Wall clock time and date at job start Tue Mar 31 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.08999 * 109.50919 * 300.09649 * 4 2 1 6 6 C 1.53291 * 109.51288 * 180.02562 * 4 2 1 7 7 N 1.47148 * 108.38763 * 187.77432 * 6 4 2 8 8 C 1.34778 * 120.98493 * 230.51646 * 7 6 4 9 9 O 1.21281 * 119.99824 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.00458 * 179.97438 * 8 7 6 11 11 H 1.09005 * 109.46719 * 319.99475 * 10 8 7 12 12 N 1.46896 * 109.47239 * 199.99881 * 10 8 7 13 13 C 1.53001 * 109.47217 * 79.99110 * 10 8 7 14 14 C 1.53008 * 109.47044 * 185.00099 * 13 10 8 15 15 C 1.50693 * 109.47090 * 180.02562 * 14 13 10 16 16 H 1.08006 * 120.00296 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00311 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99855 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00265 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47019 * 90.00277 * 19 17 15 21 21 H 1.48500 * 109.46887 * 210.00196 * 19 17 15 22 22 H 1.48501 * 109.46971 * 330.00109 * 19 17 15 23 23 C 1.47148 * 118.03567 * 50.52872 * 7 6 4 24 24 C 1.53294 * 108.38911 * 309.47062 * 23 7 6 25 25 O 1.42954 * 109.51212 * 60.25210 * 4 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09005 * 109.68059 * 307.49535 * 6 4 2 34 34 H 1.09005 * 109.68663 * 68.00977 * 6 4 2 35 35 H 1.00901 * 110.99961 * 176.04311 * 12 10 8 36 36 H 1.00895 * 111.00027 * 299.99416 * 12 10 8 37 37 H 1.08990 * 109.47289 * 305.00640 * 13 10 8 38 38 H 1.08998 * 109.46564 * 65.00655 * 13 10 8 39 39 H 1.09002 * 109.47124 * 300.00403 * 14 13 10 40 40 H 1.09000 * 109.46868 * 60.00283 * 14 13 10 41 41 H 0.97000 * 120.00344 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.68136 * 69.19502 * 23 7 6 43 43 H 1.09004 * 109.68476 * 189.74828 * 23 7 6 44 44 H 1.08995 * 109.51550 * 172.22214 * 24 23 7 45 45 H 1.09003 * 109.50928 * 292.37812 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6756 -0.2091 2.1397 6 6 3.5729 -0.7214 1.2505 7 7 4.0362 -1.5769 2.3545 8 6 4.9515 -1.1336 3.2389 9 8 5.4063 -0.0144 3.1312 10 6 5.4098 -2.0283 4.3614 11 1 4.5570 -2.5793 4.7582 12 7 6.0037 -1.2110 5.4278 13 6 6.4535 -3.0148 3.8337 14 6 6.8270 -4.0029 4.9407 15 6 7.8554 -4.9741 4.4210 16 1 8.2077 -4.8945 3.4032 17 6 8.3473 -5.9638 5.2453 18 7 7.9188 -6.0606 6.4848 19 14 9.6216 -7.1683 4.6009 20 1 10.9826 -6.6292 4.8499 21 1 9.4695 -8.4702 5.2988 22 1 9.4255 -7.3628 3.1418 23 6 3.4707 -2.9310 2.4642 24 6 1.9428 -2.8234 2.4038 25 8 1.5688 -2.0710 1.2471 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.9408 -1.1140 0.3025 34 1 3.9400 0.2949 1.3941 35 1 6.2604 -1.7809 6.2198 36 1 6.7969 -0.6901 5.0849 37 1 6.0417 -3.5595 2.9842 38 1 7.3428 -2.4689 3.5187 39 1 7.2389 -3.4580 5.7902 40 1 5.9377 -4.5487 5.2557 41 1 8.2646 -6.7571 7.0646 42 1 3.8284 -3.5462 1.6384 43 1 3.7700 -3.3782 3.4122 44 1 1.5095 -3.8218 2.3444 45 1 1.5777 -2.3198 3.2989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424185002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:10 Heat of formation + Delta-G solvation = -120.791856 kcal Electronic energy + Delta-G solvation = -23514.794024 eV Core-core repulsion = 20144.577408 eV Total energy + Delta-G solvation = -3370.216616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65084 -39.82261 -37.18890 -36.55165 -35.73542 -34.86112 -31.72084 -31.51158 -29.49184 -28.10990 -27.58745 -25.89731 -24.87551 -23.35282 -22.03750 -21.17953 -20.15533 -19.00096 -18.31736 -17.71262 -17.14785 -16.83446 -16.46650 -16.17170 -15.98168 -15.66669 -15.54721 -14.98071 -14.91409 -14.70970 -14.33263 -14.24007 -13.88289 -13.59467 -13.56966 -13.16902 -13.00434 -12.91850 -12.66921 -12.58180 -12.49742 -12.20014 -11.91111 -11.84791 -11.73811 -11.70329 -11.43768 -11.31015 -11.15763 -10.71108 -10.56728 -9.72662 -9.61910 -8.22181 -6.32409 1.39377 1.40049 1.48017 1.51064 1.75180 2.39372 2.66343 3.11636 3.36157 3.60101 3.67742 3.85517 3.91558 3.96242 3.96884 4.12240 4.17512 4.23604 4.29278 4.41365 4.52139 4.61350 4.63417 4.70294 4.77322 4.80672 4.84560 4.90342 4.99656 5.04494 5.05487 5.18916 5.33775 5.39625 5.45101 5.45641 5.63099 5.79076 5.98636 6.12828 6.19651 6.24360 6.43363 6.82463 7.03266 7.36789 8.88487 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.003516 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.102433 B = 7961.796947 C = 8378.498714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.149 4.149 4 C 0.089 3.911 5 H 0.056 0.944 6 C 0.081 3.919 7 N -0.614 5.614 8 C 0.527 3.473 9 O -0.569 6.569 10 C 0.082 3.918 11 H 0.110 0.890 12 N -0.830 5.830 13 C -0.120 4.120 14 C 0.033 3.967 15 C -0.545 4.545 16 H 0.053 0.947 17 C 0.007 3.993 18 N -0.925 5.925 19 Si 0.957 3.043 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.266 1.266 23 C 0.063 3.937 24 C 0.051 3.949 25 O -0.381 6.381 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.354 0.646 36 H 0.344 0.656 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.002 0.998 40 H 0.005 0.995 41 H 0.264 0.736 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.133 0.867 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.367 9.145 -11.802 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 C -0.206 4.206 4 C 0.030 3.970 5 H 0.074 0.926 6 C -0.041 4.041 7 N -0.348 5.348 8 C 0.316 3.684 9 O -0.448 6.448 10 C -0.033 4.033 11 H 0.128 0.872 12 N -0.361 5.361 13 C -0.160 4.160 14 C -0.005 4.005 15 C -0.583 4.583 16 H 0.071 0.929 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.783 3.217 20 H -0.202 1.202 21 H -0.206 1.206 22 H -0.190 1.190 23 C -0.059 4.059 24 C -0.026 4.026 25 O -0.299 6.299 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.169 0.831 36 H 0.157 0.843 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.151 0.849 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.930 9.938 -11.818 22.185 hybrid contribution 2.004 -1.294 0.192 2.393 sum -13.926 8.644 -11.626 20.095 Atomic orbital electron populations 1.21719 0.93528 1.02168 1.02159 1.21082 0.97351 0.95863 0.95882 1.21878 1.01123 0.94581 1.02997 1.22535 0.91181 0.83606 0.99659 0.92646 1.22443 0.95625 0.96542 0.89532 1.48188 1.41743 1.16237 1.28663 1.20827 0.77991 0.86962 0.82605 1.90603 1.57340 1.21861 1.75011 1.21419 0.98873 0.92031 0.90983 0.87225 1.58768 1.38327 1.30054 1.08983 1.22140 0.97082 0.96756 1.00031 1.18948 0.95348 0.92912 0.93249 1.21592 1.24095 1.14307 0.98306 0.92851 1.25831 0.98714 0.99500 0.95083 1.70050 1.44701 1.34594 1.07156 0.85561 0.79169 0.78259 0.78758 1.20226 1.20596 1.18998 1.22753 0.95604 0.82681 1.04888 1.23101 0.92400 0.98518 0.88601 1.87931 1.75744 1.23433 1.42813 0.91261 0.92908 0.92516 0.89996 0.92554 0.92759 0.90363 0.90353 0.89132 0.83068 0.84317 0.91659 0.93909 0.97938 0.97627 0.92693 0.89594 0.88007 0.84891 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.05 71.98 0.65 -1.31 16 2 C -0.08 -1.32 2.72 -10.79 -0.03 -1.35 16 3 C -0.15 -2.13 8.85 71.98 0.64 -1.50 16 4 C 0.09 1.80 2.36 30.69 0.07 1.87 16 5 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 6 C 0.08 1.95 5.32 86.35 0.46 2.41 16 7 N -0.61 -16.90 3.02 -817.36 -2.47 -19.37 16 8 C 0.53 17.92 6.96 87.66 0.61 18.53 16 9 O -0.57 -22.69 15.72 -3.03 -0.05 -22.74 16 10 C 0.08 2.79 2.36 44.17 0.10 2.89 16 11 H 0.11 3.43 6.51 -2.38 -0.02 3.42 16 12 N -0.83 -28.88 8.94 -171.81 -1.54 -30.42 16 13 C -0.12 -4.69 4.59 30.60 0.14 -4.55 16 14 C 0.03 1.57 4.74 29.85 0.14 1.71 16 15 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.41 5.46 84.65 0.46 0.87 16 18 N -0.93 -53.54 13.29 21.45 0.28 -53.25 16 19 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 C 0.06 1.42 5.76 86.35 0.50 1.92 16 24 C 0.05 0.94 6.98 72.08 0.50 1.44 16 25 O -0.38 -7.94 9.72 -148.98 -1.45 -9.38 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.89 7.69 -2.38 -0.02 0.88 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.86 6.62 -2.39 -0.02 0.84 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.09 2.40 5.85 -2.38 -0.01 2.38 16 35 H 0.35 12.32 7.55 -89.69 -0.68 11.65 16 36 H 0.34 12.25 8.58 -89.70 -0.77 11.49 16 37 H 0.06 2.42 7.26 -2.39 -0.02 2.40 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.00 0.12 6.87 -2.39 -0.02 0.10 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.10 2.35 5.38 -2.39 -0.01 2.34 16 44 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -65.17 351.87 0.83 -64.34 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.46 Total: 32.24 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.48 Total: -6.42 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -3.72 Total: -103.04 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.50 Total: -32.12 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -65.17 0.83 -64.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424185002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.449 kcal (2) G-P(sol) polarization free energy of solvation -65.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds