Wall clock time and date at job start Tue Mar 31 2020 03:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47450 * 2 1 4 4 O 1.42903 * 110.64081 * 298.30119 * 3 2 1 5 5 C 1.54599 * 110.72492 * 61.44771 * 3 2 1 6 6 C 1.53992 * 105.13957 * 140.31895 * 5 3 2 7 7 N 1.47907 * 107.05864 * 1.22490 * 6 5 3 8 8 C 1.46897 * 111.00058 * 214.15633 * 7 6 5 9 9 H 1.08995 * 109.47273 * 53.72283 * 8 7 6 10 10 C 1.53005 * 109.47117 * 173.72022 * 8 7 6 11 11 C 1.50698 * 109.47314 * 293.71702 * 8 7 6 12 12 O 1.21283 * 120.00142 * 337.77654 * 11 8 7 13 13 N 1.34774 * 120.00018 * 157.76736 * 11 8 7 14 14 C 1.46501 * 119.99965 * 0.02562 * 13 11 8 15 15 C 1.46499 * 119.99974 * 180.02562 * 13 11 8 16 16 C 1.50703 * 109.46977 * 90.00754 * 15 13 11 17 17 H 1.08002 * 119.99925 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00141 * 180.02562 * 16 15 13 19 19 N 1.31511 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00063 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47117 * 90.00105 * 20 18 16 22 22 H 1.48501 * 109.47246 * 210.00030 * 20 18 16 23 23 H 1.48498 * 109.47156 * 330.00056 * 20 18 16 24 24 C 1.48532 * 105.82032 * 334.67208 * 7 6 5 25 25 H 1.08998 * 109.47422 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47518 * 300.00577 * 1 2 3 27 27 H 1.09003 * 109.46625 * 60.00164 * 1 2 3 28 28 H 1.09001 * 109.47518 * 239.99423 * 2 1 3 29 29 H 1.09010 * 109.46964 * 119.99608 * 2 1 3 30 30 H 0.96700 * 114.00059 * 61.69645 * 4 3 2 31 31 H 1.09001 * 110.30424 * 21.40325 * 5 3 2 32 32 H 1.08997 * 110.39110 * 259.27844 * 5 3 2 33 33 H 1.09005 * 109.91991 * 241.87944 * 6 5 3 34 34 H 1.09000 * 110.08194 * 120.67372 * 6 5 3 35 35 H 1.09000 * 109.47270 * 300.00137 * 10 8 7 36 36 H 1.08995 * 109.46836 * 59.99993 * 10 8 7 37 37 H 1.08996 * 109.47365 * 179.97438 * 10 8 7 38 38 H 1.09002 * 109.47377 * 89.99768 * 14 13 11 39 39 H 1.08997 * 109.46890 * 209.99339 * 14 13 11 40 40 H 1.08998 * 109.47245 * 329.99297 * 14 13 11 41 41 H 1.09001 * 109.47577 * 209.99991 * 15 13 11 42 42 H 1.08993 * 109.47665 * 330.00799 * 15 13 11 43 43 H 0.97002 * 120.00140 * 180.02562 * 19 18 16 44 44 H 1.08993 * 110.67049 * 157.63849 * 24 7 6 45 45 H 1.09002 * 110.66787 * 280.77494 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.6102 2.1288 -1.1774 5 6 1.5709 2.1887 1.2701 6 6 2.7740 3.0491 1.6985 7 7 3.8461 2.8211 0.7054 8 6 5.1703 2.8720 1.3392 9 1 5.1978 2.1784 2.1796 10 6 6.2398 2.4787 0.3182 11 6 5.4375 4.2704 1.8331 12 8 4.8402 5.2088 1.3496 13 7 6.3401 4.4784 2.8121 14 6 7.0618 3.3450 3.3959 15 6 6.5994 5.8379 3.2926 16 6 5.6655 6.1546 4.4322 17 1 4.9501 5.4171 4.7649 18 6 5.7237 7.3861 5.0493 19 7 6.5945 8.2843 4.6438 20 14 4.5657 7.7789 6.4613 21 1 5.1983 7.3828 7.7452 22 1 4.2821 9.2365 6.4782 23 1 3.2960 7.0297 6.2833 24 6 3.5837 1.4782 0.1275 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.6496 2.1998 -1.2628 31 1 1.3165 1.4764 2.0550 32 1 0.7139 2.8228 1.0432 33 1 3.1142 2.7450 2.6885 34 1 2.4956 4.1029 1.7092 35 1 6.0466 1.4672 -0.0391 36 1 6.2123 3.1722 -0.5221 37 1 7.2224 2.5168 0.7883 38 1 7.9807 3.1719 2.8356 39 1 7.3060 3.5661 4.4349 40 1 6.4358 2.4539 3.3515 41 1 7.6309 5.9109 3.6373 42 1 6.4363 6.5473 2.4814 43 1 6.6357 9.1507 5.0782 44 1 4.0529 1.3824 -0.8517 45 1 3.9323 0.6949 0.8006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495190175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:16 Heat of formation + Delta-G solvation = -75.777347 kcal Electronic energy + Delta-G solvation = -23912.916471 eV Core-core repulsion = 20544.651831 eV Total energy + Delta-G solvation = -3368.264640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14269 -38.71721 -36.11967 -34.67177 -33.27502 -32.65807 -31.87191 -28.91623 -28.15133 -27.61153 -25.82816 -24.34799 -23.09905 -22.25319 -20.74630 -20.22944 -18.18818 -17.05463 -16.64102 -16.40653 -16.14730 -15.43268 -14.88440 -14.55573 -14.37443 -14.15396 -13.84517 -13.69820 -13.49472 -12.84177 -12.76389 -12.55832 -12.28717 -12.17543 -12.06473 -12.01088 -11.78501 -11.62280 -11.41221 -11.31098 -11.23506 -11.16128 -10.91162 -10.72733 -10.57737 -10.52035 -10.13265 -9.93417 -9.59435 -8.75444 -8.41560 -8.10151 -7.57230 -6.01933 -4.06649 3.30448 3.37082 3.40243 3.49584 3.76517 3.97999 4.26264 4.44780 4.47261 4.54665 4.68031 4.88933 5.06014 5.09862 5.15174 5.19583 5.29165 5.32714 5.37687 5.51080 5.58448 5.63199 5.65742 5.70778 5.72805 5.81000 5.83117 5.88375 5.92663 5.97054 6.06832 6.17664 6.27929 6.38183 6.97204 7.03038 7.20483 7.49294 7.60126 7.63349 7.95044 8.26605 8.49028 8.93785 9.20833 9.58485 11.06111 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.004322 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.358492 B = 6476.719056 C = 7228.933567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C 0.130 3.870 4 O -0.540 6.540 5 C -0.154 4.154 6 C 0.041 3.959 7 N -0.483 5.483 8 C 0.053 3.947 9 H 0.058 0.942 10 C -0.139 4.139 11 C 0.510 3.490 12 O -0.519 6.519 13 N -0.605 5.605 14 C 0.083 3.917 15 C 0.247 3.753 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.050 3.950 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.370 0.630 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.090 0.910 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.999 -19.407 -7.212 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C 0.089 3.911 4 O -0.345 6.345 5 C -0.192 4.192 6 C -0.087 4.087 7 N -0.208 5.208 8 C -0.059 4.059 9 H 0.075 0.925 10 C -0.196 4.196 11 C 0.294 3.706 12 O -0.393 6.393 13 N -0.339 5.339 14 C -0.062 4.062 15 C 0.128 3.872 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.078 4.078 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.218 0.782 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.109 0.891 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.581 -18.222 -7.915 20.929 hybrid contribution -1.098 -0.428 1.809 2.159 sum -7.679 -18.650 -6.106 21.073 Atomic orbital electron populations 1.21799 0.95436 1.02111 1.02061 1.22116 0.96632 0.96540 1.02923 1.22013 0.94255 0.89918 0.84952 1.86622 1.26767 1.78897 1.42256 1.23153 0.99091 0.99081 0.97882 1.22826 0.90721 1.01854 0.93292 1.64585 1.00284 1.25934 1.29998 1.21930 0.91203 0.96170 0.96584 0.92459 1.21751 0.97138 1.01577 0.99183 1.20010 0.80459 0.89891 0.80197 1.90674 1.48093 1.43627 1.56937 1.48161 1.39900 1.09770 1.36047 1.21673 0.95708 0.89118 0.99655 1.19259 0.96270 0.76610 0.95110 1.21425 1.19142 0.99709 1.16088 0.92632 1.24932 0.95746 0.95950 0.97480 1.69932 1.35596 1.06212 1.41622 0.86510 0.81216 0.77623 0.82141 1.20679 1.21050 1.19961 1.23209 0.93243 0.90563 1.00768 0.92366 0.92288 0.92503 0.90976 0.91034 0.78224 0.90887 0.90427 0.94039 0.89138 0.92062 0.91038 0.91586 0.93749 0.90848 0.92720 0.95093 0.93843 0.92731 0.89124 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.45 37.16 0.35 -0.70 16 2 C -0.14 -1.16 5.13 -26.73 -0.14 -1.30 16 3 C 0.13 1.43 1.05 -88.76 -0.09 1.34 16 4 O -0.54 -6.60 13.07 -35.23 -0.46 -7.06 16 5 C -0.15 -1.80 5.27 -25.37 -0.13 -1.93 16 6 C 0.04 0.65 5.83 -2.75 -0.02 0.64 16 7 N -0.48 -7.88 4.76 -223.89 -1.07 -8.94 16 8 C 0.05 0.87 1.49 -68.86 -0.10 0.77 16 9 H 0.06 0.84 5.97 -51.93 -0.31 0.53 16 10 C -0.14 -1.88 8.89 37.16 0.33 -1.54 16 11 C 0.51 11.12 6.33 -10.99 -0.07 11.05 16 12 O -0.52 -13.81 15.59 5.55 0.09 -13.72 16 13 N -0.61 -13.23 2.86 -182.96 -0.52 -13.76 16 14 C 0.08 1.34 9.69 59.85 0.58 1.92 16 15 C 0.25 6.62 5.16 -5.19 -0.03 6.59 16 16 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16 17 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 20 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.05 0.62 4.43 -1.90 -0.01 0.61 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.40 7.16 -51.93 -0.37 0.03 16 27 H 0.06 0.35 6.94 -51.93 -0.36 -0.01 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.54 8.13 -51.92 -0.42 0.11 16 30 H 0.37 3.15 7.61 45.56 0.35 3.49 16 31 H 0.07 0.73 7.60 -51.93 -0.39 0.33 16 32 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.04 0.66 7.63 -51.93 -0.40 0.26 16 34 H 0.09 1.75 7.86 -51.93 -0.41 1.34 16 35 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.82 7.24 -51.93 -0.38 0.44 16 38 H 0.04 0.62 7.80 -51.93 -0.41 0.21 16 39 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 40 H 0.05 0.74 5.90 -51.93 -0.31 0.43 16 41 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 42 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 44 H 0.09 1.13 7.65 -51.93 -0.40 0.74 16 45 H 0.05 0.58 7.91 -51.93 -0.41 0.16 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -35.12 352.45 -7.71 -42.83 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.03 Total: 0.86 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 0.25 Total: 3.65 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.85 Total: -48.94 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.37 Total: -20.79 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.12 -7.71 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495190175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.949 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds