Wall clock time and date at job start Tue Mar 31 2020 03:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47018 * 2 1 4 4 C 1.46495 * 120.00215 * 269.99871 * 3 2 1 5 5 C 1.50694 * 109.47357 * 269.99983 * 4 3 2 6 6 H 1.08007 * 119.99983 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00241 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99845 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00156 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46975 * 89.99759 * 9 7 5 11 11 H 1.48497 * 109.47477 * 210.00004 * 9 7 5 12 12 H 1.48502 * 109.47181 * 330.00633 * 9 7 5 13 13 C 1.34783 * 119.99872 * 89.99848 * 3 2 1 14 14 O 1.21278 * 119.99838 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99884 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47021 * 179.97438 * 15 13 3 17 17 C 1.47853 * 110.99653 * 49.15949 * 16 15 13 18 18 C 1.55382 * 104.83275 * 146.36900 * 17 16 15 19 19 C 1.55135 * 101.43926 * 322.95268 * 18 17 16 20 20 O 1.42903 * 110.70805 * 277.17584 * 19 18 17 21 21 C 1.53001 * 110.70430 * 154.12005 * 19 18 17 22 22 C 1.53003 * 109.47086 * 63.80606 * 21 19 18 23 23 C 1.47444 * 110.99947 * 169.99764 * 16 15 13 24 24 H 1.08995 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47474 * 300.00052 * 1 2 3 26 26 H 1.09006 * 109.47159 * 59.99622 * 1 2 3 27 27 H 1.08998 * 109.46725 * 240.00497 * 2 1 3 28 28 H 1.08994 * 109.47036 * 119.99949 * 2 1 3 29 29 H 1.09004 * 109.46842 * 30.00297 * 4 3 2 30 30 H 1.09004 * 109.46953 * 150.00033 * 4 3 2 31 31 H 0.97010 * 119.99481 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.46867 * 59.99654 * 15 13 3 33 33 H 1.08999 * 109.46764 * 299.99824 * 15 13 3 34 34 H 1.09004 * 110.37185 * 265.18804 * 17 16 15 35 35 H 1.08996 * 110.37339 * 27.42345 * 17 16 15 36 36 H 1.09004 * 111.16710 * 204.89782 * 18 17 16 37 37 H 1.08994 * 111.01289 * 80.93960 * 18 17 16 38 38 H 0.96700 * 114.00311 * 296.20009 * 20 19 18 39 39 H 1.09006 * 109.47306 * 183.80420 * 21 19 18 40 40 H 1.08996 * 109.47422 * 303.80722 * 21 19 18 41 41 H 1.09000 * 109.47373 * 59.99789 * 22 21 19 42 42 H 1.09000 * 109.47102 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.47053 * 299.99794 * 22 21 19 44 44 H 1.09005 * 109.88328 * 117.33897 * 23 16 15 45 45 H 1.08996 * 110.01999 * 356.23218 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3898 -2.8778 8 7 3.3490 3.1258 -3.6179 9 14 5.9135 2.0969 -3.4167 10 1 5.9776 0.8755 -4.2590 11 1 6.3921 3.2641 -4.2002 12 1 6.7736 1.9180 -2.2194 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1599 1.1673 15 6 1.9911 1.3063 2.4724 16 7 2.3100 2.2060 3.5889 17 6 1.6699 3.5261 3.4050 18 6 1.3236 4.0040 4.8424 19 6 0.9080 2.6708 5.5182 20 8 -0.4554 2.3591 5.2248 21 6 1.1323 2.7379 7.0302 22 6 0.2231 3.8104 7.6335 23 6 1.8551 1.6384 4.8714 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.5816 1.6877 -2.0283 30 1 2.0955 3.1411 -1.1383 31 1 3.6750 3.5157 -4.4443 32 1 2.6209 0.4186 2.5303 33 1 0.9430 1.0126 2.5298 34 1 2.3630 4.2212 2.9311 35 1 0.7636 3.4284 2.8074 36 1 0.4948 4.7120 4.8329 37 1 2.1971 4.4344 5.3322 38 1 -1.0897 2.9983 5.5774 39 1 0.8983 1.7708 7.4755 40 1 2.1735 2.9886 7.2323 41 1 -0.8183 3.5598 7.4314 42 1 0.3825 3.8579 8.7107 43 1 0.4570 4.7775 7.1883 44 1 2.7110 1.4612 5.5228 45 1 1.3219 0.7038 4.6976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495231077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:05 Heat of formation + Delta-G solvation = -80.353234 kcal Electronic energy + Delta-G solvation = -23744.471453 eV Core-core repulsion = 20376.008387 eV Total energy + Delta-G solvation = -3368.463066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.10076 -38.73314 -36.00348 -35.05026 -33.12338 -32.74916 -30.66360 -30.05165 -28.74086 -27.48535 -25.57183 -23.25490 -22.98556 -22.43666 -21.00353 -20.26523 -18.35542 -16.97252 -16.43584 -16.24594 -16.02034 -15.47673 -15.16036 -14.78443 -14.51765 -14.23126 -13.72224 -13.43068 -13.29771 -13.14785 -12.84380 -12.61443 -12.39904 -12.28407 -12.02193 -11.94079 -11.66663 -11.56025 -11.27007 -11.23095 -11.14025 -11.06280 -10.86138 -10.68902 -10.64350 -10.46980 -10.09492 -9.90971 -9.57182 -8.70140 -8.39767 -8.10258 -7.59267 -6.00434 -4.04703 3.32997 3.39450 3.43356 3.50912 3.76059 4.00044 4.25046 4.40761 4.49694 4.61752 4.67005 4.93304 5.10158 5.14750 5.27156 5.34246 5.36445 5.41166 5.43510 5.54279 5.57447 5.65421 5.68169 5.70882 5.79424 5.81455 5.84095 5.89788 6.02441 6.07777 6.20294 6.26562 6.50907 6.52207 7.01190 7.11829 7.21631 7.47571 7.48995 7.61782 7.96723 8.28415 8.48598 8.95495 9.17564 9.60400 11.07599 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.003860 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.276728 B = 7251.372897 C = 7722.409210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.529 6.529 15 C 0.031 3.969 16 N -0.510 5.510 17 C 0.060 3.940 18 C -0.157 4.157 19 C 0.107 3.893 20 O -0.554 6.554 21 C -0.141 4.141 22 C -0.157 4.157 23 C 0.054 3.946 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.373 0.627 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.173 -3.717 19.440 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.292 3.708 14 O -0.406 6.406 15 C -0.100 4.100 16 N -0.234 5.234 17 C -0.067 4.067 18 C -0.196 4.196 19 C 0.066 3.934 20 O -0.361 6.361 21 C -0.179 4.179 22 C -0.214 4.214 23 C -0.074 4.074 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.221 0.779 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.134 -3.452 18.930 20.523 hybrid contribution -0.215 0.062 -0.188 0.292 sum -7.349 -3.390 18.742 20.415 Atomic orbital electron populations 1.22220 0.96887 1.01371 1.02241 1.21405 0.93426 0.84325 1.02616 1.48246 1.63936 1.13227 1.07676 1.19237 0.96198 0.93567 0.78105 1.21451 0.96958 1.31712 1.06141 0.92458 1.24935 0.97836 0.94952 0.96431 1.69939 1.35693 1.33588 1.14311 0.86500 0.84771 0.77603 0.78574 1.20705 1.21132 1.19847 1.20144 0.78701 0.87057 0.84905 1.90633 1.45242 1.17941 1.86761 1.22355 1.00378 0.96736 0.90544 1.63571 1.56603 1.02915 1.00355 1.23146 0.98162 0.91004 0.94398 1.23558 1.01775 0.96671 0.97578 1.22523 0.82426 0.95173 0.93319 1.86556 1.15592 1.53555 1.80397 1.22070 1.01032 0.99968 0.94847 1.21800 0.99523 0.99088 1.01016 1.22907 0.96106 0.96683 0.91678 0.92193 0.93185 0.92073 0.89936 0.91842 0.95149 0.93991 0.92792 0.88602 0.92211 0.87868 0.93846 0.90827 0.89967 0.77916 0.91248 0.90581 0.92740 0.92325 0.92236 0.89162 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.11 1.77 5.93 -4.04 -0.02 1.74 16 3 N -0.60 -12.94 2.46 -175.06 -0.43 -13.37 16 4 C 0.25 6.59 5.16 -5.20 -0.03 6.56 16 5 C -0.52 -15.11 9.39 -34.44 -0.32 -15.43 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.51 10.86 7.20 -10.98 -0.08 10.78 16 14 O -0.53 -13.37 13.13 5.56 0.07 -13.30 16 15 C 0.03 0.51 3.87 -4.97 -0.02 0.49 16 16 N -0.51 -8.14 5.21 -232.37 -1.21 -9.35 16 17 C 0.06 0.97 4.95 -2.04 -0.01 0.96 16 18 C -0.16 -1.85 5.32 -24.34 -0.13 -1.98 16 19 C 0.11 1.15 0.94 -88.80 -0.08 1.06 16 20 O -0.55 -6.18 13.05 -35.23 -0.46 -6.64 16 21 C -0.14 -1.15 5.09 -26.73 -0.14 -1.29 16 22 C -0.16 -1.05 9.43 37.16 0.35 -0.70 16 23 C 0.05 0.67 6.23 -2.84 -0.02 0.66 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.70 7.22 -51.93 -0.37 0.32 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 28 H 0.06 0.89 6.44 -51.93 -0.33 0.55 16 29 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.10 1.43 7.40 -51.93 -0.38 1.05 16 33 H 0.06 0.91 7.00 -51.93 -0.36 0.55 16 34 H 0.10 1.97 6.71 -51.93 -0.35 1.62 16 35 H 0.04 0.77 7.53 -51.93 -0.39 0.38 16 36 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 37 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 38 H 0.37 2.88 7.44 45.56 0.34 3.22 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.32 6.84 -51.93 -0.36 -0.03 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.40 7.37 -51.93 -0.38 0.02 16 44 H 0.09 0.99 7.82 -51.93 -0.41 0.59 16 45 H 0.06 0.79 7.43 -51.93 -0.39 0.41 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -33.70 352.94 -8.32 -42.02 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.11 Total: 1.86 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.22 Total: 2.50 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.90 Total: -48.96 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.39 Total: -19.94 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.70 -8.32 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495231077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.331 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds