9 O -0.537 6.537 10 C 0.075 3.925 11 H 0.097 0.903 12 N -0.831 5.831 13 C -0.138 4.138 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.069 3.931 24 C 0.049 3.951 25 O -0.375 6.375 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.355 0.645 36 H 0.346 0.654 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.262 0.738 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.531 9.562 -10.494 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.208 4.208 4 C 0.025 3.975 5 H 0.080 0.920 6 C -0.040 4.040 7 N -0.355 5.355 8 C 0.318 3.682 9 O -0.413 6.413 10 C -0.040 4.040 11 H 0.114 0.886 12 N -0.363 5.363 13 C -0.178 4.178 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.054 4.054 24 C -0.029 4.029 25 O -0.294 6.294 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.170 0.830 36 H 0.159 0.841 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.064 10.367 -10.486 21.080 hybrid contribution 1.773 -1.421 -0.209 2.282 sum -13.291 8.947 -10.695 19.263 Atomic orbital electron populations 1.21752 0.94332 1.02452 1.01421 1.21068 0.96757 0.95698 0.96958 1.21889 1.01608 0.94992 1.02308 1.22533 0.92626 0.83541 0.98812 0.91981 1.22301 0.94300 0.97349 0.90042 1.48119 1.42868 1.15268 1.29213 1.20933 0.77501 0.87441 0.82279 1.90619 1.55896 1.20633 1.74152 1.21503 0.99239 0.92441 0.90852 0.88572 1.58755 1.38412 1.30171 1.08950 1.22406 0.96792 0.97304 1.01320 1.19096 0.96704 0.92807 0.92558 1.21168 1.23357 1.13506 0.98210 0.92725 1.25006 0.96721 0.97666 0.94872 1.69944 1.43411 1.33771 1.06048 0.86582 0.81822 0.80529 0.79026 1.20618 1.21126 1.19859 1.22557 0.94222 0.83910 1.04759 1.22999 0.93882 0.97254 0.88739 1.87923 1.75854 1.23278 1.42350 0.92704 0.92902 0.91763 0.90207 0.92345 0.92014 0.91933 0.91049 0.88115 0.83001 0.84106 0.92448 0.92643 0.96394 0.96354 0.92852 0.90176 0.87791 0.87381 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.05 37.16 0.34 -0.81 16 2 C -0.09 -0.75 2.72 -90.62 -0.25 -1.00 16 3 C -0.15 -1.19 8.85 37.15 0.33 -0.86 16 4 C 0.08 0.90 2.36 -26.58 -0.06 0.84 16 5 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 6 C 0.08 1.04 5.32 -3.54 -0.02 1.02 16 7 N -0.62 -8.80 3.02 -172.28 -0.52 -9.32 16 8 C 0.53 9.10 6.96 -10.99 -0.08 9.02 16 9 O -0.54 -10.68 15.72 5.56 0.09 -10.59 16 10 C 0.07 1.28 2.36 -68.87 -0.16 1.12 16 11 H 0.10 1.55 6.51 -51.93 -0.34 1.21 16 12 N -0.83 -14.41 8.94 -5.66 -0.05 -14.46 16 13 C -0.14 -2.71 4.59 -26.73 -0.12 -2.83 16 14 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 15 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.07 0.83 5.76 -3.54 -0.02 0.81 16 24 C 0.05 0.50 6.98 37.31 0.26 0.76 16 25 O -0.38 -4.28 9.72 -35.23 -0.34 -4.62 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.57 7.69 -51.93 -0.40 0.17 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.51 6.62 -51.93 -0.34 0.17 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.34 5.85 -51.93 -0.30 1.04 16 35 H 0.35 6.11 7.55 -39.29 -0.30 5.81 16 36 H 0.35 6.09 8.58 -39.29 -0.34 5.76 16 37 H 0.06 1.09 7.26 -51.93 -0.38 0.71 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.10 1.27 5.38 -51.93 -0.28 0.99 16 44 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -31.04 351.87 -7.78 -38.82 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.65 Total: 8.26 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.33 Total: -4.48 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.17 Total: -48.79 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.26 Total: -15.21 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.04 -7.78 -38.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424185002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.849 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds